The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_C19_T7.seq Fgr-S3_1_C19_T7 LENGTH:357bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_C19 ; CLONELIB: n/a
(357 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_002218.1| (NM_002227) janus kinase 1 [Homo sapiens] ... 31 2.2
pir||A39577 protein-tyrosine kinase (EC 2.7.1.112) JAK1 - h... 31 2.2
gb|AAH27760.1| (BC027760) Similar to RIKEN cDNA 1600021C16 ... 31 2.9
dbj|BAB24088.1| (AK005508) data source:SPTR, source key:Q9N... 31 2.9
ref|XP_062871.1| (XM_062871) similar to hypothetical protei... 30 3.8
ref|NP_055596.1| (NM_014781) Rb1-inducible coiled coil prot... 30 4.9
sp|P52332|JAK1_MOUSE Tyrosine-protein kinase JAK1 (Janus ki... 30 4.9
dbj|BAB69690.1| (AB059622) Rb1-inducible coiled coil protei... 30 4.9
gb|AAH17556.1|AAH17556 (BC017556) likely ortholog of mouse ... 30 4.9
pir||T00374 hypothetical protein KIAA0648 - human (fragment... 30 6.4
ref|XP_047529.3| (XM_047529) KIAA0648 protein [Homo sapiens] 30 6.4
gb|AAH09650.1|AAH09650 (BC009650) Unknown (protein for MGC:... 30 6.4
dbj|BAA88626.1| (AB036335) Janus kinase 1 [Sus scrofa] 30 6.4
sp|P49165|RL4_URECA 60S RIBOSOMAL PROTEIN L4 (L1) >gi|74405... 29 8.4
>ref|NP_002218.1| (NM_002227) janus kinase 1 [Homo sapiens]
sp|P23458|JAK1_HUMAN Tyrosine-protein kinase JAK1 (Janus kinase 1) (JAK-1)
gb|AAA36527.1| (M64174) protein-tyrosine kinase [Homo sapiens]
Length = 1142
Score = 31.2 bits (69), Expect = 2.2
Identities = 21/76 (27%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Frame = +3
Query: 3 VVAAEVLSECDRTLTPLCFYLKSIYPNH-----MHSIDTVKLPSLRPCQQKTQGQTL-IC 164
V E+L+ CD +P+ +LK I P H ++T+K PC + +
Sbjct: 1057 VTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLM 1116
Query: 165 FQC*ILQPETRRSGNN 212
+C QP R S N
Sbjct: 1117 RKCWEFQPSNRTSFQN 1132
>pir||A39577 protein-tyrosine kinase (EC 2.7.1.112) JAK1 - human
Length = 1154
Score = 31.2 bits (69), Expect = 2.2
Identities = 21/76 (27%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Frame = +3
Query: 3 VVAAEVLSECDRTLTPLCFYLKSIYPNH-----MHSIDTVKLPSLRPCQQKTQGQTL-IC 164
V E+L+ CD +P+ +LK I P H ++T+K PC + +
Sbjct: 1069 VTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVYQLM 1128
Query: 165 FQC*ILQPETRRSGNN 212
+C QP R S N
Sbjct: 1129 RKCWEFQPSNRTSFQN 1144
>gb|AAH27760.1| (BC027760) Similar to RIKEN cDNA 1600021C16 gene [Mus musculus]
Length = 507
Score = 30.8 bits (68), Expect = 2.9
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = +2
Query: 134 AEDTGTNINLFSMLNPST*-NPEKWEQPPDNLGVRGNVEQPPMCCMIATCPLDVNR 298
++DT +NI+L P+ NPE D + +EQ P+ T +D+NR
Sbjct: 325 SDDTVSNISLIDQKMPAIEPNPENTHSTTDLVNGHSEIEQTPLVTSDPTLKIDINR 380
>dbj|BAB24088.1| (AK005508) data source:SPTR, source key:Q9NV14,
evidence:ISS~homolog to CDNA FLJ10997 FIS, CLONE
PLACE1002438, WEAKLY SIMILAR TO ZINC FINGER PROTEIN
151~putative [Mus musculus]
Length = 532
Score = 30.8 bits (68), Expect = 2.9
Identities = 17/56 (30%), Positives = 27/56 (47%), Gaps = 1/56 (1%)
Frame = +2
Query: 134 AEDTGTNINLFSMLNPST*-NPEKWEQPPDNLGVRGNVEQPPMCCMIATCPLDVNR 298
++DT +NI+L P+ NPE D + +EQ P+ T +D+NR
Sbjct: 350 SDDTVSNISLIDQKMPAIEPNPENTHSTTDLVNGHSEIEQTPLVTSDPTLKIDINR 405
>ref|XP_062871.1| (XM_062871) similar to hypothetical protein [Homo sapiens]
Length = 6929
Score = 30.4 bits (67), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 355 ERPPGQVQGRHCVITQVPLAIHI*RTRGYHATHRRL 248
++PPG +Q + C++ PL ++ R HA RL
Sbjct: 5265 DKPPGMIQRKMCILFSKPLPSNLKLERATHADEERL 5300
>ref|NP_055596.1| (NM_014781) Rb1-inducible coiled coil protein 1 [Homo sapiens]
dbj|BAA13194.1| (D86958) similar to mouse CC1. [Homo sapiens]
Length = 1591
Score = 30.0 bits (66), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = +3
Query: 21 LSECDRTLTPLCFYLKSIYPNHMHSIDTVKL 113
L +C + L F +SIY N++ SI+ +KL
Sbjct: 157 LEDCSNSYQKLLFKFESIYSNYLQSIEDIKL 187
>sp|P52332|JAK1_MOUSE Tyrosine-protein kinase JAK1 (Janus kinase 1) (JAK-1)
gb|AAB27517.2| (S63728) JAK1 protein tyrosine kinase [Mus sp.]
Length = 1153
Score = 30.0 bits (66), Expect = 4.9
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Frame = +3
Query: 3 VVAAEVLSECDRTLTPLCFYLKSIYPNH-----MHSIDTVKLPSLRPCQQKTQGQTL-IC 164
V E+L+ CD +P+ +LK I P H + T+K PC + +
Sbjct: 1068 VTLHELLTYCDSDFSPMALFLKMIGPTHGQMTVTRLVKTLKEGKRLPCPPNCPDEVYQLM 1127
Query: 165 FQC*ILQPETRRSGNN 212
+C QP R + N
Sbjct: 1128 RKCWEFQPSNRTTFQN 1143
>dbj|BAB69690.1| (AB059622) Rb1-inducible coiled coil protein [Homo sapiens]
Length = 1594
Score = 30.0 bits (66), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = +3
Query: 21 LSECDRTLTPLCFYLKSIYPNHMHSIDTVKL 113
L +C + L F +SIY N++ SI+ +KL
Sbjct: 157 LEDCSNSYQKLLFKFESIYSNYLQSIEDIKL 187
>gb|AAH17556.1|AAH17556 (BC017556) likely ortholog of mouse coiled coil forming protein 1
[Homo sapiens]
Length = 1594
Score = 30.0 bits (66), Expect = 4.9
Identities = 12/31 (38%), Positives = 19/31 (60%)
Frame = +3
Query: 21 LSECDRTLTPLCFYLKSIYPNHMHSIDTVKL 113
L +C + L F +SIY N++ SI+ +KL
Sbjct: 157 LEDCSNSYQKLLFKFESIYSNYLQSIEDIKL 187
>pir||T00374 hypothetical protein KIAA0648 - human (fragment)
dbj|BAA31623.1| (AB014548) KIAA0648 protein [Homo sapiens]
Length = 851
Score = 29.6 bits (65), Expect = 6.4
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
Frame = +2
Query: 140 DTGTNINLFSMLNPST*NPEKWEQPPD--NLGVRGNVEQP 253
+TG+NIN+ S LNPST N + EQ + GV N E P
Sbjct: 677 ETGSNINVNSELNPSTGNRSR-EQSSEAAETGVSENEENP 715
>ref|XP_047529.3| (XM_047529) KIAA0648 protein [Homo sapiens]
Length = 687
Score = 29.6 bits (65), Expect = 6.4
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
Frame = +2
Query: 140 DTGTNINLFSMLNPST*NPEKWEQPPD--NLGVRGNVEQP 253
+TG+NIN+ S LNPST N + EQ + GV N E P
Sbjct: 629 ETGSNINVNSELNPSTGNRSR-EQSSEAAETGVSENEENP 667
>gb|AAH09650.1|AAH09650 (BC009650) Unknown (protein for MGC:5605) [Homo sapiens]
Length = 333
Score = 29.6 bits (65), Expect = 6.4
Identities = 19/40 (47%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
Frame = +2
Query: 140 DTGTNINLFSMLNPST*NPEKWEQPPD--NLGVRGNVEQP 253
+TG+NIN+ S LNPST N + EQ + GV N E P
Sbjct: 159 ETGSNINVNSELNPSTGNRSR-EQSSEAAETGVSENEENP 197
>dbj|BAA88626.1| (AB036335) Janus kinase 1 [Sus scrofa]
Length = 1141
Score = 29.6 bits (65), Expect = 6.4
Identities = 20/76 (26%), Positives = 32/76 (41%), Gaps = 6/76 (7%)
Frame = +3
Query: 3 VVAAEVLSECDRTLTPLCFYLKSIYPNH-----MHSIDTVKLPSLRPCQQKTQGQTL-IC 164
V E+L+ CD +P+ +LK I P H ++T+K PC + +
Sbjct: 1056 VTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPEEVYQLM 1115
Query: 165 FQC*ILQPETRRSGNN 212
+C QP R + N
Sbjct: 1116 RKCWEFQPSNRTTFQN 1131
>sp|P49165|RL4_URECA 60S RIBOSOMAL PROTEIN L4 (L1)
pir||T12048 ribosomal protein L4 - spoonworm (Urechis caupo)
gb|AAA74021.1| (U30495) ribosomal protein [Urechis caupo]
Length = 386
Score = 29.3 bits (64), Expect = 8.4
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -1
Query: 309 RCPWRFTSK-GHVAIMQHIGGCSTFPRTPRLSGGCSHFSGFQVEGFSIENRLMFVPVSS 136
R P+ + K GH + G R PR+ GG +H SG G R MF P +
Sbjct: 48 RQPYAVSQKAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGRRMFAPTKT 106
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 203,836,700
Number of Sequences: 922381
Number of extensions: 4014985
Number of successful extensions: 9371
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 9221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9371
length of database: 289,601,141
effective HSP length: 94
effective length of database: 202,897,327
effective search space used: 4869535848
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)