The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_C20_T7.seq Fgr-S3_1_C20_T7 LENGTH:551bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_C20 ; CLONELIB: n/a
(551 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|M35330.1|WHTREPTB T.monococcum aegilopoides repetitive D... 70 3e-09
gb|BC028428.1| Mus musculus clone MGC:41012 IMAGE:1315017 46 0.039
emb|AL627187.13| Mouse DNA sequence from clone RP23-319B15 ... 46 0.039
gb|AF028258.1|AF028258 Hordeum chilense RAPD marker IAS-pHc5-1 46 0.039
emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 46 0.039
dbj|AK003636.1|AK003636 Mus musculus 18 days embryo whole b... 46 0.039
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 44 0.15
gb|AC006008.2|AC006008 Homo sapiens PAC clone RP5-820A21 fr... 42 0.61
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 42 0.61
emb|AL353149.10|AL353149 Human DNA sequence from clone RP11... 42 0.61
gb|AC005998.3|AC005998 Homo sapiens PAC clone RP4-622E21 fr... 42 0.61
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 42 0.61
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 42 0.61
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 42 0.61
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 42 0.61
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 42 0.61
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 42 0.61
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 42 0.61
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 42 0.61
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 42 0.61
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 42 0.61
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 42 0.61
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 42 0.61
gb|AC008088.8|AC008088 Homo sapiens chromosome 17, clone RP... 40 2.4
gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HR... 40 2.4
gb|AC000121.1|HSAC000121 Human BAC clone RG249A12 from 7q22... 40 2.4
dbj|AP002340.3|AP002340 Homo sapiens genomic DNA, chromosom... 40 2.4
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 2.4
gb|AF483544.1| Oncorhynchus mykiss clone B21 VHSV-induced m... 38 9.5
gb|AC108491.4| Homo sapiens BAC clone RP11-138I17 from 4, c... 38 9.5
gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D... 38 9.5
gb|AC090063.4| Homo sapiens chromosome 5 clone CTB-22D11, c... 38 9.5
gb|AC067796.11| Homo sapiens chromosome 18, clone RP11-609K... 38 9.5
ref|NM_070821.1| dehydrogenase 38 9.5
ref|NM_018113.1| Homo sapiens lipocalin-interacting membran... 38 9.5
gb|AF022978.1|AF022978 Caenorhabditis elegans cosmid T01G6,... 38 9.5
gb|AF351620.1|AF351620 Homo sapiens chromosome 12 38 9.5
gb|AC005043.2|AC005043 Homo sapiens BAC clone RP11-576N21 f... 38 9.5
gb|AC011477.5|AC011477 Homo sapiens chromosome 19 clone CTC... 38 9.5
emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on ... 38 9.5
gb|AC005399.19|AC005399 Homo sapiens chromosome 22q11 clone... 38 9.5
gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLN... 38 9.5
emb|AL078602.14|HSJ360M22 Human DNA sequence from clone RP3... 38 9.5
emb|AL603765.6|AL603765 Human DNA sequence from clone RP11-... 38 9.5
gb|AC002293.1|AC002293 Genomic sequence from Human 9q34, co... 38 9.5
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 9.5
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 9.5
emb|AL359956.10|AL359956 Human DNA sequence from clone RP11... 38 9.5
emb|AL390199.10|AL390199 Human DNA sequence from clone RP11... 38 9.5
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 9.5
emb|AL133350.16|AL133350 Human DNA sequence from clone RP11... 38 9.5
gb|AC002102.1|AC002102 Homo sapiens chromosome 9q34, clone ... 38 9.5
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 9.5
emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome ... 38 9.5
emb|AL035417.15|HS891H21 Human DNA sequence from clone 891H... 38 9.5
emb|X61695.1|DHMINOS D.hydei minos transposon-like element ... 38 9.5
dbj|AK001356.1|AK001356 Homo sapiens cDNA FLJ10494 fis, clo... 38 9.5
emb|Z29102.1|DMMINOS3 D.hydei (Minos-3) gene for transposas... 38 9.5
emb|Z29098.1|DMMINOS2 D.hydei (Minos-2) gene for transposas... 38 9.5
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 9.5
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 9.5
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 9.5
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 9.5
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 9.5
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 9.5
>gb|M35330.1|WHTREPTB T.monococcum aegilopoides repetitive DNA sequence, clone pTbUCD2
Length = 273
Score = 69.9 bits (35), Expect = 3e-09
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Minus
Query: 444 ccacacataccaatgcatttcaaacatacacacaagatgcacgantatgtgtagatacaa 503
|||| |||||||| ||||||||| ||||||||||| |||| ||| |||| ||| ||||||
Sbjct: 273 ccactcataccaa-gcatttcaatcatacacacaatatgcccga-tatgagtacatacaa 216
Query: 504 catggcatcacaaca 518
|||||||||||||||
Sbjct: 215 catggcatcacaaca 201
>gb|BC028428.1| Mus musculus clone MGC:41012 IMAGE:1315017
Length = 1153
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 201 ataacccaacaataaacgtgccagtca 227
|||||||||||||||||||||| ||||
Sbjct: 1094 ataacccaacaataaacgtgcctgtca 1120
>emb|AL627187.13| Mouse DNA sequence from clone RP23-319B15 on chromosome 11, complete
sequence [Mus musculus]
Length = 201654
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 201 ataacccaacaataaacgtgccagtca 227
|||||||||||||||||||||| ||||
Sbjct: 157271 ataacccaacaataaacgtgcctgtca 157297
>gb|AF028258.1|AF028258 Hordeum chilense RAPD marker IAS-pHc5-1
Length = 701
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 244 agtcgtagcaagctacaaggact 266
|||||||||||||||||||||||
Sbjct: 421 agtcgtagcaagctacaaggact 399
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
Length = 59748
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 244 agtcgtagcaagctacaaggact 266
|||||||||||||||||||||||
Sbjct: 58793 agtcgtagcaagctacaaggact 58771
Score = 46.1 bits (23), Expect = 0.039
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 244 agtcgtagcaagctacaaggact 266
|||||||||||||||||||||||
Sbjct: 48570 agtcgtagcaagctacaaggact 48548
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 tgtaacacatcatatcactttgcggcctcacgcacggt 49
||||||||||| ||| |||||||| ||||||||||||
Sbjct: 59027 tgtaacacatcgcatctctttgcggtctcacgcacggt 58990
Score = 44.1 bits (22), Expect = 0.15
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 12 tgtaacacatcatatcactttgcggcctcacgcacggt 49
||||||||||| ||| |||||||| ||||||||||||
Sbjct: 48805 tgtaacacatcgcatctctttgcggtctcacgcacggt 48768
>dbj|AK003636.1|AK003636 Mus musculus 18 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:1110012J11:hypothetical protein,
full insert sequence
Length = 1112
Score = 46.1 bits (23), Expect = 0.039
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 201 ataacccaacaataaacgtgccagtca 227
|||||||||||||||||||||| ||||
Sbjct: 1084 ataacccaacaataaacgtgcctgtca 1110
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 44.1 bits (22), Expect = 0.15
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 519 tgtacctcggccgcgaccacgc 540
||||||||||||||||||||||
Sbjct: 508 tgtacctcggccgcgaccacgc 529
>gb|AC006008.2|AC006008 Homo sapiens PAC clone RP5-820A21 from 7, complete sequence
Length = 57554
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 327 tgccatccaacttaagtgttc 347
|||||||||||||||||||||
Sbjct: 35904 tgccatccaacttaagtgttc 35884
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 844 gtacctcggccgcgaccacgc 864
>emb|AL353149.10|AL353149 Human DNA sequence from clone RP11-129G17 on chromosome 10, complete
sequence [Homo sapiens]
Length = 64459
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 actaggagacatttccccata 404
|||||||||||||||||||||
Sbjct: 38520 actaggagacatttccccata 38540
>gb|AC005998.3|AC005998 Homo sapiens PAC clone RP4-622E21 from 7q34-q36, complete sequence
Length = 96556
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 327 tgccatccaacttaagtgttc 347
|||||||||||||||||||||
Sbjct: 41679 tgccatccaacttaagtgttc 41699
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 527 gtacctcggccgcgaccacgc 547
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 77 gtacctcggccgcgaccacgc 57
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 40 gtacctcggccgcgaccacgc 20
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 52 gtacctcggccgcgaccacgc 32
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 401 gtacctcggccgcgaccacgc 421
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 682 gtacctcggccgcgaccacgc 702
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 427 gtacctcggccgcgaccacgc 447
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 282 gtacctcggccgcgaccacgc 302
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 23 gtacctcggccgcgaccacgc 3
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 405 gtacctcggccgcgaccacgc 425
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgc 2
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 42.1 bits (21), Expect = 0.61
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 520 gtacctcggccgcgaccacgc 540
|||||||||||||||||||||
Sbjct: 312 gtacctcggccgcgaccacgc 332
>gb|AC008088.8|AC008088 Homo sapiens chromosome 17, clone RP11-121A13, complete sequence
Length = 118392
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 212 ataaacgtgccagtcagcaacgta 235
|||||||||| |||||||||||||
Sbjct: 115215 ataaacgtgctagtcagcaacgta 115238
>gb|AC004702.1|AC004702 Homo sapiens chromosome 17, clone HRPC836L9, complete sequence
Length = 120821
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 212 ataaacgtgccagtcagcaacgta 235
|||||||||| |||||||||||||
Sbjct: 18989 ataaacgtgctagtcagcaacgta 19012
>gb|AC000121.1|HSAC000121 Human BAC clone RG249A12 from 7q22, complete sequence [Homo sapiens]
Length = 93163
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 303 tacacaagaacaaagaaggataca 326
|||||||| |||||||||||||||
Sbjct: 25513 tacacaagtacaaagaaggataca 25536
>dbj|AP002340.3|AP002340 Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, complete
sequence
Length = 165747
Score = 40.1 bits (20), Expect = 2.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 462 ttcaaacatacacacaagatgcac 485
||||||||||||||||| ||||||
Sbjct: 71402 ttcaaacatacacacaatatgcac 71425
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 2.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 521 tacctcggccgcgaccacgc 540
||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgc 2
>gb|AF483544.1| Oncorhynchus mykiss clone B21 VHSV-induced mRNA, partial sequence
Length = 633
Score = 38.2 bits (19), Expect = 9.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 518 atgtacctcggccgcgaccacgc 540
|||||||||||||| ||||||||
Sbjct: 610 atgtacctcggccgggaccacgc 632
>gb|AC108491.4| Homo sapiens BAC clone RP11-138I17 from 4, complete sequence
Length = 133452
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14 taacacatcatatcacttt 32
|||||||||||||||||||
Sbjct: 98198 taacacatcatatcacttt 98216
>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence
Length = 184396
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tttccccataaggaaggct 413
|||||||||||||||||||
Sbjct: 52356 tttccccataaggaaggct 52374
>gb|AC090063.4| Homo sapiens chromosome 5 clone CTB-22D11, complete sequence
Length = 173391
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 459 catttcaaacatacacaca 477
|||||||||||||||||||
Sbjct: 81852 catttcaaacatacacaca 81870
>gb|AC067796.11| Homo sapiens chromosome 18, clone RP11-609K12, complete sequence
Length = 201861
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 395 tttccccataaggaaggct 413
|||||||||||||||||||
Sbjct: 196373 tttccccataaggaaggct 196391
>ref|NM_070821.1| dehydrogenase
Length = 840
Score = 38.2 bits (19), Expect = 9.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 409 aggctaccaagaataaactacta 431
||||||||||||| |||||||||
Sbjct: 131 aggctaccaagaaaaaactacta 153
>ref|NM_018113.1| Homo sapiens lipocalin-interacting membrane receptor (LIMR), mRNA
Length = 2328
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 374 ctgtggaagcactaggaga 392
|||||||||||||||||||
Sbjct: 448 ctgtggaagcactaggaga 430
>gb|AF022978.1|AF022978 Caenorhabditis elegans cosmid T01G6, complete sequence
Length = 27128
Score = 38.2 bits (19), Expect = 9.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 409 aggctaccaagaataaactacta 431
||||||||||||| |||||||||
Sbjct: 21230 aggctaccaagaaaaaactacta 21252
>gb|AF351620.1|AF351620 Homo sapiens chromosome 12
Length = 14699
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 374 ctgtggaagcactaggaga 392
|||||||||||||||||||
Sbjct: 4502 ctgtggaagcactaggaga 4484
>gb|AC005043.2|AC005043 Homo sapiens BAC clone RP11-576N21 from 1, complete sequence
Length = 163417
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 152 tgaatagttctaaacccaa 170
|||||||||||||||||||
Sbjct: 97443 tgaatagttctaaacccaa 97461
>gb|AC011477.5|AC011477 Homo sapiens chromosome 19 clone CTC-559E9, complete sequence
Length = 178710
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 279 gcgtgacatttccctgaag 297
|||||||||||||||||||
Sbjct: 131312 gcgtgacatttccctgaag 131294
>emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on chromosome 4, complete
sequence [Mus musculus]
Length = 206407
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 149 acatgaatagttctaaacc 167
|||||||||||||||||||
Sbjct: 27396 acatgaatagttctaaacc 27414
>gb|AC005399.19|AC005399 Homo sapiens chromosome 22q11 clone p238m15, complete sequence
Length = 151834
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 294 gaagggacgtacacaagaa 312
|||||||||||||||||||
Sbjct: 58961 gaagggacgtacacaagaa 58979
>gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLNLR-269E4, complete sequence
Length = 39156
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 279 gcgtgacatttccctgaag 297
|||||||||||||||||||
Sbjct: 25214 gcgtgacatttccctgaag 25232
>emb|AL078602.14|HSJ360M22 Human DNA sequence from clone RP3-360M22 on chromosome 6q26-27,
complete sequence [Homo sapiens]
Length = 152129
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 362 actaccatggctctgtgga 380
|||||||||||||||||||
Sbjct: 105 actaccatggctctgtgga 123
>emb|AL603765.6|AL603765 Human DNA sequence from clone RP11-351G1 on chromosome 1, complete
sequence [Homo sapiens]
Length = 157497
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 178 caaactcacaaggacagcc 196
|||||||||||||||||||
Sbjct: 107578 caaactcacaaggacagcc 107560
>gb|AC002293.1|AC002293 Genomic sequence from Human 9q34, complete sequence [Homo sapiens]
Length = 19000
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 467 acatacacacaagatgcac 485
|||||||||||||||||||
Sbjct: 12562 acatacacacaagatgcac 12580
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 135 acctcggccgcgaccacgc 153
>emb|AL359956.10|AL359956 Human DNA sequence from clone RP11-438H17 on chromosome X, complete
sequence [Homo sapiens]
Length = 62570
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 367 catggctctgtggaagcac 385
|||||||||||||||||||
Sbjct: 11722 catggctctgtggaagcac 11704
>emb|AL390199.10|AL390199 Human DNA sequence from clone RP11-552F24 on chromosome Xq25-26.1,
complete sequence [Homo sapiens]
Length = 69951
Score = 38.2 bits (19), Expect = 9.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 288 ttccctgaagggacgtacacaag 310
||||||||||||| |||||||||
Sbjct: 22159 ttccctgaagggaagtacacaag 22137
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 39 acctcggccgcgaccacgc 21
>emb|AL133350.16|AL133350 Human DNA sequence from clone RP11-155N8 on chromosome 10 Contains GSSs
and STSs, complete sequence [Homo sapiens]
Length = 89833
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 450 ataccaatgcatttcaaac 468
|||||||||||||||||||
Sbjct: 10761 ataccaatgcatttcaaac 10779
>gb|AC002102.1|AC002102 Homo sapiens chromosome 9q34, clone 280C11, complete sequence
Length = 44078
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 467 acatacacacaagatgcac 485
|||||||||||||||||||
Sbjct: 35386 acatacacacaagatgcac 35404
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>emb|AL049862.1|ATF18B3 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3
Length = 89469
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 450 ataccaatgcatttcaaac 468
|||||||||||||||||||
Sbjct: 23648 ataccaatgcatttcaaac 23630
>emb|AL035417.15|HS891H21 Human DNA sequence from clone 891H21 on chromosome 1p32.2-34.2 Contains
a novel gene, ESTs, STSs, GSSs and a CpG island, complete
sequence [Homo sapiens]
Length = 122948
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 152 tgaatagttctaaacccaa 170
|||||||||||||||||||
Sbjct: 76704 tgaatagttctaaacccaa 76722
>emb|X61695.1|DHMINOS D.hydei minos transposon-like element encoding transposase
Length = 1801
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 446 acacataccaatgcatttc 464
|||||||||||||||||||
Sbjct: 1698 acacataccaatgcatttc 1680
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 446 acacataccaatgcatttc 464
|||||||||||||||||||
Sbjct: 104 acacataccaatgcatttc 122
>dbj|AK001356.1|AK001356 Homo sapiens cDNA FLJ10494 fis, clone NT2RP2000283
Length = 2328
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 374 ctgtggaagcactaggaga 392
|||||||||||||||||||
Sbjct: 448 ctgtggaagcactaggaga 430
>emb|Z29102.1|DMMINOS3 D.hydei (Minos-3) gene for transposase (putative)
Length = 1801
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 446 acacataccaatgcatttc 464
|||||||||||||||||||
Sbjct: 1698 acacataccaatgcatttc 1680
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 446 acacataccaatgcatttc 464
|||||||||||||||||||
Sbjct: 104 acacataccaatgcatttc 122
>emb|Z29098.1|DMMINOS2 D.hydei (Minos-2) gene for transposase (putative)
Length = 1801
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 446 acacataccaatgcatttc 464
|||||||||||||||||||
Sbjct: 1698 acacataccaatgcatttc 1680
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 446 acacataccaatgcatttc 464
|||||||||||||||||||
Sbjct: 104 acacataccaatgcatttc 122
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 37 acctcggccgcgaccacgc 55
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 9.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 522 acctcggccgcgaccacgc 540
|||||||||||||||||||
Sbjct: 84 acctcggccgcgaccacgc 102
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,205,794
Number of Sequences: 1217082
Number of extensions: 1205794
Number of successful extensions: 20547
Number of sequences better than 10.0: 65
length of query: 551
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 530
effective length of database: 5,475,288,455
effective search space: 2901902881150
effective search space used: 2901902881150
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)