The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_C03_T7.seq Fgr-S3_1_C03_T7 LENGTH:387bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_C03 ; CLONELIB: n/a
(387 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK52165.1|AC084831_19 (AC084831) putative polyprotein [... 37 0.050
dbj|BAA22288.1| (D85597) polyprotein [Oryza australiensis] 34 0.25
ref|NP_043269.1| (NC_001675) strong sequence similarity to ... 30 3.6
ref|NP_150308.1| (NC_003052) NADH dehydrogenase subunit 6 [... 30 4.7
ref|NP_251634.1| (NC_002516) cobalamin biosynthetic protein... 30 6.1
>gb|AAK52165.1|AC084831_19 (AC084831) putative polyprotein [Oryza sativa]
Length = 262
Score = 36.6 bits (83), Expect = 0.050
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = -3
Query: 367 DVSPKSLPPSC*SFVMNYNISGTYMMILEIFAMFDTTKVEIKKEHQLLMV 218
D+ +SLPPS F+MN+N++ + E+ M T + IKK +MV
Sbjct: 161 DLILQSLPPSFEPFIMNFNMNNLNSSLAELHGMLKTAEESIKKNSNHVMV 210
>dbj|BAA22288.1| (D85597) polyprotein [Oryza australiensis]
Length = 1317
Score = 34.3 bits (77), Expect = 0.25
Identities = 18/53 (33%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Frame = -3
Query: 367 DVSPKSLPPSC*SFVMNYNISGTYMMILEIFAMFDTTKVEIKK--EHQLLMVN 215
DV +SLPPS F++NY+++ + E+ M T + I+K H ++M N
Sbjct: 162 DVILQSLPPSFEPFILNYHMNNMDRTLAELHGMLKTVEESIQKNGHHVMMMQN 214
>ref|NP_043269.1| (NC_001675) strong sequence similarity to FtsW, RodA, and SpoV-E
[Cyanophora paradoxa]
sp|P48280|FTSW_CYAPA Cell division protein ftsW homolog
pir||T06957 probable cell division protein ftsW - Cyanophora paradoxa cyanelle
gb|AAA81300.1| (U30821) strong sequence similarity to FtsW, RodA, and SpoV-E
[Cyanophora paradoxa]
Length = 397
Score = 30.4 bits (67), Expect = 3.6
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 119 GSTSGFSTRAATDLPFHEVSLLTLAFLETSGLIDHQQLMLLLDFYF 256
G+ G S + LP H + ++E G I L+LL+ FYF
Sbjct: 273 GTGYGISLQKTGYLPIHYTDFIFAVYIEEFGFIGAVSLLLLIIFYF 318
>ref|NP_150308.1| (NC_003052) NADH dehydrogenase subunit 6 [Spizellomyces punctatus]
gb|AAK84237.1|AF404303_11 (AF404303) NADH dehydrogenase subunit 6 [Spizellomyces punctatus]
Length = 260
Score = 30.0 bits (66), Expect = 4.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 161 PFHEVSLLTLAFLETSGLIDHQQLMLLLDFYFRGVKH 271
P H ++ L L FL S L M++LDFYF G+ +
Sbjct: 28 PIHRIAFLILVFLSGSFL------MIILDFYFLGLTY 58
>ref|NP_251634.1| (NC_002516) cobalamin biosynthetic protein CobN [Pseudomonas
aeruginosa]
pir||G83278 cobalamin biosynthetic protein CobN PA2944 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG06332.1|AE004720_8 (AE004720) cobalamin biosynthetic protein CobN [Pseudomonas
aeruginosa]
Length = 1248
Score = 29.6 bits (65), Expect = 6.1
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = +2
Query: 191 AFLETSGLIDHQQLMLLLDFYFRGVKHREYFKDHH 295
AF TS LID Q LL D Y + RE+ + H+
Sbjct: 1174 AFDATSELIDDHQYALLADAYLLDAETREFVRQHN 1208
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 171,399,450
Number of Sequences: 922381
Number of extensions: 2611329
Number of successful extensions: 4430
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4430
length of database: 289,601,141
effective HSP length: 104
effective length of database: 193,673,517
effective search space used: 4648164408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)