The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_B15_T7.seq Fgr-S3_1_B15_T7 LENGTH:347bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_B15 ; CLONELIB: n/a
(347 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||T32404 hypothetical protein R148.3 - Caenorhabditis el... 30 5.0
ref|NP_497667.1| (NM_065266) R148.3.p [Caenorhabditis elega... 30 5.0
ref|NP_596366.1| (NC_003423) hypothetical protein [Schizosa... 29 8.5
gb|AAH12405.1|AAH12405 (BC012405) Unknown (protein for MGC:... 29 8.5
ref|NP_001117.1| (NM_001126) adenylosuccinate synthase; Ade... 29 8.5
pir||S21166 adenylosuccinate synthase (EC 6.3.4.4) - human 29 8.5
dbj|BAB23635.1| (AK004877) adenylosuccinate synthetase 2, n... 29 8.5
prf||2122208B adenylosuccinate synthetase:ISOTYPE=nonmuscle... 29 8.5
gb|AAH12356.1|AAH12356 (BC012356) Similar to adenylosuccina... 29 8.5
ref|NP_031448.1| (NM_007422) adenylosuccinate synthetase 2,... 29 8.5
ref|NP_494263.1| (NM_061862) F16G10.9.p [Caenorhabditis ele... 29 8.5
>pir||T32404 hypothetical protein R148.3 - Caenorhabditis elegans
Length = 1127
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = -3
Query: 324 SFVDARFHEFCTSSRRHV--GHIATGSGQAPNNSAEQHGGRTPVVPPQ 187
SF+ +F +R+H GH+ + S P +S +GGR+P PP+
Sbjct: 1057 SFMSTSQPQFLPLNRQHSRSGHLMSNSANGPYSSGGSNGGRSP--PPE 1102
>ref|NP_497667.1| (NM_065266) R148.3.p [Caenorhabditis elegans]
gb|AAB71038.2| (AF025467) Hypothetical protein R148.3 [Caenorhabditis elegans]
Length = 1115
Score = 30.0 bits (66), Expect = 5.0
Identities = 16/48 (33%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = -3
Query: 324 SFVDARFHEFCTSSRRHV--GHIATGSGQAPNNSAEQHGGRTPVVPPQ 187
SF+ +F +R+H GH+ + S P +S +GGR+P PP+
Sbjct: 1045 SFMSTSQPQFLPLNRQHSRSGHLMSNSANGPYSSGGSNGGRSP--PPE 1090
>ref|NP_596366.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
pir||T39873 hypothetical protein SPBC20F10.02c - fission yeast
(Schizosaccharomyces pombe)
emb|CAA16842.1| (AL021747) hypothetical protein [Schizosaccharomyces pombe]
Length = 600
Score = 29.3 bits (64), Expect = 8.5
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -1
Query: 200 SYRPSSSNEQ*DVKSQYRTFPDARSNHYFTL 108
S R SS+N D +SQ+ PD R+ +FT+
Sbjct: 261 SLRSSSNNPDSDQESQFSRLPDERATMFFTI 291
>gb|AAH12405.1|AAH12405 (BC012405) Unknown (protein for MGC:12134) [Mus musculus]
Length = 493
Score = 29.3 bits (64), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 327 YSFVDARFHEFCTSSRRHVGHIATGSGQAP 238
Y++ D+ E C SSRRH H +G+ P
Sbjct: 13 YNWEDSNIEEHCESSRRHGRHERNHTGEKP 42
>ref|NP_001117.1| (NM_001126) adenylosuccinate synthase; Adenylosuccinate synthetase
(Ade(-)H-complementing) [Homo sapiens]
sp|P30520|PURA_HUMAN Adenylosuccinate synthetase (IMP--aspartate ligase) (ADSS)
(AMPSASE)
emb|CAA47123.1| (X66503) adenylosuccinate synthetase [Homo sapiens]
Length = 455
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 318 VDARFHEFCTSSRRHVGHIATGSGQAPNNSAEQHG 214
+D + F TSS VG + TG G P N E +G
Sbjct: 260 IDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYG 294
>pir||S21166 adenylosuccinate synthase (EC 6.3.4.4) - human
Length = 455
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 318 VDARFHEFCTSSRRHVGHIATGSGQAPNNSAEQHG 214
+D + F TSS VG + TG G P N E +G
Sbjct: 260 IDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYG 294
>dbj|BAB23635.1| (AK004877) adenylosuccinate synthetase 2, non muscle~data
source:MGD, source key:MGI:87948, evidence:ISS~putative
[Mus musculus]
dbj|BAB26805.1| (AK010263) adenylosuccinate synthetase 2, non muscle~data
source:MGD, source key:MGI:87948, evidence:ISS~putative
[Mus musculus]
Length = 456
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 318 VDARFHEFCTSSRRHVGHIATGSGQAPNNSAEQHG 214
+D + F TSS VG + TG G P N E +G
Sbjct: 261 IDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYG 295
>prf||2122208B adenylosuccinate synthetase:ISOTYPE=nonmuscle [Mus musculus]
Length = 456
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 318 VDARFHEFCTSSRRHVGHIATGSGQAPNNSAEQHG 214
+D + F TSS VG + TG G P N E +G
Sbjct: 261 IDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYG 295
>gb|AAH12356.1|AAH12356 (BC012356) Similar to adenylosuccinate synthase [Homo sapiens]
Length = 456
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 318 VDARFHEFCTSSRRHVGHIATGSGQAPNNSAEQHG 214
+D + F TSS VG + TG G P N E +G
Sbjct: 261 IDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYG 295
>ref|NP_031448.1| (NM_007422) adenylosuccinate synthetase 2, non muscle [Mus
musculus]
sp|P46664|PUA2_MOUSE ADENYLOSUCCINATE SYNTHETASE, NON-MUSCLE ISOZYME (IMP--ASPARTATE
LIGASE) (ADSS) (AMPSASE)
pir||A53162 adenylosuccinate synthase (EC 6.3.4.4), non-muscle - mouse
gb|AAA19727.1| (L24554) adenylosuccinate synthetase [Mus musculus]
Length = 456
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 318 VDARFHEFCTSSRRHVGHIATGSGQAPNNSAEQHG 214
+D + F TSS VG + TG G P N E +G
Sbjct: 261 IDFGTYPFVTSSNCTVGGVCTGLGMPPQNVGEVYG 295
>ref|NP_494263.1| (NM_061862) F16G10.9.p [Caenorhabditis elegans]
pir||T33361 hypothetical protein F16G10.9 - Caenorhabditis elegans
gb|AAC26277.1| (AF077537) F16G10.9 gene product [Caenorhabditis elegans]
Length = 226
Score = 29.3 bits (64), Expect = 8.5
Identities = 14/38 (36%), Positives = 20/38 (51%)
Frame = +3
Query: 102 EAKCKIMVASCIWEGAVL*FDVSLLITTTGAVRLGCVP 215
E CKI A+C +V+ V++ T G + L CVP
Sbjct: 97 EQLCKISAATCPDLASVISGQVAMTTDTDGCIELSCVP 134
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,816,997
Number of Sequences: 922381
Number of extensions: 4326696
Number of successful extensions: 10907
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 10698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10906
length of database: 289,601,141
effective HSP length: 91
effective length of database: 205,664,470
effective search space used: 4935947280
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)