The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_B16_T7.seq Fgr-S3_1_B16_T7 LENGTH:355bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_B16 ; CLONELIB: n/a
(355 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13507.1|AC068924_12 (AC068924) putative cytochrome P4... 31 2.9
ref|NP_325982.1| (NC_002771) TRANSPOSASE FOR INSERTION SEQU... 31 2.9
sp|P46588|DPOD_CANAL DNA polymerase delta catalytic subunit... 30 5.0
emb|CAA61282.1| (X88804) DNA-directed DNA polymerase III [C... 30 5.0
pir||S60677 DNA-directed DNA polymerase III (EC 2.7.7.7) - ... 30 5.0
ref|NP_325849.1| (NC_002771) TRANSPOSASE FOR INSERTION SEQU... 29 8.4
dbj|BAB61153.1| (AP003199) hypothetical protein [Oryza sati... 29 8.4
>gb|AAG13507.1|AC068924_12 (AC068924) putative cytochrome P450 [Oryza sativa (japonica
cultivar-group)]
Length = 516
Score = 30.8 bits (68), Expect = 2.9
Identities = 19/68 (27%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Frame = -3
Query: 257 LSNIIKPNNIHLK*HDEINRIIQELDTQIVHNRGHG*P*LVYTLCRGLRTFP--HKTRPH 84
++ ++K +I K HDEI + ++ HG P L + GLR P H PH
Sbjct: 327 MAELVKNPSIQSKLHDEIKSKTGDDQPEVTEEDVHGMPYLRAVVLEGLRKHPPGHFVLPH 386
Query: 83 P*SDDRDI 60
++D ++
Sbjct: 387 RAAEDVEV 394
>ref|NP_325982.1| (NC_002771) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(FRAGMENT) (Mycoplasma pulmonis)
emb|CAC13324.1| (AL445563) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(FRAGMENT) (Mycoplasma pulmonis)
Length = 78
Score = 30.8 bits (68), Expect = 2.9
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = -3
Query: 335 VQRNKFN*LSWWLLNIENG*QHSQSQLSNIIKPN 234
+ +NKF+ W++++++G Q+S +Q S IIK N
Sbjct: 18 ISKNKFD--KEWIIHLDHGSQYSSTQYSEIIKEN 49
>sp|P46588|DPOD_CANAL DNA polymerase delta catalytic subunit (DNA polymerase III)
pir||T18222 DNA polymerase delta chain - yeast (Candida albicans)
emb|CAA21949.1| (AL033396) DNA polymerase delta [Candida albicans]
Length = 1038
Score = 30.0 bits (66), Expect = 5.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -1
Query: 250 TSLNPTIFI*SNMMRSTG*SKN*ILKLSITGD----TANHD*FIHSAEVCALFPTRLDHI 83
+SL P+I + N+ +T +KN I +T D T N D F+HS + PT LD +
Sbjct: 539 SSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDYFVHSNLRKGILPTILDEL 598
>emb|CAA61282.1| (X88804) DNA-directed DNA polymerase III [Candida albicans]
Length = 1038
Score = 30.0 bits (66), Expect = 5.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -1
Query: 250 TSLNPTIFI*SNMMRSTG*SKN*ILKLSITGD----TANHD*FIHSAEVCALFPTRLDHI 83
+SL P+I + N+ +T +KN I +T D T N D F+HS + PT LD +
Sbjct: 539 SSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDYFVHSNLRKGILPTILDEL 598
>pir||S60677 DNA-directed DNA polymerase III (EC 2.7.7.7) - yeast (Candida
albicans)
pir||JC5757 DNA-directed DNA polymerase (EC 2.7.7.7) III - yeast (Candida
albicans)
Length = 1038
Score = 30.0 bits (66), Expect = 5.0
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -1
Query: 250 TSLNPTIFI*SNMMRSTG*SKN*ILKLSITGD----TANHD*FIHSAEVCALFPTRLDHI 83
+SL P+I + N+ +T +KN I +T D T N D F+HS + PT LD +
Sbjct: 539 SSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKTPNGDYFVHSNLRKGILPTILDEL 598
>ref|NP_325849.1| (NC_002771) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(Mycoplasma pulmonis)
ref|NP_326225.1| (NC_002771) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(Mycoplasma pulmonis)
ref|NP_326587.1| (NC_002771) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(Mycoplasma pulmonis)
emb|CAC13191.1| (AL445563) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(Mycoplasma pulmonis)
emb|CAC13567.1| (AL445564) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(Mycoplasma pulmonis)
emb|CAC13929.1| (AL445565) TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1138
(Mycoplasma pulmonis)
Length = 402
Score = 29.3 bits (64), Expect = 8.4
Identities = 15/43 (34%), Positives = 26/43 (59%)
Frame = -3
Query: 302 WLLNIENG*QHSQSQLSNIIKPNNIHLK*HDEINRIIQELDTQ 174
W+++ ++G Q+S +Q S IIK NN + ++RI LD +
Sbjct: 302 WIIHSDHGSQYSSNQYSEIIKENNGII----SMSRIANSLDNR 340
>dbj|BAB61153.1| (AP003199) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB61156.1| (AP003204) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 137
Score = 29.3 bits (64), Expect = 8.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 173 IVHNRGHG*P*LVYTLCRGLRTFPHKT 93
I HNRGHG +TL RG+R +P T
Sbjct: 4 IAHNRGHGYS-NSFTLARGIRLYPEDT 29
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,743,756
Number of Sequences: 922381
Number of extensions: 3446343
Number of successful extensions: 4378
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4376
length of database: 289,601,141
effective HSP length: 93
effective length of database: 203,819,708
effective search space used: 4891672992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)