The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.3 [Apr-24-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fgr-S3_1_B19_T7.seq Fgr-S3_1_B19_T7 LENGTH:440bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_B19 ; CLONELIB: n/a 
         (440 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
           922,381 sequences; 289,601,141 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC13690.1|  (AF056624) ubiquitin fusion protein [Magnapo...    35   0.29 
gb|AAF24230.1|AF175521_1  (AF175521) UBI1 [Emericella nidulans]    34   0.49 
gb|AAC24705.1|  (AF060232) monoubiquitin/carboxy extension p...    34   0.49 
pir||UQNCR  ubiquitin / ribosomal protein S27a - Neurospora ...    33   0.84 
sp|P14799|R27A_NEUCR  40S ribosomal protein S27A (CRP6) (S37)      33   0.84 
pir||T46664  ubiquitin/S27a fusion protein [imported] - Neur...    33   0.84 
gb|AAC32468.1|  (AF044501) core protein [Escherichia coli]         31   3.2  
ref|NP_287701.1|  (NC_002655) unknown protein associated wit...    31   3.2  
ref|NP_310088.1|  (NC_002695) RhsE core protein with extensi...    31   3.2  
pir||T48889  serine/threonine protein kinase (EC 2.7.1.-) af...    31   4.2  
sp|P54741|AFSK_STRCO  Serine/threonine protein kinase afsK >...    31   4.2  
emb|CAA11268.1|  (AJ223329) ubiquitin extension protein [Nic...    30   5.4  
pir||UQTO7A  ubiquitin / ribosomal protein S27a - tomato >gi...    30   7.1  
sp|P27083|R27A_LYCES  40S RIBOSOMAL PROTEIN S27A                   30   7.1  
gb|AAF31464.1|AF228550_3  (AF228550) Gag-Pro-Pol [Endogenous...    30   9.3  
gb|AAF31467.1|AF228551_1  (AF228551) Gag [Exogenous mouse ma...    30   9.3  
gb|AAF31472.1|AF228552_1  (AF228552) Gag [Exogenous mouse ma...    30   9.3  
sp|P11284|GAG_MMTVC  GAG polyprotein [Contains: Protein P10;...    30   9.3  
gb|AAF31462.1|AF228550_1  (AF228550) Gag [Endogenous mouse m...    30   9.3  
ref|NP_056882.1|  (NC_001503) Pr77 [Mouse mammary tumor viru...    30   9.3  
gb|AAF31469.1|AF228551_3  (AF228551) Gag-Pro-Pol [Exogenous ...    30   9.3  
gb|AAF31474.1|AF228552_3  (AF228552) Gag-Pro-Pol [Exogenous ...    30   9.3  
ref|NP_056880.1|  (NC_001503) Pr160 [Mouse mammary tumor vir...    30   9.3  
gb|AAH05685.1|AAH05685  (BC005685) Unknown (protein for IMAG...    30   9.3  
gb|AAF31468.1|AF228551_2  (AF228551) Gag-Pro [Exogenous mous...    30   9.3  
gb|AAA46542.1|  (M15122) Pr160 gag pro pol precursor [Mouse ...    30   9.3  
gb|AAF31463.1|AF228550_2  (AF228550) Gag-Pro [Endogenous mou...    30   9.3  
ref|NP_056881.1|  (NC_001503) Pr110 [Mouse mammary tumor vir...    30   9.3  
gb|AAF31473.1|AF228552_2  (AF228552) Gag-Pro [Exogenous mous...    30   9.3  
gb|AAG13985.1|AF298826_1  (AF298826) ubiquitin/ribosomal pro...    30   9.3  
gb|AAA46541.1|  (M15122) Pr110 gag pro precursor [Mouse mamm...    30   9.3  
emb|CAA71132.1|  (Y10024) ubiquitin extension protein [Solan...    30   9.3  
pir||A29029  gag polyprotein - mouse mammary tumor virus (st...    30   9.3  

>gb|AAC13690.1| (AF056624) ubiquitin fusion protein [Magnaporthe grisea]
          Length = 154

 Score = 34.7 bits (78), Expect = 0.29
 Identities = 12/14 (85%), Positives = 14/14 (99%)
 Frame = -1

Query: 422 RYCGRCHLTYVFDQ 381
           +YCGRCHLTYVFD+
Sbjct: 139 QYCGRCHLTYVFDK 152



>gb|AAF24230.1|AF175521_1 (AF175521) UBI1 [Emericella nidulans]
          Length = 154

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 11/14 (78%), Positives = 14/14 (99%)
 Frame = -1

Query: 422 RYCGRCHLTYVFDQ 381
           +YCG+CHLTYVFD+
Sbjct: 139 QYCGKCHLTYVFDE 152



>gb|AAC24705.1| (AF060232) monoubiquitin/carboxy extension protein fusion
           [Botryotinia fuckeliana]
          Length = 155

 Score = 33.9 bits (76), Expect = 0.49
 Identities = 11/13 (84%), Positives = 13/13 (99%)
 Frame = -1

Query: 422 RYCGRCHLTYVFD 384
           +YCGRCHLTY+FD
Sbjct: 139 QYCGRCHLTYIFD 151



>pir||UQNCR ubiquitin / ribosomal protein S27a - Neurospora crassa  (fragment)
 emb|CAA33390.1| (X15338) UBI 3 fusion protein (149 AA) [Neurospora crassa]
          Length = 149

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 11/14 (78%), Positives = 14/14 (99%)
 Frame = -1

Query: 422 RYCGRCHLTYVFDQ 381
           +YCGRCHLTYVF++
Sbjct: 134 QYCGRCHLTYVFEK 147



>sp|P14799|R27A_NEUCR 40S ribosomal protein S27A (CRP6) (S37)
          Length = 78

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 11/14 (78%), Positives = 14/14 (99%)
 Frame = -1

Query: 422 RYCGRCHLTYVFDQ 381
           +YCGRCHLTYVF++
Sbjct: 63  QYCGRCHLTYVFEK 76



>pir||T46664 ubiquitin/S27a fusion protein [imported] - Neurospora crassa
 gb|AAA56880.1| (U01220) ubiquitin/S27a fusion protein [Neurospora crassa]
 gb|AAA03351.1| (U01221) ubiquitin/ribosomal protein S27a fusion protein
           [Neurospora crassa]
          Length = 154

 Score = 33.1 bits (74), Expect = 0.84
 Identities = 11/14 (78%), Positives = 14/14 (99%)
 Frame = -1

Query: 422 RYCGRCHLTYVFDQ 381
           +YCGRCHLTYVF++
Sbjct: 139 QYCGRCHLTYVFEK 152



>gb|AAC32468.1| (AF044501) core protein [Escherichia coli]
          Length = 350

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 62  KNLPAAVSLSTYSTV-RGEADSWGHASREDVPAYYGQNNYSCT*QQDPPDGPPYFTKKRF 238
           + LP A+     +T  RGE D WG+   E+ P YY    Y    QQ   +   Y+ + R+
Sbjct: 110 RGLPLALISEDGNTAWRGEYDEWGNQLNEENP-YYLHQPYRLPGQQHDEESGLYYNRNRY 168



>ref|NP_287701.1| (NC_002655) unknown protein associated with Rhs element
           [Escherichia coli O157:H7 EDL933]
 gb|AAG56315.1|AE005360_7 (AE005360) unknown protein associated with Rhs element [Escherichia
           coli O157:H7 EDL933]
          Length = 656

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 62  KNLPAAVSLSTYSTV-RGEADSWGHASREDVPAYYGQNNYSCT*QQDPPDGPPYFTKKRF 238
           + LP A+     +T  RGE D WG+   E+ P YY    Y    QQ   +   Y+ + R+
Sbjct: 416 RGLPLALISEDGNTAWRGEYDEWGNQLNEENP-YYLHQPYRLPGQQHDEESGLYYNRNRY 474



>ref|NP_310088.1| (NC_002695) RhsE core protein with extension [Escherichia coli
            O157:H7]
 dbj|BAB35484.1| (AP002557) RhsE core protein with extension [Escherichia coli
            O157:H7]
          Length = 1400

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 62   KNLPAAVSLSTYSTV-RGEADSWGHASREDVPAYYGQNNYSCT*QQDPPDGPPYFTKKRF 238
            + LP A+     +T  RGE D WG+   E+ P YY    Y    QQ   +   Y+ + R+
Sbjct: 1160 RGLPLALISEDGNTAWRGEYDEWGNQLNEENP-YYLHQPYRLPGQQHDEESGLYYNRNRY 1218



>pir||T48889 serine/threonine protein kinase (EC 2.7.1.-) afsK [validated] -
           Streptomyces coelicolor
          Length = 799

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 19/49 (38%), Positives = 27/49 (54%)
 Frame = -2

Query: 190 SGTGIIILPVISRHILAAGVAPAVSLSTYSTVRGEADSGR*VFFAKYRG 44
           +GT ++ L V S H+     APAV L+  + V G A +G  V+ A Y G
Sbjct: 614 AGTRVLALEVASGHVRWHFEAPAVFLAPPTFVPGPAVTGGGVYLADYLG 662



>sp|P54741|AFSK_STRCO Serine/threonine protein kinase afsK
 dbj|BAA08229.2| (D45382) afsK [Streptomyces coelicolor]
          Length = 799

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 19/49 (38%), Positives = 27/49 (54%)
 Frame = -2

Query: 190 SGTGIIILPVISRHILAAGVAPAVSLSTYSTVRGEADSGR*VFFAKYRG 44
           +GT ++ L V S H+     APAV L+  + V G A +G  V+ A Y G
Sbjct: 614 AGTRVLALEVASGHVRWHFEAPAVFLAPPTFVPGPAVTGGGVYLADYLG 662



>emb|CAA11268.1| (AJ223329) ubiquitin extension protein [Nicotiana tabacum]
          Length = 156

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = -1

Query: 419 YCGRCHLTYVFDQVGPD 369
           YCG+C LTYV+++ G D
Sbjct: 140 YCGKCGLTYVYNKAGAD 156



>pir||UQTO7A ubiquitin / ribosomal protein S27a - tomato
 pir||S25305 ubiquitin / ribosomal protein S27a - potato
 emb|CAA41207.1| (X58253) ubiquitin [Lycopersicon esculentum]
 emb|CAA77735.1| (Z11669) ubiquitin monomer/ribosomal protein [Solanum tuberosum]
 gb|AAA19247.1| (L22576) ubiquitin/ribosomal fusion protein [Solanum tuberosum]
          Length = 156

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = -1

Query: 419 YCGRCHLTYVFDQVGPD 369
           YCG+C LTYV+++ G D
Sbjct: 140 YCGKCGLTYVYNKAGGD 156



>sp|P27083|R27A_LYCES 40S RIBOSOMAL PROTEIN S27A
          Length = 80

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 10/17 (58%), Positives = 14/17 (81%)
 Frame = -1

Query: 419 YCGRCHLTYVFDQVGPD 369
           YCG+C LTYV+++ G D
Sbjct: 64  YCGKCGLTYVYNKAGGD 80



>gb|AAF31464.1|AF228550_3 (AF228550) Gag-Pro-Pol [Endogenous mouse mammary tumor virus Mtv1]
          Length = 1755

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31467.1|AF228551_1 (AF228551) Gag [Exogenous mouse mammary tumor virus]
          Length = 591

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31472.1|AF228552_1 (AF228552) Gag [Exogenous mouse mammary tumor virus]
          Length = 591

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>sp|P11284|GAG_MMTVC GAG polyprotein [Contains: Protein P10; Phosphorylated protein
           PP21; Protein P3; Protein P8; Major core protein P27;
           Nucleic acid binding protein P14]
          Length = 591

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31462.1|AF228550_1 (AF228550) Gag [Endogenous mouse mammary tumor virus Mtv1]
          Length = 591

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>ref|NP_056882.1| (NC_001503) Pr77 [Mouse mammary tumor virus]
 sp|P10258|GAG_MMTVB GAG polyprotein [Contains: Protein P10; Phosphorylated protein
           PP21; Protein P3; Protein P8; Major core protein P27;
           Nucleic acid binding protein P14]
 pir||FOMVMM gag polyprotein - mouse mammary tumor virus
 gb|AAA46543.1| (M15122) Pr77 gag precursor [Mouse mammary tumor virus]
 gb|AAC82557.1| (AF033807) Pr77 [Mouse mammary tumor virus]
          Length = 591

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31469.1|AF228551_3 (AF228551) Gag-Pro-Pol [Exogenous mouse mammary tumor virus]
          Length = 1755

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31474.1|AF228552_3 (AF228552) Gag-Pro-Pol [Exogenous mouse mammary tumor virus]
          Length = 1755

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>ref|NP_056880.1| (NC_001503) Pr160 [Mouse mammary tumor virus]
 gb|AAC82556.1| (AF033807) Pr160 [Mouse mammary tumor virus]
          Length = 1755

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAH05685.1|AAH05685 (BC005685) Unknown (protein for IMAGE:3154990) [Mus musculus]
          Length = 404

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 296 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 332



>gb|AAF31468.1|AF228551_2 (AF228551) Gag-Pro [Exogenous mouse mammary tumor virus]
          Length = 860

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAA46542.1| (M15122) Pr160 gag pro pol precursor [Mouse mammary tumor virus]
          Length = 1753

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31463.1|AF228550_2 (AF228550) Gag-Pro [Endogenous mouse mammary tumor virus Mtv1]
          Length = 860

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>ref|NP_056881.1| (NC_001503) Pr110 [Mouse mammary tumor virus]
 gb|AAC82555.1| (AF033807) Pr110 [Mouse mammary tumor virus]
          Length = 860

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAF31473.1|AF228552_2 (AF228552) Gag-Pro [Exogenous mouse mammary tumor virus]
          Length = 860

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>gb|AAG13985.1|AF298826_1 (AF298826) ubiquitin/ribosomal protein 27a [Prunus avium]
          Length = 156

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = -1

Query: 419 YCGRCHLTYVFDQVGPD 369
           YCG+C LTYV+ + G D
Sbjct: 140 YCGKCGLTYVYQKAGGD 156



>gb|AAA46541.1| (M15122) Pr110 gag pro precursor [Mouse mammary tumor virus]
          Length = 859

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 483 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 519



>emb|CAA71132.1| (Y10024) ubiquitin extension protein [Solanum tuberosum]
          Length = 156

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 10/17 (58%), Positives = 13/17 (75%)
 Frame = -1

Query: 419 YCGRCHLTYVFDQVGPD 369
           YCG+C LTYV+ + G D
Sbjct: 140 YCGKCGLTYVYQKAGGD 156



>pir||A29029 gag polyprotein - mouse mammary tumor virus (strain C3H)
           (fragment)
 gb|AAA66623.1| (M16766) gag protein [Mouse mammary tumor virus]
          Length = 233

 Score = 29.6 bits (65), Expect = 9.3
 Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 4/37 (10%)
 Frame = -3

Query: 297 CLDAFPCVQRCSWWVPAVRGKRF--FVK--YGGPSGG 199
           CLDA P V +   +  A+RG+++  FVK  YGG  GG
Sbjct: 125 CLDASPAVVQGMAYAAAMRGQKYSTFVKQTYGGGKGG 161



  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  May 11, 2002  4:54 AM
  Number of letters in database: 289,601,141
  Number of sequences in database:  922,381
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 275,498,359
Number of Sequences: 922381
Number of extensions: 6479737
Number of successful extensions: 15030
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 14099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15024
length of database: 289,601,141
effective HSP length: 109
effective length of database: 189,061,612
effective search space used: 6995279644
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)