The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_C16_T7.seq Fgr-S3_1_C16_T7 LENGTH:465bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_C16 ; CLONELIB: n/a
(465 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ002619.1|HVAJ2619 Hordeum vulgare gypsy-like retrotra... 379 e-102
emb|AJ002617.1|HVAJ2617 Hordeum vulgare gypsy-like retrotra... 339 2e-90
dbj|AP003768.3| Oryza sativa (japonica cultivar-group) geno... 66 4e-08
emb|AL512542.1|H0522A01 Oryza sativa genomic DNA, chromosom... 64 1e-07
gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, N... 62 5e-07
dbj|AP003284.3| Oryza sativa (japonica cultivar-group) geno... 62 5e-07
dbj|AP004224.2| Oryza sativa (japonica cultivar-group) geno... 62 5e-07
gb|AC077693.19| Oryza sativa (japonica cultivar-group) chro... 60 2e-06
gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbar... 60 2e-06
gb|AC093017.8| Oryza sativa (japonica cultivar-group) chrom... 60 2e-06
gb|AC091749.8| Oryza sativa chromosome 10 clone OSJNBb0008A... 60 2e-06
gb|AC084831.6| Oryza sativa chromosome 3 clone OSJNBa0077G2... 60 2e-06
gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0... 60 2e-06
gb|AF172282.1|AF172282 Oryza sativa 60 2e-06
dbj|AP003378.4| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP003727.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP003610.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP003562.2| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP003254.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP002071.1| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
dbj|AP004031.3| Oryza sativa (japonica cultivar-group) geno... 60 2e-06
emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosom... 56 3e-05
gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P... 54 1e-04
gb|AC078839.4|AC078839 Genomic Sequence For Oryza sativa, N... 52 5e-04
dbj|AP003275.2| Oryza sativa (japonica cultivar-group) geno... 52 5e-04
gb|AC116601.1| Oryza sativa chromosome 10 clone OSJNAa0079B... 50 0.002
gb|AC074282.4| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP003546.4| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AC099040.10| Oryza sativa (japonica cultivar-group) chro... 48 0.008
gb|AF106660.1|AF106660 Lycopersicon esculentum 46 0.033
dbj|AP003709.2| Oryza sativa (japonica cultivar-group) geno... 46 0.033
dbj|AP003242.3| Oryza sativa (japonica cultivar-group) geno... 46 0.033
dbj|AB014741.1| Oryza sativa (indica cultivar-group) gypsy-... 46 0.033
dbj|AP001072.1| Oryza sativa (japonica cultivar-group) geno... 46 0.033
dbj|AP002914.2| Oryza sativa (japonica cultivar-group) geno... 46 0.033
dbj|AP002864.1| Oryza sativa (japonica cultivar-group) geno... 46 0.033
gb|AC093178.4| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OS... 44 0.13
gb|AC097446.3| Oryza sativa (japonica cultivar-group) chrom... 44 0.13
gb|AC116603.1| Genomic sequence for Oryza sativa, Nipponbar... 44 0.13
gb|AC091724.3| Oryza sativa chromosome 10 clone OSJNBa0004E... 44 0.13
gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbar... 44 0.13
gb|AC092390.3| Oryza sativa chromosome 3 clone OSJNBb0013K0... 44 0.13
dbj|AP001168.1| Oryza sativa (japonica cultivar-group) geno... 44 0.13
gb|AC080019.7|AC080019 Genomic sequence for Oryza sativa, N... 42 0.51
gb|AF050455.1|AF050455 Zea mays gypsy/Ty3-type retrotranspo... 42 0.51
dbj|AP003281.3| Oryza sativa (japonica cultivar-group) geno... 42 0.51
dbj|AP003236.3| Oryza sativa (japonica cultivar-group) geno... 42 0.51
emb|AJ009799.1|GGA9799 Gallus gallus mRNA for ABC transport... 42 0.51
gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OS... 40 2.0
gb|AC090714.8| Oryza sativa (japonica cultivar-group) chrom... 40 2.0
gb|AC090486.3| Genomic sequence for Oryza sativa (japonica... 40 2.0
gb|AC103864.2| Homo sapiens chromosome 8, clone RP11-192P9,... 40 2.0
gb|AF448416.1|AF448416 Zea mays B73 chromosome 9S bz genomi... 40 2.0
gb|AC021639.5| Drosophila melanogaster, chromosome X, regio... 40 2.0
gb|AC011697.8| Drosophila melanogaster, chromosome X, regio... 40 2.0
gb|AF000197.2|AF000197 Caenorhabditis elegans cosmid T21G5,... 40 2.0
gb|AC019246.6|AC019246 Homo sapiens, clone RP11-2K18, compl... 40 2.0
gb|AF042168.1|AF042168 Onchocerca volvulus 40 2.0
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 40 2.0
gb|AE003495.2|AE003495 Drosophila melanogaster genomic scaf... 40 2.0
gb|AF072534.1|AF072534 Capsicum annuum 40 2.0
emb|AL596174.1|AL596174 Listeria innocua Clip11262 complete... 40 2.0
emb|AL591984.1|AL591984 Listeria monocytogenes strain EGD, ... 40 2.0
emb|AJ411811.1|CAR411811 Cicer arietinum Ty3-gypsy like Ret... 40 2.0
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 40 2.0
emb|AJ411814.1|CAR411814 Cicer arietinum Ty3-gypsy like Ret... 40 2.0
emb|AJ279850.1|MMU279850 Mus musculus partial mRNA for hypo... 40 2.0
emb|AJ279839.1|MMU279839 Mus musculus partial mRNA for hypo... 40 2.0
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 40 2.0
gb|AF064741.1|AF064741 Sus scrofa 40 2.0
gb|AF051151.1|AF051151 Homo sapiens chromosome 1 map 1q41-q42 40 2.0
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 40 2.0
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 40 2.0
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 40 2.0
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 40 2.0
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 40 2.0
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 40 2.0
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 40 2.0
dbj|AB013101.1|AB013101 Lycopersicon esculentum LE-ACO4 mRN... 40 2.0
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 40 2.0
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 40 2.0
dbj|AB060695.1| Homo sapiens TLR5 mRNA for Toll-like recept... 40 2.0
dbj|AB055890.1|AB055890 Homo sapiens c-lbc mRNA for guanine... 40 2.0
dbj|AB044662.1|AB044662 Prunus persica PP-ACS1 mRNA for 1-a... 40 2.0
dbj|AP001675.1|AP001675 Homo sapiens genomic DNA, chromosom... 40 2.0
dbj|AP000855.3|AP000855 Homo sapiens genomic DNA, chromosom... 40 2.0
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 2.0
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 40 2.0
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 40 2.0
ref|XM_016090.1| Homo sapiens hypothetical protein FLJ13263... 38 7.9
ref|XM_002943.7| Homo sapiens polymerase (DNA directed), th... 38 7.9
gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbar... 38 7.9
gb|AC007120.6| Arabidopsis thaliana chromosome 2 clone T15D... 38 7.9
gb|AY057907.1| Mus musculus chromosome 2 map 62.0 cM strain... 38 7.9
gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbar... 38 7.9
gb|AC007550.70| Mus musculus chromosome 11a2 clone rp21-434... 38 7.9
gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13... 38 7.9
gb|AE005769.1| Caulobacter crescentus section 95 of 359 of... 38 7.9
ref|NM_100272.1| Arabidopsis thaliana chromosome 1 clone CH... 38 7.9
ref|NM_025125.1| Homo sapiens hypothetical protein FLJ13263... 38 7.9
gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, ... 38 7.9
gb|BC022252.1| Homo sapiens clone MGC:22197 IMAGE:4668550 38 7.9
gb|AC022463.5| Homo sapiens BAC clone RP11-562N2 from 4, co... 38 7.9
gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9,... 38 7.9
gb|L77884.1|MUSLYST Mus musculus Lyst (Lyst) mRNA, complete... 38 7.9
gb|AC079841.10| Homo sapiens 3 BAC RP11-10G15 (Roswell Park... 38 7.9
ref|NM_006596.2| Homo sapiens polymerase (DNA directed), th... 38 7.9
gb|AC079634.3|AC079634 Genomic Sequence for Oryza sativa, N... 38 7.9
gb|AC024761.1|AC024761 Caenorhabditis elegans cosmid Y38C1A... 38 7.9
gb|AF107491.1|AF107491 Hexamita sp. 38 7.9
gb|AC083855.2|AC083855 Homo sapiens chromosome 3 clone 622I... 38 7.9
gb|AY032677.1| Homo sapiens chromosome 3 map 3q13.33 38 7.9
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides 38 7.9
gb|AC024166.3|AC024166 Homo sapiens chromosome 3 clone RP11... 38 7.9
gb|AC066580.3|AC066580 Homo sapiens chromosome 3 clone RP11... 38 7.9
gb|AF035526.1|AF035526 Mus musculus 38 7.9
emb|Z74472.1|CEF23H12 Caenorhabditis elegans cosmid F23H12,... 38 7.9
emb|AL161733.20|AL161733 Human DNA sequence from clone RP11... 38 7.9
gb|AC005192.1|AC005192 Homo sapiens chromosome 7 clone CTB-... 38 7.9
gb|AF156489.1|AF156489 Homo sapiens chromosome 7 map 7q11.23 38 7.9
gb|AF002248.2|AF002248 Pisum sativum 38 7.9
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 7.9
emb|AJ290944.2|MMU290944 Mus musculus mRNA for a stretch re... 38 7.9
emb|AJ279852.1|MMU279852 Mus musculus partial mRNA for hypo... 38 7.9
emb|AJ279849.1|MMU279849 Mus musculus partial mRNA for hypo... 38 7.9
emb|AJ279847.1|MMU279847 Mus musculus partial mRNA for hypo... 38 7.9
emb|AJ279846.1|MMU279846 Mus musculus partial mRNA for hypo... 38 7.9
gb|AF052573.1|AF052573 Homo sapiens chromosome 3 map 3q13.31 38 7.9
gb|AF118559.1|AF118559 Avena fatua strain AN265 38 7.9
gb|AF095771.1|AF095771 Homo sapiens 38 7.9
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 7.9
gb|AF061027.1|AF061027 Vernicia fordii 38 7.9
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 38 7.9
gb|AC003027.1|AC003027 Arabidopsis thaliana chromosome I BA... 38 7.9
gb|AF043628.1|AF043628 Homo sapiens chromosome 3 map 3q13.3 38 7.9
emb|AL357894.6|AL357894 Human DNA sequence from clone RP11-... 38 7.9
emb|AJ293762.1|ABI293762 Snythetic construct chimeric mRNA ... 38 7.9
emb|AL356095.11|AL356095 Human DNA sequence from clone RP11... 38 7.9
emb|AL360015.25|AL360015 Human DNA sequence from clone RP11... 38 7.9
gb|AF022861.1|AF022861 Mus musculus strain BALB/c 38 7.9
gb|AF022858.1|AF022858 Mus musculus strain BALB/c 38 7.9
gb|AF022857.1|AF022857 Mus musculus strain BALB/c 38 7.9
gb|AF022856.1|AF022856 Mus musculus strain BALB/c 38 7.9
gb|AF022855.1|AF022855 Mus musculus strain BALB/c 38 7.9
gb|AF022854.1|AF022854 Mus musculus strain BALB/c 38 7.9
gb|AF005654.1|AF005654 Homo sapiens 38 7.9
emb|AL445473.7|AL445473 Human DNA sequence from clone RP11-... 38 7.9
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 7.9
emb|AJ276857.1|KPN276857 Klebsiella pneumoniae partial SL04... 38 7.9
emb|AJ276855.1|KPN276855 Klebsiella pneumoniae partial SL03... 38 7.9
emb|AJ276849.1|KPN276849 Klebsiella pneumoniae partial SL01... 38 7.9
emb|AJ276466.1|KPN276466 Klebsiella pneumoniae contig regio... 38 7.9
emb|AL162718.15|AL162718 Human DNA sequence from clone RP11... 38 7.9
emb|AJ293760.1|ABI293760 Agaricus bisporus mRNA for putativ... 38 7.9
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 7.9
emb|X03787.1|DMANTPE1 D.melanogaster Antp gene exon 1 (and ... 38 7.9
dbj|AP003287.3| Oryza sativa (japonica cultivar-group) geno... 38 7.9
emb|Y14591.1|HSFUSION Viral-cellular fusion mRNA with Human... 38 7.9
dbj|AP003794.3| Oryza sativa (japonica cultivar-group) geno... 38 7.9
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 38 7.9
dbj|AP004320.1| Oryza sativa (japonica cultivar-group) geno... 38 7.9
dbj|AP003446.2| Oryza sativa (japonica cultivar-group) geno... 38 7.9
dbj|AP002820.2| Oryza sativa (japonica cultivar-group) geno... 38 7.9
dbj|AB079057.1| Ciona intestinalis hsp40 mRNA for heat shoc... 38 7.9
dbj|AB073164.1| Arabidopsis thaliana DNA, chromosome 4 cent... 38 7.9
dbj|AB073157.1| Arabidopsis thaliana DNA, chromosome 4 cent... 38 7.9
emb|AL008626.1|HS1114G22 Human DNA sequence from clone 1114... 38 7.9
dbj|AB072357.1|AB072357 Homo sapiens mRNA for hSSH-1B, comp... 38 7.9
dbj|AP003126.2|AP003126 Homo sapiens genomic DNA, chromosom... 38 7.9
emb|AJ223714.1|SAC223714 Squalus acanthias mRNA for KvLQT p... 38 7.9
dbj|AP001485.4|AP001485 Homo sapiens genomic DNA, chromosom... 38 7.9
gb|M20704.1|DROANTPRA Drosophila melanogaster antennapedia ... 38 7.9
dbj|AK023325.1|AK023325 Homo sapiens cDNA FLJ13263 fis, clo... 38 7.9
dbj|AB047592.1|AB047592 Trichophyton mentagrophytes mRNA fo... 38 7.9
emb|Y11312.1|HSC2PI3K H.sapiens mRNA for phosphoinositide 3... 38 7.9
gb|M95823.1|DROSEQA D.melanogaster homeobox protein (antenn... 38 7.9
gb|M14497.1|DROANTPG1 D.melanogaster Antennapedia homeotic ... 38 7.9
dbj|D78130.1|D78130 Homo sapiens mRNA for squalene epoxidas... 38 7.9
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019570.1|AB019570 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019569.1|AB019569 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019568.1|AB019568 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019566.1|AB019566 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 7.9
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 7.9
emb|Y10552.1|HSNCL3PRT H.sapiens mRNA for calpain-like prot... 38 7.9
>emb|AJ002619.1|HVAJ2619 Hordeum vulgare gypsy-like retrotransposon, Romani-Hv1 (left)
Length = 1593
Score = 379 bits (191), Expect = e-102
Identities = 360/414 (86%), Gaps = 3/414 (0%)
Strand = Plus / Minus
Query: 26 tcaaacgatcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctg 85
||||||| |||||||||||| |||||||||||||||||||||| | | ||| ||||| |
Sbjct: 1365 tcaaacggtcgactacaacctaaatcgagtcatagcctgaacgcgcttggggtaatcccg 1306
Query: 86 tgataaaatccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagca 145
|||| ||||||||||||||||| ||||||||||| || |||||||||||||| |||||||
Sbjct: 1305 tgatgaaatccatgcctagcttgtcccacttccaatcgggtatcggcaatggctgtagca 1246
Query: 146 atcctgctggcttttgatgctctgcctttactct--gacatacatcacaaactgctacat 203
|||||||||| || |||||||||||||| ||||| |||| |||||||||||||| |||
Sbjct: 1245 atcctgctggtttctgatgctctgccttcactctctgacaaacatcacaaactgccacac 1186
Query: 204 actccgcaa-tatccttcttcattcctgtccactagaaactgtccttcaaatccagatac 262
||||||||| ||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 1185 actccgcaaatatccttcttcattctagtccacgagaaactgtctttcaaatccagatac 1126
Query: 263 atcttggtgtttccggggtgtatcgagtatggcgagtcatgagcttcctgaagtattaac 322
|||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| || || |||
Sbjct: 1125 atcttggtatttcctgggtgaatcgaatacggcgaatcatgtgcctcctgtagaatcaac 1066
Query: 323 ttcctgatctccgcatcattggacacataaacacgatcctcaaaccataaagtttcatgc 382
||||||||||| | ||||||| |||||| || ||||||||||||||||| | || |||
Sbjct: 1065 ttcctgatctcagggtcattgggcacatatacgcgatcctcaaaccataagatatcgtgc 1006
Query: 383 tcatcctcacgaaaacccttggcttttcctttgctcattctctcttttatctcg 436
|||||||||||||| || ||||| ||| | ||||||||||| || |||||||||
Sbjct: 1005 tcatcctcacgaaatcctttggcctttaccttgctcattctttcctttatctcg 952
>emb|AJ002617.1|HVAJ2617 Hordeum vulgare gypsy-like retrotransposon, Romani-Hv2 (right)
Length = 580
Score = 339 bits (171), Expect = 2e-90
Identities = 307/350 (87%), Gaps = 3/350 (0%)
Strand = Plus / Minus
Query: 26 tcaaacgatcgactacaacccaaatcgagtcatagcctgaacgag-ttctgggcaatcct 84
||||||| ||||||||||||||||||||||||||||||||||| | ||| ||| |||||
Sbjct: 351 tcaaacggtcgactacaacccaaatcgagtcatagcctgaacgcggttcagggtaatccc 292
Query: 85 gtgataaaatccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagc 144
||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct: 291 gtgatgaaatccatgcctagcttgtcccacttccattcgggtatcggcaatggctgtagc 232
Query: 145 aatcctgctggcttttgatgctctgcctttac--tctgacatacatcacaaactgctaca 202
|||||||||| ||| |||||||||||||| || ||| ||| || ||||||||||| |||
Sbjct: 231 aatcctgctgacttctgatgctctgccttcacactctcacaaacttcacaaactgccaca 172
Query: 203 tactccgcaatatccttcttcattcctgtccactagaaactgtccttcaaatccagatac 262
||||| ||||||||||||||||||| |||||| |||||||||| |||||||||||||||
Sbjct: 171 cactccacaatatccttcttcattccagtccaccagaaactgtctttcaaatccagatac 112
Query: 263 atcttggtgtttccggggtgtatcgagtatggcgagtcatgagcttcctgaagtattaac 322
|||||||| || || ||||| ||||| || ||||| ||||| || ||||| | || |||
Sbjct: 111 atcttggtattacctgggtgaatcgaatacggcgaatcatgtgcctcctgcaaaatcaac 52
Query: 323 ttcctgatctccgcatcattggacacataaacacgatcctcaaaccataa 372
||||||||||| | ||||||| |||||| || |||||||||||||||||
Sbjct: 51 ttcctgatctcagggtcattgggcacatacacgcgatcctcaaaccataa 2
>dbj|AP003768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0439E07
Length = 176486
Score = 65.9 bits (33), Expect = 4e-08
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
||||||||||| || ||||| |||||||| || | | |||||||||||||| || |||
Sbjct: 73888 gttctgggcaaaccggtgatgaaatccattccgatttcttcccacttccattctggaatc 73947
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttactc 178
| | ||| |||||||| ||||||||| |||| || |||||||||||||
Sbjct: 73948 tgaagtggctgtagcaaacctgctggcctttggtgttctgcctttactc 73996
>emb|AL512542.1|H0522A01 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0522A01, complete
sequence
Length = 97076
Score = 63.9 bits (32), Expect = 1e-07
Identities = 116/143 (81%), Gaps = 2/143 (1%)
Strand = Plus / Plus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
||||||||||| || |||||||||||||| || | | ||||||||||||||||| |||
Sbjct: 49692 gttctgggcaaaccagtgataaaatccataccgatttcttcccacttccattcaggaatc 49751
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttact--ctgacataca 187
||| || || | ||| || || || || ||||| |||||||| ||| |||||| |||
Sbjct: 49752 ttcaagggctgcaacaaaccggcaggtttctgatgttctgccttgactcgctgacaaaca 49811
Query: 188 tcacaaactgctacatactccgc 210
||||| |||||||| ||||||||
Sbjct: 49812 tcacatactgctacgtactccgc 49834
>gb|AC078944.5|AC078944 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0089D15, from Chromosome 10, complete sequence
[Oryza sativa (japonica cultivar-group)]
Length = 164679
Score = 61.9 bits (31), Expect = 5e-07
Identities = 136/170 (80%), Gaps = 2/170 (1%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || |||||||||
Sbjct: 74868 tcgactatcacccaaatagagtcatggcctgatgacgttctgggtaaaccagtgataaaa 74809
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||||||||||||||| ||| ||| || || ||||| || ||
Sbjct: 74808 tccataccgatttcttcccacttccattcaggaatcttcaaaggctgcagcaaaccggca 74749
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 74748 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 74699
Score = 48.1 bits (24), Expect = 0.008
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || |||||||||
Sbjct: 37031 tcgactatcacccaaatagagtcatggcctgatgacgttctgggtaaaccagtgataaaa 37090
Query: 94 tccatgcctagcttatcccacttccattcagg 125
||||| || | | |||||||||||||||||
Sbjct: 37091 tccataccgatttcttcccacttccattcagg 37122
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0671D01
Length = 163006
Score = 61.9 bits (31), Expect = 5e-07
Identities = 109/134 (81%), Gaps = 2/134 (1%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
||||||||||| || |||||||||||||| |||| | ||||| ||||||||||| |||
Sbjct: 2889 gttctgggcaaaccagtgataaaatccatacctatttcttcccatttccattcaggaatc 2830
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttact--ctgacataca 187
||| ||||| | ||| || || || || ||||| |||||||| ||| |||||| |||
Sbjct: 2829 ttcaaaggttgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 2770
Query: 188 tcacaaactgctac 201
||||| ||||||||
Sbjct: 2769 tcacatactgctac 2756
>dbj|AP004224.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1111E11, complete sequence
Length = 148724
Score = 61.9 bits (31), Expect = 5e-07
Identities = 136/170 (80%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| | || ||||| |||
Sbjct: 1536 tcgactatcacccaaatagagtcatggcctgataacgttctgggtaggccagtgatgaaa 1595
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
|||||| | | || ||||||||||||||||| ||| ||| || || ||||| |||||
Sbjct: 1596 tccatgtcgatctcctcccacttccattcaggaatcttcaaaggctgcagcaaacctgcg 1655
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 1656 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 1705
>gb|AC077693.19| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0095C07
map near C239, complete sequence
Length = 187707
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 104587 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 104528
Query: 169 gcctttactc 178
||||||||||
Sbjct: 104527 gcctttactc 104518
>gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0004A10, from chromosome 10, complete sequence
[Oryza sativa (japonica cultivar-group)]
Length = 144271
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 84656 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 84715
Query: 169 gcctttactc 178
||||||||||
Sbjct: 84716 gcctttactc 84725
>gb|AC093017.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
map S2606, complete sequence
Length = 124138
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 32100 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 32041
Query: 169 gcctttactc 178
||||||||||
Sbjct: 32040 gcctttactc 32031
>gb|AC091749.8| Oryza sativa chromosome 10 clone OSJNBb0008A05 map R10752SB, complete
sequence
Length = 150465
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 25548 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 25489
Query: 169 gcctttactc 178
||||||||||
Sbjct: 25488 gcctttactc 25479
>gb|AC084831.6| Oryza sativa chromosome 3 clone OSJNBa0077G22 map near R606A, complete
sequence
Length = 167288
Score = 60.0 bits (30), Expect = 2e-06
Identities = 84/101 (83%), Gaps = 2/101 (1%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
||||||||||||||||| ||| ||| || || ||||| ||||| || || ||||| |||
Sbjct: 156742 tcccacttccattcaggaatcttcaaaggctgcagcaaacctgcgggtttctgatgttct 156683
Query: 169 gcctttact--ctgacatacatcacaaactgctacatactc 207
||||| ||| |||||| |||||||| |||||||| |||||
Sbjct: 156682 gccttgactcgctgacaaacatcacatactgctacgtactc 156642
>gb|AC090054.2|AC090054 Oryza sativa chromosome 9 clone PAC0645D04, complete sequence
Length = 139050
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 58343 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 58284
Query: 169 gcctttactc 178
||||||||||
Sbjct: 58283 gcctttactc 58274
>gb|AF172282.1|AF172282 Oryza sativa
Length = 339485
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 246539 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 246598
Query: 169 gcctttactc 178
||||||||||
Sbjct: 246599 gcctttactc 246608
>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0047E11
Length = 148109
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 37610 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 37669
Query: 169 gcctttactc 178
||||||||||
Sbjct: 37670 gcctttactc 37679
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0051H17
Length = 187471
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 68708 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 68649
Query: 169 gcctttactc 178
||||||||||
Sbjct: 68648 gcctttactc 68639
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0672D08
Length = 173729
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 110701 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 110642
Query: 169 gcctttactc 178
||||||||||
Sbjct: 110641 gcctttactc 110632
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0402A09
Length = 141966
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 97829 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 97770
Query: 169 gcctttactc 178
||||||||||
Sbjct: 97769 gcctttactc 97760
>dbj|AP003562.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1108H10, complete sequence
Length = 101751
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 31406 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 31465
Query: 169 gcctttactc 178
||||||||||
Sbjct: 31466 gcctttactc 31475
>dbj|AP003254.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0454A11
Length = 152240
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 105875 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 105934
Query: 169 gcctttactc 178
||||||||||
Sbjct: 105935 gcctttactc 105944
>dbj|AP002071.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0675A05
Length = 131972
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 24078 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 24019
Query: 169 gcctttactc 178
||||||||||
Sbjct: 24018 gcctttactc 24009
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0432C03
Length = 164394
Score = 60.0 bits (30), Expect = 2e-06
Identities = 60/70 (85%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | ||| |||||||| ||||||||| |||| || |||
Sbjct: 114091 tcccacttccattctggaatctgaagtggctgtagcaaacctgctggcctttggtgttct 114032
Query: 169 gcctttactc 178
||||||||||
Sbjct: 114031 gcctttactc 114022
>emb|AL512543.1|H0505A02 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0505A02, complete
sequence
Length = 83989
Score = 56.0 bits (28), Expect = 3e-05
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| ||||||||||| || |||||||||
Sbjct: 32957 tcgactattacccaaatagagtcatggcctgatgacgttctgggcaaaccagtgataaaa 32898
Query: 94 tccatgcctagcttatcccacttccattcagg 125
||||| || | | |||||||||||||||||
Sbjct: 32897 tccataccgatttcttcccacttccattcagg 32866
Score = 46.1 bits (23), Expect = 0.033
Identities = 107/134 (79%), Gaps = 2/134 (1%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
|||||||| || || |||||||||||||| || | | ||||||||||||||||| |||
Sbjct: 66343 gttctgggtaaaccagtgataaaatccataccgatttcttcccacttccattcaggaatc 66284
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttact--ctgacataca 187
||| || || | ||| || || || || ||||| |||||||| ||| |||||| |||
Sbjct: 66283 ttcaaaggctgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 66224
Query: 188 tcacaaactgctac 201
||||| ||||||||
Sbjct: 66223 tcacatactgctac 66210
>gb|AC093568.2| Oryza sativa chromosome 10 clone OSJNBa0029P16, complete sequence
Length = 173644
Score = 54.0 bits (27), Expect = 1e-04
Identities = 135/170 (79%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || |||||||||
Sbjct: 36760 tcgactatcacccaaatagagtcatggcctgatgacgttctgggtaaaccagtgataaaa 36819
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||||||||||||||| ||| ||| || || | ||| || ||
Sbjct: 36820 tccataccgatttcttcccacttccattcaggaatcttcaaaggctgcaacaaaccggcg 36879
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 36880 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 36929
>gb|AC078839.4|AC078839 Genomic Sequence For Oryza sativa, Nipponbare Strain, Chromosome X,
Clone OSJNBa0094J09, complete sequence
Length = 168192
Score = 52.0 bits (26), Expect = 5e-04
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
|||||||||||||| || ||| | | | | |||||||| ||||||||| |||| || |||
Sbjct: 4436 tcccacttccattctggaatctgaagtagctgtagcaaacctgctggcctttggtgttct 4377
Query: 169 gcctttactc 178
||||||||||
Sbjct: 4376 gcctttactc 4367
>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0514H03
Length = 167230
Score = 52.0 bits (26), Expect = 5e-04
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 246 ccttcaaatccagatacatcttggtgtttccggggtgtatcgagtatggcgagtcatgag 305
||||||||||| | ||||| ||||| |||||||||||| ||||||| ||| || ||||
Sbjct: 99086 ccttcaaatcctggtacattttggtacttccggggtgtaatgagtatgccgactcgtgag 99145
Query: 306 cttcct 311
||||||
Sbjct: 99146 cttcct 99151
Score = 46.1 bits (23), Expect = 0.033
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 88 ataaaatccatgcctagcttatcccacttccattc 122
|||||||||||||||| || |||||| ||||||||
Sbjct: 98926 ataaaatccatgcctatctcatcccatttccattc 98960
>gb|AC116601.1| Oryza sativa chromosome 10 clone OSJNAa0079B05, complete sequence
Length = 159382
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| ||||||||||| || |||||||||
Sbjct: 153420 tcgactattacccaaatagagtcatggcctgatgacgttctgggcaaaccagtgataaaa 153361
Query: 94 tccat 98
|||||
Sbjct: 153360 tccat 153356
>gb|AC074282.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0049K09, complete sequence
Length = 146576
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| ||||||||||| || |||||||||
Sbjct: 54038 tcgactattacccaaatagagtcatggcctgatgacgttctgggcaaaccagtgataaaa 53979
Query: 94 tccat 98
|||||
Sbjct: 53978 tccat 53974
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0672C09
Length = 145655
Score = 50.1 bits (25), Expect = 0.002
Identities = 139/176 (78%), Gaps = 2/176 (1%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| ||||| ||||| || |||||||||
Sbjct: 136946 tcgactattacccaaatagagtcatggcctgatgacgttctaggcaaaccagtgataaaa 136887
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||| |||||| |||| ||| ||| ||||| ||||| || ||
Sbjct: 136886 tccataccgatttcttcccatttccatccaggaatcttcaaaggttgcagcaaaccggcg 136827
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctacatactc 207
|| || ||||| || ||||| ||| |||||| |||||||| |||||||| |||||
Sbjct: 136826 ggtttctgatgttccgccttgactcgctgacaaacatcacatactgctacgtactc 136771
>gb|AC099040.10| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0004P12 map G1125, complete sequence
Length = 137029
Score = 48.1 bits (24), Expect = 0.008
Identities = 135/171 (78%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 33 atcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaa 92
|||||||| ||||| || ||||||| |||||| |||||||| || || ||||||||
Sbjct: 11011 atcgactattacccatatagagtcatggcctgatgacgttctgggtaaaccagtgataaa 11070
Query: 93 atccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgc 152
|||||| || | | ||||||||||||||||| ||| ||| || || | ||| || ||
Sbjct: 11071 atccataccgatttcttcccacttccattcaggaatcttcaaaggctgcaacaaaccggc 11130
Query: 153 tggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 11131 aggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 11181
>gb|AF106660.1|AF106660 Lycopersicon esculentum
Length = 1446
Score = 46.1 bits (23), Expect = 0.033
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtatcaa 29
|||||||||||||||||||||||
Sbjct: 12 gcggccgcccgggcaggtatcaa 34
>dbj|AP003709.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBb0006H05
Length = 154821
Score = 46.1 bits (23), Expect = 0.033
Identities = 134/170 (78%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || || ||||||
Sbjct: 148667 tcgactatcacccaaatagagtcatggcctgatgacgttctgggtaaaccagtaataaaa 148726
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||| ||||||||||| ||| ||| ||||| | ||| || ||
Sbjct: 148727 tccataccaatttcttcccatttccattcaggaatcttcaaaggttgcaacaaaccggcg 148786
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 148787 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 148836
>dbj|AP003242.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0414E03
Length = 139598
Score = 46.1 bits (23), Expect = 0.033
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 148 cctgctggcttttgatgctctgcctttactc 178
||||||||| |||||||||||||||| ||||
Sbjct: 83788 cctgctggcctttgatgctctgccttcactc 83818
>dbj|AB014741.1| Oryza sativa (indica cultivar-group) gypsy-type retrotransposon
RIRE8B DNA, internal region, complete sequence
Length = 5981
Score = 46.1 bits (23), Expect = 0.033
Identities = 134/170 (78%), Gaps = 2/170 (1%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || |||||||||
Sbjct: 4960 tcgactatcacccaaatagagtcatggcctgatgacgttctgggtaaaccagtgataaaa 4901
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||| ||||||||||| ||| ||| || || | ||| || ||
Sbjct: 4900 tccataccgatttcttcccatttccattcaggaatcttcaaaggctgcaacaaaccggca 4841
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 4840 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 4791
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0025D05
Length = 145684
Score = 46.1 bits (23), Expect = 0.033
Identities = 47/54 (87%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 141 tagcaatcctgctggcttttgatgctctgcctttact--ctgacatacatcaca 192
|||||| ||||||||| |||| || |||||||||||| |||||| ||||||||
Sbjct: 103090 tagcaaacctgctggcctttggtgttctgcctttactcgctgacagacatcaca 103143
>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0493G01
Length = 167587
Score = 46.1 bits (23), Expect = 0.033
Identities = 134/170 (78%), Gaps = 2/170 (1%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| ||||| || || || |||||||||
Sbjct: 80301 tcgactatcacccaaatagagtcatggcctgatgatgttctaggtaaaccagtgataaaa 80360
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||| ||||||||||| ||| ||| || || ||||| || ||
Sbjct: 80361 tccataccgatttcttcccatttccattcaggaatcttcaaaggctgcagcaaaccggcg 80420
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 80421 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 80470
>dbj|AP002864.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0033B09, complete sequence
Length = 63489
Score = 46.1 bits (23), Expect = 0.033
Identities = 134/170 (78%), Gaps = 2/170 (1%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || || ||||||
Sbjct: 43522 tcgactatcacccaaatagagtcatggcctgatgatgttctgggtaaaccagtaataaaa 43463
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| || | | ||||| ||||||||||| ||| ||| ||||| | ||| || ||
Sbjct: 43462 tccataccaatttcttcccatttccattcaggaatcttcaaaggttgcaacaaaccggcg 43403
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 43402 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 43353
>gb|AC093178.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBb0091B12, complete sequence
Length = 137568
Score = 44.1 bits (22), Expect = 0.13
Identities = 106/133 (79%), Gaps = 2/133 (1%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
|||||||| || || |||||||||||||| || | | ||||||||||||||||| |||
Sbjct: 2978 gttctgggtaaaccagtgataaaatccataccgatttcttcccacttccattcaggaatc 2919
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttact--ctgacataca 187
||| || || | ||| || || || || ||||| |||||||| ||| |||||| |||
Sbjct: 2918 ttcaaaggctgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 2859
Query: 188 tcacaaactgcta 200
||||| |||||||
Sbjct: 2858 tcacatactgcta 2846
>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
sequence, complete sequence [Oryza sativa (japonica
cultivar-group)]
Length = 144544
Score = 44.1 bits (22), Expect = 0.13
Identities = 109/137 (79%), Gaps = 2/137 (1%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
|||||||| || || |||||||||||||| || | | ||||| ||||||||||| |||
Sbjct: 69447 gttctgggtaaaccagtgataaaatccataccgatttcttcccatttccattcaggaatc 69388
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttactc--tgacataca 187
||| || || | ||| || || || || ||||| |||||||| |||| ||||| |||
Sbjct: 69387 ttcaaaggctgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 69328
Query: 188 tcacaaactgctacata 204
||||| |||||||||||
Sbjct: 69327 tcacatactgctacata 69311
Score = 40.1 bits (20), Expect = 2.0
Identities = 86/107 (80%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 88 ataaaatccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaat 147
||||||||||| |||| | ||||||||||| || || ||| ||| ||||||| ||
Sbjct: 17603 ataaaatccattcctatttcttcccacttccactctggaatcttcaacggttgtaacaga 17662
Query: 148 cctgctggcttttgatgctctgccttta--ctctgacatacatcaca 192
|| |||||||| ||||| |||||||| | | |||||||||||||||
Sbjct: 17663 ccggctggcttctgatgttctgccttgacccgctgacatacatcaca 17709
>gb|AC097446.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBa0034B05, complete sequence
Length = 175061
Score = 44.1 bits (22), Expect = 0.13
Identities = 109/137 (79%), Gaps = 2/137 (1%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
|||||||| || || |||||||||||||| || | | ||||| ||||||||||| |||
Sbjct: 33030 gttctgggtaaaccagtgataaaatccataccgatttcttcccatttccattcaggaatc 32971
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttactc--tgacataca 187
||| || || | ||| || || || || ||||| |||||||| |||| ||||| |||
Sbjct: 32970 ttcaaaggctgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 32911
Query: 188 tcacaaactgctacata 204
||||| |||||||||||
Sbjct: 32910 tcacatactgctacata 32894
Score = 44.1 bits (22), Expect = 0.13
Identities = 109/137 (79%), Gaps = 2/137 (1%)
Strand = Plus / Plus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
|||||||| || || |||||||||||||| || | | ||||| ||||||||||| |||
Sbjct: 30474 gttctgggtaaaccagtgataaaatccataccgatttcttcccatttccattcaggaatc 30533
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttactc--tgacataca 187
||| || || | ||| || || || || ||||| |||||||| |||| ||||| |||
Sbjct: 30534 ttcaaaggctgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 30593
Query: 188 tcacaaactgctacata 204
||||| |||||||||||
Sbjct: 30594 tcacatactgctacata 30610
Score = 42.1 bits (21), Expect = 0.51
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccat 98
||||||||||| || ||||||||||||||
Sbjct: 3611 gttctgggcaaaccagtgataaaatccat 3583
Score = 40.1 bits (20), Expect = 2.0
Identities = 136/171 (79%), Gaps = 4/171 (2%)
Strand = Plus / Minus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacga-gttctgggcaatcctgtgataaa 92
||||||| |||||||| ||||||| |||| || || ||| ||||||| || ||||||||
Sbjct: 119840 tcgactatcacccaaatagagtcatggcct-aatgacgttttgggcaaaccagtgataaa 119782
Query: 93 atccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgc 152
|||||| || | | ||||| ||||||||||| ||| ||| || || | ||| || ||
Sbjct: 119781 atccataccgatttcttcccatttccattcaggaatcttcaaaggctgcaacaaaccggc 119722
Query: 153 tggcttttgatgctctgcctttact--ctgacatacatcacaaactgctac 201
|| || ||||| |||||||| ||| |||||| |||||||| ||||||||
Sbjct: 119721 gggtttctgatgttctgccttgactcgctgacaaacatcacatactgctac 119671
>gb|AC116603.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBb0015J03, from chromosome 10, complete sequence
[Oryza sativa (japonica cultivar-group)]
Length = 135940
Score = 44.1 bits (22), Expect = 0.13
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 149 ctgctggcttttgatgctctgcctttactc 178
|||||||| ||||||| |||||||||||||
Sbjct: 84933 ctgctggcctttgatgttctgcctttactc 84962
>gb|AC091724.3| Oryza sativa chromosome 10 clone OSJNBa0004E08, complete sequence
Length = 158294
Score = 44.1 bits (22), Expect = 0.13
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
||||| ||||| || |||||||||||||| || | || ||||| ||||| || || |||
Sbjct: 136860 gttcttggcaaaccggtgataaaatccattccgatctcttcccatttccactcgggaatc 136801
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttactct 179
|| | ||||| |||| || |||||| | |||||||||||||| |||||
Sbjct: 136800 ggtaggggttgcagcagaccagctggcctctgatgctctgccttgactct 136751
>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0048F08, from chromosome 3, complete sequence [Oryza
sativa (japonica cultivar-group)]
Length = 155790
Score = 44.1 bits (22), Expect = 0.13
Identities = 109/137 (79%), Gaps = 2/137 (1%)
Strand = Plus / Minus
Query: 70 gttctgggcaatcctgtgataaaatccatgcctagcttatcccacttccattcaggtatc 129
|||||||| || || || ||||||||||| |||| | ||||| ||||||||||| |||
Sbjct: 37175 gttctgggtaaaccagtaataaaatccatacctatttcttcccatttccattcaggaatc 37116
Query: 130 ggcaatggttgtagcaatcctgctggcttttgatgctctgcctttactc--tgacataca 187
||| || || | ||| || || || || ||||| |||||||| |||| ||||| |||
Sbjct: 37115 ttcaaaggctgcaacaaaccggcgggtttctgatgttctgccttgactcgctgacaaaca 37056
Query: 188 tcacaaactgctacata 204
||||| |||||||||||
Sbjct: 37055 tcacatactgctacata 37039
>gb|AC092390.3| Oryza sativa chromosome 3 clone OSJNBb0013K08 map E1419S, complete
sequence
Length = 120116
Score = 44.1 bits (22), Expect = 0.13
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 79 aatcctgtgataaaatccatgcctagcttatcccacttccattcaggtat 128
||||| |||||||||||||| |||| | |||||| ||||| ||||||||
Sbjct: 89748 aatccagtgataaaatccattcctatttcatcccatttccactcaggtat 89699
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
clone:P0425F02
Length = 176979
Score = 44.1 bits (22), Expect = 0.13
Identities = 136/173 (78%), Gaps = 2/173 (1%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || || ||||||
Sbjct: 36134 tcgactatcacccaaatagagtcatggcctgatgacgttctgggtaaaccagtaataaaa 36193
Query: 94 tccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgct 153
||||| |||| | ||||| ||||||||||| ||| ||| || || | ||| || ||
Sbjct: 36194 tccatacctatttcttcccatttccattcaggaatcttcaaaggctgcaacaaaccggcg 36253
Query: 154 ggcttttgatgctctgcctttact--ctgacatacatcacaaactgctacata 204
|| || ||||| |||||||| ||| |||||| |||||||| ||||| |||||
Sbjct: 36254 ggtttctgatgttctgccttgactcgctgacaaacatcacatactgccacata 36306
Score = 44.1 bits (22), Expect = 0.13
Identities = 139/177 (78%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 33 atcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaa 92
|||||||| |||||||| || |||| |||||| |||||||| || || ||||||||
Sbjct: 13865 atcgactatcacccaaatagaatcatggcctgatgacgttctgggtaaaccggtgataaa 13924
Query: 93 atccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaatcctgc 152
|||||| || | | ||||| ||||||||||| ||| || || || ||||| || ||
Sbjct: 13925 atccataccgatttcttcccatttccattcaggaatctttaaaggctgcagcaaaccggc 13984
Query: 153 tggcttttgatgctctgcctttact--ctgacatacatcacaaactgctacatactc 207
|| || ||||| |||||||| ||| |||||| |||||||| |||||||| |||||
Sbjct: 13985 aggtttctgatgttctgccttgactcgctgacaaacatcacatactgctacgtactc 14041
>gb|AC080019.7|AC080019 Genomic sequence for Oryza sativa, Nipponbare strain clone OSJNBa0094H10,
from chromosome X, complete sequence [Oryza sativa
(japonica cultivar-group)]
Length = 149654
Score = 42.1 bits (21), Expect = 0.51
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 34 tcgactacaacccaaatcgagtcatagcctgaacgagttctgggcaatcctgtgataaaa 93
||||||| |||||||| ||||||| |||||| |||||||| || || |||||||||
Sbjct: 121793 tcgactattacccaaatagagtcatggcctgatgacgttctgggtaaaccagtgataaaa 121852
Query: 94 tccat 98
|||||
Sbjct: 121853 tccat 121857
>gb|AF050455.1|AF050455 Zea mays gypsy/Ty3-type retrotransposon Tekay, complete sequence
Length = 12118
Score = 42.1 bits (21), Expect = 0.51
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 245 tccttcaaatccagatacatcttggtgtttccggggtgtatcgagtatggcgagtcatga 304
|||||||||||| | |||||||| || |||| ||||| || ||||| | ||| ||||||
Sbjct: 8172 tccttcaaatcctggtacatctttgtacttccagggtgaatagagtaagccgaatcatga 8113
Query: 305 gcttc 309
|||||
Sbjct: 8112 gcttc 8108
>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0560B06
Length = 161720
Score = 42.1 bits (21), Expect = 0.51
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 142 agcaatcctgctggcttttgatgctctgcctttactc 178
||||| ||||||||| |||| ||||||||||| ||||
Sbjct: 55437 agcaaacctgctggcctttggtgctctgccttcactc 55473
>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0043B10
Length = 167399
Score = 42.1 bits (21), Expect = 0.51
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 142 agcaatcctgctggcttttgatgctctgcctttactc 178
||||| ||||||||| |||| ||||||||||| ||||
Sbjct: 11351 agcaaacctgctggcctttggtgctctgccttcactc 11387
>emb|AJ009799.1|GGA9799 Gallus gallus mRNA for ABC transporter protein
Length = 4018
Score = 42.1 bits (21), Expect = 0.51
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtatcaaac 31
||||||||||||||||||| |||||
Sbjct: 32 gcggccgcccgggcaggtagcaaac 56
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic
sequence, complete sequence [Oryza sativa (japonica
cultivar-group)]
Length = 138826
Score = 40.1 bits (20), Expect = 2.0
Identities = 86/107 (80%), Gaps = 2/107 (1%)
Strand = Plus / Plus
Query: 88 ataaaatccatgcctagcttatcccacttccattcaggtatcggcaatggttgtagcaat 147
||||||||||| |||| | ||||||||||| || || ||| ||| ||||||| ||
Sbjct: 95058 ataaaatccattcctatttcttcccacttccactctggaatcttcaacggttgtaacaga 95117
Query: 148 cctgctggcttttgatgctctgccttta--ctctgacatacatcaca 192
|| |||||||| ||||| |||||||| | | |||||||||||||||
Sbjct: 95118 ccggctggcttctgatgttctgccttgacccgctgacatacatcaca 95164
>gb|AC090714.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0031G04
map near R606A, complete sequence
Length = 137291
Score = 40.1 bits (20), Expect = 2.0
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 85 gtgataaaatccatgcctagcttatcccacttccattcaggtat 128
|||||||||||||| |||| | |||||| ||||||||| ||||
Sbjct: 88926 gtgataaaatccattcctatttcatcccatttccattcatgtat 88969
>gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
Nipponbare clone OSJNBa0093I09, from Chromosome 10,
complete sequence
Length = 172434
Score = 40.1 bits (20), Expect = 2.0
Identities = 77/95 (81%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 109 tcccacttccattcaggtatcggcaatggttgtagcaatcctgctggcttttgatgctct 168
||||| ||||||||||| ||| ||| || || ||||| ||| | || || ||||| |||
Sbjct: 50709 tcccatttccattcaggaatcttcaaaggctgcagcaaacctacgggtttctgatgttct 50768
Query: 169 gcctttact--ctgacatacatcacaaactgctac 201
||||| ||| |||||| |||||||| ||||||||
Sbjct: 50769 gccttgactcgctgacaaacatcacatactgctac 50803
>gb|AC103864.2| Homo sapiens chromosome 8, clone RP11-192P9, complete sequence
Length = 164867
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 400 cttggcttttcctttgctca 419
||||||||||||||||||||
Sbjct: 101099 cttggcttttcctttgctca 101080
>gb|AF448416.1|AF448416 Zea mays B73 chromosome 9S bz genomic region
Length = 106186
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 136 ggttgtagcaatcctgctgg 155
||||||||||||||||||||
Sbjct: 52795 ggttgtagcaatcctgctgg 52814
>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
BACR02C24, complete sequence
Length = 234783
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 364 aaaccataaagtttcatgct 383
||||||||||||||||||||
Sbjct: 20332 aaaccataaagtttcatgct 20351
>gb|AC011697.8| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
BACR12J05, complete sequence
Length = 203853
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 364 aaaccataaagtttcatgct 383
||||||||||||||||||||
Sbjct: 60049 aaaccataaagtttcatgct 60030
>gb|AF000197.2|AF000197 Caenorhabditis elegans cosmid T21G5, complete sequence
Length = 32028
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 184 tacatcacaaactgctacat 203
||||||||||||||||||||
Sbjct: 12591 tacatcacaaactgctacat 12572
>gb|AC019246.6|AC019246 Homo sapiens, clone RP11-2K18, complete sequence
Length = 154984
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 400 cttggcttttcctttgctca 419
||||||||||||||||||||
Sbjct: 113310 cttggcttttcctttgctca 113291
>gb|AF042168.1|AF042168 Onchocerca volvulus
Length = 2377
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 22 gcggccgcccgggcaggtat 41
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 845 tacctcggccgcgaccacgc 864
>gb|AE003495.2|AE003495 Drosophila melanogaster genomic scaffold 142000013386053 section 12
of 30, complete sequence
Length = 308373
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 364 aaaccataaagtttcatgct 383
||||||||||||||||||||
Sbjct: 2935 aaaccataaagtttcatgct 2916
>gb|AF072534.1|AF072534 Capsicum annuum
Length = 792
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtat 45
>emb|AL596174.1|AL596174 Listeria innocua Clip11262 complete genome, segment 12/12
Length = 96208
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 365 aaccataaagtttcatgctc 384
||||||||||||||||||||
Sbjct: 62998 aaccataaagtttcatgctc 63017
>emb|AL591984.1|AL591984 Listeria monocytogenes strain EGD, complete genome, segment 12/12
Length = 225528
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 365 aaccataaagtttcatgctc 384
||||||||||||||||||||
Sbjct: 192372 aaccataaagtttcatgctc 192391
>emb|AJ411811.1|CAR411811 Cicer arietinum Ty3-gypsy like Retrotransposon CaRep and partial pol
gene for polyprotein including RNAse and integrase, clone
DOM5x-15
Length = 1965
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtat 128
||||||||||||||||||||
Sbjct: 1197 tcccacttccattcaggtat 1178
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 528 tacctcggccgcgaccacgc 547
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggta 25
|||||||||||||||||||
Sbjct: 4 gcggccgcccgggcaggta 22
>emb|AJ411814.1|CAR411814 Cicer arietinum Ty3-gypsy like Retrotransposon CaRep and partial pol
gene for polyprotein including RNAse and Integrase, PPT
and 3'LTR, clone pCaEr915
Length = 4755
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 109 tcccacttccattcaggtat 128
||||||||||||||||||||
Sbjct: 1197 tcccacttccattcaggtat 1178
>emb|AJ279850.1|MMU279850 Mus musculus partial mRNA for hypothetical protein, clone mvx2011
Length = 256
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 252 gcggccgcccgggcaggtat 233
>emb|AJ279839.1|MMU279839 Mus musculus partial mRNA for hypothetical protein, clone
mvx11075
Length = 277
Score = 40.1 bits (20), Expect = 2.0
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtatcaaa 30
|||||||||||||||||| |||||
Sbjct: 5 gcggccgcccgggcaggtgtcaaa 28
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 510 tacctcggccgcgaccacgc 529
>gb|AF064741.1|AF064741 Sus scrofa
Length = 1976
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 19 gcggccgcccgggcaggtat 38
>gb|AF051151.1|AF051151 Homo sapiens chromosome 1 map 1q41-q42
Length = 3431
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 17 gcggccgcccgggcaggtat 36
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 76 tacctcggccgcgaccacgc 57
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 39 tacctcggccgcgaccacgc 20
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7 gcggccgcccgggcaggta 25
|||||||||||||||||||
Sbjct: 422 gcggccgcccgggcaggta 404
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 51 tacctcggccgcgaccacgc 32
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7 gcggccgcccgggcaggta 25
|||||||||||||||||||
Sbjct: 734 gcggccgcccgggcaggta 716
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 402 tacctcggccgcgaccacgc 421
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 683 tacctcggccgcgaccacgc 702
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggta 25
|||||||||||||||||||
Sbjct: 35 gcggccgcccgggcaggta 53
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 428 tacctcggccgcgaccacgc 447
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 283 tacctcggccgcgaccacgc 302
>dbj|AB013101.1|AB013101 Lycopersicon esculentum LE-ACO4 mRNA for
1-aminocyclopropane-1-carboxylate oxidase, complete cds
Length = 1272
Score = 40.1 bits (20), Expect = 2.0
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtatcaaa 30
||||||||||||||||||| ||||
Sbjct: 5 gcggccgcccgggcaggtagcaaa 28
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 22 tacctcggccgcgaccacgc 3
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 406 tacctcggccgcgaccacgc 425
>dbj|AB060695.1| Homo sapiens TLR5 mRNA for Toll-like receptor 5, complete cds
Length = 3431
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 17 gcggccgcccgggcaggtat 36
>dbj|AB055890.1|AB055890 Homo sapiens c-lbc mRNA for guanine nucleotide exchange factor Lbc,
complete cds
Length = 10156
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 aggcggccgcccgggcaggt 24
||||||||||||||||||||
Sbjct: 130 aggcggccgcccgggcaggt 111
>dbj|AB044662.1|AB044662 Prunus persica PP-ACS1 mRNA for 1-aminocyclopropane-1-carboxylate
synthase, complete cds
Length = 1746
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 gcggccgcccgggcaggtat 26
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtat 24
>dbj|AP001675.1|AP001675 Homo sapiens genomic DNA, chromosome 21q, section 19/105
Length = 340000
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 219 tcttcattcctgtccactag 238
||||||||||||||||||||
Sbjct: 300702 tcttcattcctgtccactag 300721
>dbj|AP000855.3|AP000855 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B697D18,
LL56-APP region, complete sequence
Length = 142223
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 219 tcttcattcctgtccactag 238
||||||||||||||||||||
Sbjct: 132373 tcttcattcctgtccactag 132392
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgc 2
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7 gcggccgcccgggcaggta 25
|||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggta 279
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgc 2
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 40.1 bits (20), Expect = 2.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 445 tacctcggccgcgaccacgc 464
||||||||||||||||||||
Sbjct: 313 tacctcggccgcgaccacgc 332
>ref|XM_016090.1| Homo sapiens hypothetical protein FLJ13263 (FLJ13263), mRNA
Length = 2032
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 235 ctagaaactgtccttcaaa 253
|||||||||||||||||||
Sbjct: 503 ctagaaactgtccttcaaa 521
>ref|XM_002943.7| Homo sapiens polymerase (DNA directed), theta (POLQ), mRNA
Length = 9045
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 245 tccttcaaatccagataca 263
|||||||||||||||||||
Sbjct: 7645 tccttcaaatccagataca 7663
>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNAa0082N11, from chromosome 10, complete sequence
[Oryza sativa (japonica cultivar-group)]
Length = 127525
Score = 38.2 bits (19), Expect = 7.9
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 88 ataaaatccatgcctagcttatcccacttccattc 122
||||||||||| |||| || |||||| ||||||||
Sbjct: 53616 ataaaatccatacctatctcatcccatttccattc 53650
>gb|AC007120.6| Arabidopsis thaliana chromosome 2 clone T15D9 map mi421, complete
sequence
Length = 102331
Score = 38.2 bits (19), Expect = 7.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 76 ggcaatcctgtgataaaatccat 98
|||||||| ||||||||||||||
Sbjct: 45424 ggcaatccagtgataaaatccat 45446
>gb|AY057907.1| Mus musculus chromosome 2 map 62.0 cM strain C57BL/6J
Length = 80945
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 214 atccttcttcattcctgtc 232
|||||||||||||||||||
Sbjct: 33364 atccttcttcattcctgtc 33382
>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0082N11, from chromosome 10, complete sequence [Oryza
sativa (japonica cultivar-group)]
Length = 183345
Score = 38.2 bits (19), Expect = 7.9
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 88 ataaaatccatgcctagcttatcccacttccattc 122
||||||||||| |||| || |||||| ||||||||
Sbjct: 176961 ataaaatccatacctatctcatcccatttccattc 176995
>gb|AC007550.70| Mus musculus chromosome 11a2 clone rp21-434h10 strain 129S6/SvEvTac,
complete sequence
Length = 199956
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 316 tattaacttcctgatctcc 334
|||||||||||||||||||
Sbjct: 179758 tattaacttcctgatctcc 179776
>gb|AC069540.6| Homo sapiens chromosome 10 clone RP11-344L13, complete sequence
Length = 201182
Score = 38.2 bits (19), Expect = 7.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 409 tcctttgctcattctctctttta 431
||||||||||| |||||||||||
Sbjct: 133592 tcctttgctcactctctctttta 133614
>gb|AE005769.1| Caulobacter crescentus section 95 of 359 of the complete genome
Length = 13040
Score = 38.2 bits (19), Expect = 7.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2 tcgaggcggccgcccgggc 20
|||||||||||||||||||
Sbjct: 6769 tcgaggcggccgcccgggc 6751
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,190,774
Number of Sequences: 1217082
Number of extensions: 1190774
Number of successful extensions: 23274
Number of sequences better than 10.0: 191
length of query: 465
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 444
effective length of database: 5,475,288,455
effective search space: 2431028074020
effective search space used: 2431028074020
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)