The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_C07_T7.seq Fgr-S3_1_C07_T7 LENGTH:370bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_C07 ; CLONELIB: n/a
(370 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_336144.1| (NC_002755) PE_PGRS family protein [Mycoba... 33 0.75
ref|NP_216167.1| (NC_000962) PE_PGRS [Mycobacterium tubercu... 33 0.75
gb|AAK98730.1|AC090485_9 (AC090485) Putative mutator-like t... 32 1.7
ref|NP_104226.1| (NC_002678) hypothetical protein, contains... 31 2.8
ref|NP_001180.1| (NM_001189) bagpipe homeobox homolog 1 (Dr... 31 2.8
ref|XP_013007.2| (XM_013007) SH3-domain binding protein 1 [... 31 2.8
ref|NP_372196.1| (NC_002758) glutamyl-tRNA reductase [Staph... 31 2.8
ref|NP_065741.2| (NM_020690) hypothetical protein FLJ14127 ... 30 3.7
dbj|BAA83037.1| (AB029008) KIAA1085 protein [Homo sapiens] 30 3.7
pir||T36628 hypothetical protein SCH35.31c - Streptomyces c... 30 3.7
gb|AAA16961.1| (U07142) variable surface glycoprotein [Tryp... 30 6.3
emb|CAB88819.1| (AL353832) hypothetical protein SCE6.15. [S... 30 6.3
ref|NP_571979.1| (NM_131904) meningioma expressed antigen 5... 29 8.3
ref|NP_384683.1| (NC_003047) FATTY ACID SYNTHASE TRANSMEMBR... 29 8.3
sp|P45415|DAPB_KLEPN Dihydrodipicolinate reductase (DHPR) >... 29 8.3
gb|AAF23275.2|AC009399_1 (AC009399) KIAA0998 [Homo sapiens] 29 8.3
gb|AAC69888.1| (AF098788) nuclear calmodulin-binding protei... 29 8.3
emb|CAA56219.1| (X79817) dihydrodipicolinate reductase [Kle... 29 8.3
sp|P46045|NIFU_FRAAL NITROGEN FIXATION PROTEIN NIFU >gi|752... 29 8.3
gb|AAF44874.1|AE003406_79 (AE003416) hypothetical protein [... 29 8.3
pir||JN0015 trp protein - fruit fly (Drosophila melanogaster) 29 8.3
gb|AAA56928.1| (M21306) photoreceptor membrane-associated p... 29 8.3
ref|XP_110915.1| (XM_110915) similar to RIKEN cDNA 2410116I... 29 8.3
pir||JU0092 trp protein - fruit fly (Drosophila melanogaster) 29 8.3
dbj|BAB69910.1| (AB060595) ORF3 [TT virus] 29 8.3
ref|NP_523566.1| (NM_078842) elbow B; elbow [Drosophila mel... 29 8.3
sp|P19334|TRP_DROME Transient receptor potential protein >g... 29 8.3
sp|P22909|A2AA_RAT Alpha-2A adrenergic receptor (Alpha-2A a... 29 8.3
ref|NP_476768.1| (NM_057420) trp-P1; Cosens-Manning mutant ... 29 8.3
dbj|BAA11026.1| (D64157) IRS-1(COS) [Cercopithecus aethiops] 29 8.3
dbj|BAA76842.1| (AB023215) KIAA0998 protein [Homo sapiens] 29 8.3
pir||JH0190 alpha-2-adrenergic receptor - rat 29 8.3
ref|NP_619697.1| (NC_003618) coat protein [Lettuce infectio... 29 8.3
gb|AAC37198.1| (L19052) merozoite surface antigen 2 [Plasmo... 29 8.3
>ref|NP_336144.1| (NC_002755) PE_PGRS family protein [Mycobacterium tuberculosis
CDC1551]
gb|AAK45958.1| (AE007032) PE_PGRS family protein [Mycobacterium tuberculosis
CDC1551]
Length = 1011
Score = 32.7 bits (73), Expect = 0.75
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -1
Query: 238 GGAGDSASSSLIGSRREALCGGAGGAA 158
GGAG +A SS IG+ GGAGGAA
Sbjct: 466 GGAGGAAGSSFIGNGGNGGAGGAGGAA 492
>ref|NP_216167.1| (NC_000962) PE_PGRS [Mycobacterium tuberculosis H37Rv]
pir||F70620 hypothetical glycine-rich protein Rv1651c - Mycobacterium
tuberculosis (strain H37RV)
emb|CAB06645.1| (Z85982) PE_PGRS [Mycobacterium tuberculosis H37Rv]
Length = 1011
Score = 32.7 bits (73), Expect = 0.75
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = -1
Query: 238 GGAGDSASSSLIGSRREALCGGAGGAA 158
GGAG +A SS IG+ GGAGGAA
Sbjct: 466 GGAGGAAGSSFIGNGGNGGAGGAGGAA 492
>gb|AAK98730.1|AC090485_9 (AC090485) Putative mutator-like transposase [Oryza sativa] [Oryza
sativa (japonica cultivar-group)]
Length = 2421
Score = 31.6 bits (70), Expect = 1.7
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -1
Query: 367 SGRPGRSGQVHINILHKSVHRMAARRTQSEMVR---TSLGLPRVRPGGAGDSASSSLIGS 197
+GR GR+ + + H A R E+V TSL R RPGG G A+ + +
Sbjct: 1482 AGRVGRAVPPD-RLTYSQGHIRAQGRRDRELVGYNFTSLLCFRERPGGTGGQAARRGVAA 1540
Query: 196 RREALCGGAGGAAN 155
RR GGAG AA+
Sbjct: 1541 RRR---GGAGKAAD 1551
>ref|NP_104226.1| (NC_002678) hypothetical protein, contains similarity to
transglycolase [Mesorhizobium loti]
dbj|BAB50012.1| (AP003001) hypothetical protein [Mesorhizobium loti]
Length = 418
Score = 30.8 bits (68), Expect = 2.8
Identities = 22/63 (34%), Positives = 27/63 (41%), Gaps = 3/63 (4%)
Frame = -1
Query: 307 RMAARRTQSEMVRTSLGLPRVRPGG---AGDSASSSLIGSRREALCGGAGGAANSIEVAD 137
R AA+R S M SL L + P G A + G R A+ GG GA D
Sbjct: 15 RNAAKRFTSVMTAASLSLALLMPAGPAFADAGFRQWVAGFRATAVAGGVSGAVYDQAFRD 74
Query: 136 LKE 128
+KE
Sbjct: 75 IKE 77
>ref|NP_001180.1| (NM_001189) bagpipe homeobox homolog 1 (Drosophila); Bagpipe homeo
box, Drosophila, homolog of; bagpipe homeobox
(Drosophila) homolog 1 [Homo sapiens]
sp|P78367|HK32_HUMAN HOMEOBOX PROTEIN NKX-3.2 (BAGPIPE HOMEOBOX PROTEIN HOMOLOG 1)
gb|AAB82783.1| (AF009801) homeodomain protein [Homo sapiens]
gb|AAB82784.1| (AF009802) homeodomain protein [Homo sapiens]
gb|AAC39536.1| (AF005260) homeodomain-containing protein BAPX1 [Homo sapiens]
Length = 333
Score = 30.8 bits (68), Expect = 2.8
Identities = 27/82 (32%), Positives = 37/82 (44%), Gaps = 4/82 (4%)
Frame = -1
Query: 319 KSVHRMAARRTQSEMVRTSLG--LPRVRPGGAGDSASSSLIGSRREALCGGAGGAANS-- 152
K + AA R+ SEM + G PR G G G+ ALC GAGG S
Sbjct: 136 KDLEEEAAGRSDSEMSASVSGDRSPRTEDDGVGPR------GAHVSALCSGAGGGGGSGP 189
Query: 151 IEVADLKEEVDAEQREEELALA 86
VA+ +EE A + ++ + A
Sbjct: 190 AGVAEEEEEPAAPKPRKKRSRA 211
>ref|XP_013007.2| (XM_013007) SH3-domain binding protein 1 [Homo sapiens]
dbj|BAB15046.1| (AK024971) unnamed protein product [Homo sapiens]
Length = 196
Score = 30.8 bits (68), Expect = 2.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 238 GGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEVDAEQREEELALATDLSWRM 65
GG DS S + + GAG A + VA + VD E L+L +SWR+
Sbjct: 22 GGTSDSVLSLVAAEAKAGAGAGAGAGAGAGVVAGVGTAVDGSSSEASLSLT--VSWRV 77
>ref|NP_372196.1| (NC_002758) glutamyl-tRNA reductase [Staphylococcus aureus subsp.
aureus Mu50]
ref|NP_374784.1| (NC_002745) glutamyl-tRNA reductase [Staphylococcus aureus subsp.
aureus N315]
sp|Q99TI9|HEM1_STAAM Glutamyl-tRNA reductase (GluTR)
dbj|BAB42763.1| (AP003134) glutamyl-tRNA reductase [Staphylococcus aureus subsp.
aureus N315]
dbj|BAB57834.1| (AP003363) glutamyl-tRNA reductase [Staphylococcus aureus subsp.
aureus Mu50]
Length = 448
Score = 30.8 bits (68), Expect = 2.8
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Frame = -1
Query: 349 SGQVHINILHKSVHRMAARRTQSEMVRTSLGLPR-VRPGGAGDSASSSLIGSRREALCGG 173
S Q +I I ++ + R+A R Q +V + +PR + PG SA +++
Sbjct: 251 SAQSYI-ITNEMIERIAENRKQDSLVLIDIAVPRDIEPG---ISAITNIF---------- 296
Query: 172 AGGAANSIEVADLKEEVDAEQREEELALAT 83
+ +V DLK VDA RE +LA AT
Sbjct: 297 ------NYDVDDLKGLVDANLRERQLAAAT 320
>ref|NP_065741.2| (NM_020690) hypothetical protein FLJ14127 [Homo sapiens]
emb|CAB66877.1| (AL136943) hypothetical protein [Homo sapiens]
Length = 942
Score = 30.4 bits (67), Expect = 3.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 355 GRSGQVHINILHKSVHRMAARRTQSEMVRTS-LGLPRVRPGGAGDSASSSLIGS 197
G S H+ +H + R S+ V TS +GLP + P G+ S+SS+ + S
Sbjct: 634 GNSVLGHLENMHPDNSKAPGFRPPSQRVSTSPVGLPSIDPSGSSPSSSSAPLAS 687
>dbj|BAA83037.1| (AB029008) KIAA1085 protein [Homo sapiens]
Length = 584
Score = 30.4 bits (67), Expect = 3.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -1
Query: 355 GRSGQVHINILHKSVHRMAARRTQSEMVRTS-LGLPRVRPGGAGDSASSSLIGS 197
G S H+ +H + R S+ V TS +GLP + P G+ S+SS+ + S
Sbjct: 291 GNSVLGHLENMHPDNSKAPGFRPPSQRVSTSPVGLPSIDPSGSSPSSSSAPLAS 344
>pir||T36628 hypothetical protein SCH35.31c - Streptomyces coelicolor
emb|CAB44396.1| (AL078610) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 180
Score = 30.4 bits (67), Expect = 3.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -1
Query: 346 GQVHINILHKSVHRMAARRTQSEMVRTSLGLPRVRPGGAGDSASS 212
G + +L +HR+ + RTQSE+ + LP +PG A++
Sbjct: 31 GLIAHEVLDGHLHRVLSARTQSELASVVVSLPPEQPGSTATIAAA 75
>gb|AAA16961.1| (U07142) variable surface glycoprotein [Trypanosoma congolense]
Length = 444
Score = 29.6 bits (65), Expect = 6.3
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Frame = -1
Query: 361 RPGRSGQVHINILHKSVHRMAARRTQSEMVRTSLGLPRVRPGGAGDSASSSLIGSRREAL 182
R R Q ++ + S+ +M A + + E L PG REAL
Sbjct: 136 RKVRQIQAEVDRVILSIQKMTANKDREEAQAAFLAAVEGEPGANKVEKGGYPKSGTREAL 195
Query: 181 CGG------AGGAANSIEVADL 134
CGG G AA VADL
Sbjct: 196 CGGGSGLTQTGSAAGHSLVADL 217
>emb|CAB88819.1| (AL353832) hypothetical protein SCE6.15. [Streptomyces coelicolor
A3(2)]
Length = 849
Score = 29.6 bits (65), Expect = 6.3
Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Frame = -1
Query: 370 SSGRPGRSGQVHINILHKSVHRMAARRTQSEMVRTSLGLPRVRPGGAGDSASSSLIGSRR 191
SS R G S + L S AA T V+ + G R G+G + SS G+RR
Sbjct: 33 SSSRSGTSAEQAFLGLQSSAGNQAATAT----VQRARGRSLERTAGSGAARPSSAPGTRR 88
Query: 190 E----ALCGGAGGAANSIEVADLKEEVDAEQREEELALAT 83
+ A G G L+++ A +R E A AT
Sbjct: 89 DPAGPARRGSESGTQGMEVDPALRDQATAARRTAEEAAAT 128
>ref|NP_571979.1| (NM_131904) meningioma expressed antigen 5 (hyaluronidase) [Rattus
norvegicus]
gb|AAK72103.1| (AY039679) O-GlcNAcase [Rattus norvegicus]
Length = 916
Score = 29.3 bits (64), Expect = 8.3
Identities = 21/67 (31%), Positives = 29/67 (42%), Gaps = 5/67 (7%)
Frame = -1
Query: 241 PGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEVDAEQREEEL-----ALATDL 77
P GAG +A + G R LCG G V + ++E+ ++ EL A D
Sbjct: 42 PSGAGAAAGTGAAGGARRFLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDDY 101
Query: 76 SWRMPWR 56
RM WR
Sbjct: 102 KHRMFWR 108
>ref|NP_384683.1| (NC_003047) FATTY ACID SYNTHASE TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
emb|CAC45149.1| (AL591784) FATTY ACID SYNTHASE TRANSMEMBRANE PROTEIN [Sinorhizobium
meliloti]
Length = 2504
Score = 29.3 bits (64), Expect = 8.3
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Frame = -1
Query: 322 HKSVHRMAARRTQSEMVRTSLGLPRVRPGGAG----DSASSSLIGSRREALCGGAGGAAN 155
H++VH +A+R +++ T + +P GA + S S SRR A GAA
Sbjct: 1346 HQAVHSVASRSRMDQVLHTVEHVLAAQPAGARLRLIELGSVSAGFSRRLADLAARNGAAL 1405
Query: 154 SIEVADLKEEVDAEQREEELALATDLSWRM 65
SI E D QR E+A D R+
Sbjct: 1406 SI-----FEPRDNAQRNLEIAFEEDAHVRV 1430
>sp|P45415|DAPB_KLEPN Dihydrodipicolinate reductase (DHPR)
pir||S60778 dihydrodipicolinate reductase (EC 1.3.1.26) - Klebsiella pneumoniae
(fragment)
Length = 185
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = -1
Query: 301 AARRTQSEMVRTSLGLPRVRPGGAGDSASSSLIGSRREALCG-GAGGAANSIEVADLKEE 125
A R ++++ +L + V G A + SSL+GS L G G G A +A +K++
Sbjct: 13 AGGRMGRQLIQAALQMEGVALGAALEREGSSLVGSDAGELAGAGKAGVAVQSSLAAVKDD 72
Query: 124 VD 119
D
Sbjct: 73 FD 74
>gb|AAF23275.2|AC009399_1 (AC009399) KIAA0998 [Homo sapiens]
Length = 1048
Score = 29.3 bits (64), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 250 RVRPGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLK 131
R RP A D+ +L+GS RE G GG+ + + ++K
Sbjct: 367 RCRPLSASDAEMKNLVGSAREKGPGKLGGSVLGLSMEEIK 406
>gb|AAC69888.1| (AF098788) nuclear calmodulin-binding protein [Gallus gallus]
Length = 757
Score = 29.3 bits (64), Expect = 8.3
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 238 GGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEVDAEQREEE 98
GG G S GS CGG ++ D +EE + E+ EEE
Sbjct: 1 GGGGGGGGGSAGGS---GPCGGDAAGTAALRAGDEEEEEEEEEEEEE 44
>emb|CAA56219.1| (X79817) dihydrodipicolinate reductase [Klebsiella pneumoniae]
Length = 186
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Frame = -1
Query: 301 AARRTQSEMVRTSLGLPRVRPGGAGDSASSSLIGSRREALCG-GAGGAANSIEVADLKEE 125
A R ++++ +L + V G A + SSL+GS L G G G A +A +K++
Sbjct: 13 AGGRMGRQLIQAALQMEGVALGAALEREGSSLVGSDAGELAGAGKAGVAVQSSLAAVKDD 72
Query: 124 VD 119
D
Sbjct: 73 FD 74
>sp|P46045|NIFU_FRAAL NITROGEN FIXATION PROTEIN NIFU
pir||T09239 nifU protein - Frankia alni
gb|AAC82977.1| (L29299) NifU [Frankia alni]
Length = 71
Score = 29.3 bits (64), Expect = 8.3
Identities = 15/39 (38%), Positives = 18/39 (45%)
Frame = -1
Query: 277 MVRTSLGLPRVRPGGAGDSASSSLIGSRREALCGGAGGA 161
M+R G PR P G SA S+ + R CGG A
Sbjct: 7 MLRGDGGTPRSSPSSRGRSAGSAEVHLRLTGACGGCSSA 45
>gb|AAF44874.1|AE003406_79 (AE003416) hypothetical protein [Drosophila melanogaster]
Length = 818
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -1
Query: 259 GLPRVRPGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEVDAEQREEELALATD 80
G P+ GG G SS GS+ GG+GG++++ A + LA A+
Sbjct: 505 GCPQCEGGGGGGGGSSKSSGSQ-----GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQ 559
Query: 79 LSWRMPWRSS 50
+ + W S
Sbjct: 560 MPYVCSWIGS 569
>pir||JN0015 trp protein - fruit fly (Drosophila melanogaster)
Length = 1274
Score = 29.3 bits (64), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 241 PGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEV 122
P G G+ GS++ GG GG A+ + A L+ V
Sbjct: 943 PNGEGEKKPLDASGSKKSITSGGTGGGASMLAAAALRASV 982
>gb|AAA56928.1| (M21306) photoreceptor membrane-associated protein [Drosophila
melanogaster]
Length = 1274
Score = 29.3 bits (64), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 241 PGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEV 122
P G G+ GS++ GG GG A+ + A L+ V
Sbjct: 943 PNGEGEKKPLDASGSKKSITSGGTGGGASMLAAAALRASV 982
>ref|XP_110915.1| (XM_110915) similar to RIKEN cDNA 2410116I05 [Mus musculus]
Length = 175
Score = 29.3 bits (64), Expect = 8.3
Identities = 22/108 (20%), Positives = 37/108 (33%), Gaps = 6/108 (5%)
Frame = -1
Query: 361 RPGRSGQVHINILHKSVHRMAARRTQSEMVRTSLGLPRV------RPGGAGDSASSSLIG 200
+P SG N++ K H RTQ M + P + + D SL+
Sbjct: 68 KPANSGD---NLMEKGKHNSKINRTQFTMASSQPSTPTITSPEYPKIPEEQDYDPKSLLM 124
Query: 199 SRREALCGGAGGAANSIEVADLKEEVDAEQREEELALATDLSWRMPWR 56
E + I+ + +R +++ + WR PWR
Sbjct: 125 EMIEVFKEDLNNSLKEIQENTVNRVKKINKRVQDIKIEIKAKWRQPWR 172
>pir||JU0092 trp protein - fruit fly (Drosophila melanogaster)
Length = 1275
Score = 29.3 bits (64), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 241 PGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEV 122
P G G+ GS++ GG GG A+ + A L+ V
Sbjct: 944 PNGEGEKKPLDASGSKKSITSGGTGGGASMLAAAALRASV 983
>dbj|BAB69910.1| (AB060595) ORF3 [TT virus]
Length = 273
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 202 GSRREALCGGAGGAANSIEVADLKE---EVDAEQREEELALATD 80
G R EA GGAGGAA+ DL + ++ +QR E A TD
Sbjct: 97 GGRGEA-DGGAGGAADEYRAEDLDDLFAAIEGDQRSETRAPRTD 139
>ref|NP_523566.1| (NM_078842) elbow B; elbow [Drosophila melanogaster]
gb|AAF53395.1| (AE003643) elB gene product [Drosophila melanogaster]
Length = 487
Score = 29.3 bits (64), Expect = 8.3
Identities = 19/70 (27%), Positives = 30/70 (42%)
Frame = -1
Query: 259 GLPRVRPGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEVDAEQREEELALATD 80
G P+ GG G SS GS+ GG+GG++++ A + LA A+
Sbjct: 314 GCPQCEGGGGGGGGSSKSSGSQ-----GGSGGSSSAAAAAAAAAASSYHAQLAALAAASQ 368
Query: 79 LSWRMPWRSS 50
+ + W S
Sbjct: 369 MPYVCSWIGS 378
>sp|P19334|TRP_DROME Transient receptor potential protein
gb|AAA28976.1| (M34394) trp protein [Drosophila melanogaster]
Length = 1275
Score = 29.3 bits (64), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 241 PGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEV 122
P G G+ GS++ GG GG A+ + A L+ V
Sbjct: 944 PNGEGEKKPLDASGSKKSITSGGTGGGASMLAAAALRASV 983
>sp|P22909|A2AA_RAT Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor) (Alpha-2AAR)
(CA2-47) (Alpha-2D adrenergic receptor)
gb|AAC24959.1| (U79031) alpha2D adrenergic receptor [Rattus norvegicus]
Length = 450
Score = 29.3 bits (64), Expect = 8.3
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -1
Query: 301 AARRTQSEMVRTSLGLPRVRPGGAGDSASSSLIGSRREALCGGAGGAANS 152
A +T++ V+ LPR PG AG AS S G R AGGA S
Sbjct: 317 AKGKTKASQVKPGDSLPRRGPGAAGPGASGSGQGEER------AGGAKAS 360
>ref|NP_476768.1| (NM_057420) trp-P1; Cosens-Manning mutant [Drosophila melanogaster]
gb|AAF56970.1| (AE003771) trp gene product [Drosophila melanogaster]
Length = 1275
Score = 29.3 bits (64), Expect = 8.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 241 PGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEV 122
P G G+ GS++ GG GG A+ + A L+ V
Sbjct: 944 PNGEGEKKPLDASGSKKSITSGGTGGGASMLAAAALRASV 983
>dbj|BAA11026.1| (D64157) IRS-1(COS) [Cercopithecus aethiops]
Length = 1251
Score = 29.3 bits (64), Expect = 8.3
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 22/69 (31%)
Frame = -1
Query: 238 GGAGDSASSS--------------------LIGSRREA--LCGGAGGAANSIEVADLKEE 125
GG+G S+SSS L G+ +E LCG AGG N + DL
Sbjct: 1135 GGSGGSSSSSEDVKRHSSASFENVWLRPGELGGAPKEPAQLCGAAGGLENGLNYIDLDLV 1194
Query: 124 VDAEQREEE 98
D +QR +E
Sbjct: 1195 KDFKQRPQE 1203
>dbj|BAA76842.1| (AB023215) KIAA0998 protein [Homo sapiens]
Length = 1226
Score = 29.3 bits (64), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 250 RVRPGGAGDSASSSLIGSRREALCGGAGGAANSIEVADLK 131
R RP A D+ +L+GS RE G GG+ + + ++K
Sbjct: 373 RCRPLSASDAEMKNLVGSAREKGPGKLGGSVLGLSMEEIK 412
>pir||JH0190 alpha-2-adrenergic receptor - rat
Length = 450
Score = 29.3 bits (64), Expect = 8.3
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -1
Query: 301 AARRTQSEMVRTSLGLPRVRPGGAGDSASSSLIGSRREALCGGAGGAANS 152
A +T++ V+ LPR PG AG AS S G R AGGA S
Sbjct: 317 AKGKTKASQVKPGDSLPRRGPGAAGPGASGSGQGEER------AGGAKAS 360
>ref|NP_619697.1| (NC_003618) coat protein [Lettuce infectious yellows virus]
gb|AAA61802.1| (U15441) coat protein [Lettuce infectious yellows virus]
prf||2113433F coat protein [Lettuce infectious yellows virus]
Length = 249
Score = 29.3 bits (64), Expect = 8.3
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Frame = -1
Query: 226 DSASSSLIGSRREALCGGAGGAA---NSIEVADLK 131
D+ +SL+ +R++ALC G GG+ N++++A+LK
Sbjct: 212 DAQLTSLMLARKQALCKGEGGSVEHYNTMQLANLK 246
>gb|AAC37198.1| (L19052) merozoite surface antigen 2 [Plasmodium falciparum]
Length = 202
Score = 29.3 bits (64), Expect = 8.3
Identities = 20/52 (38%), Positives = 23/52 (43%)
Frame = -1
Query: 238 GGAGDSASSSLIGSRREALCGGAGGAANSIEVADLKEEVDAEQREEELALAT 83
G AG SA S GS + G AGG+A S + K DAE A T
Sbjct: 44 GSAGGSAGGSAGGSAGGSAGGSAGGSAGSGDGNGAKPGADAEGSSSTPATTT 95
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,068,013
Number of Sequences: 922381
Number of extensions: 2918607
Number of successful extensions: 10550
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 9198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10485
length of database: 289,601,141
effective HSP length: 98
effective length of database: 199,207,803
effective search space used: 4780987272
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)