The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_D02_T7.seq Fgr-S3_1_D02_T7 LENGTH:413bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_D02 ; CLONELIB: n/a
(413 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL73063.1|AC090873_9 (AC090873) Hypothetical protein [O... 44 4e-04
gb|AAL70115.1|AC099733_6 (AC099733) Unknown protein [Oryza ... 42 9e-04
gb|AAL76183.1|AC074283_6 (AC074283) Hypothetical protein [O... 42 0.001
gb|AAK63877.1|AC074105_6 (AC074105) Hypothetical protein [O... 41 0.003
gb|AAL74275.1|AC091238_16 (AC091238) Hypothetical protein [... 40 0.003
gb|AAL25176.1|AC079852_9 (AC079852) Unknown protein [Oryza ... 40 0.004
gb|AAK63876.1|AC074105_5 (AC074105) Hypothetical protein [O... 39 0.007
gb|AAL70110.1|AC099733_1 (AC099733) Unknown protein [Oryza ... 38 0.017
gb|AAK63885.1|AC074105_14 (AC074105) Hypothetical protein [... 38 0.022
gb|AAL75735.1|AC091724_8 (AC091724) Unknown protein [Oryza ... 36 0.063
gb|AAK02026.2|AC074283_7 (AC074283) Unknown protein [Oryza ... 34 0.24
dbj|BAB70842.1| (AK055041) unnamed protein product [Homo sa... 34 0.31
dbj|BAB89094.1| (AP003372) hypothetical protein [Oryza sati... 34 0.31
dbj|BAB68207.1| (AB057641) avEna neural variant [Gallus gal... 34 0.31
ref|NP_034903.1| (NM_010773) methyl-CpG binding domain prot... 33 0.41
gb|AAC68874.1| (AF072245) testis specific methyl-CpG bindin... 33 0.41
gb|AAL25173.1|AC079852_6 (AC079852) Unknown protein [Oryza ... 33 0.53
gb|AAK95682.1|AC087723_15 (AC087723) Unknown protein [Oryza... 32 0.91
gb|AAK63881.1|AC074105_10 (AC074105) Hypothetical protein [... 32 0.91
gb|AAF47280.1| (AE003465) Dll gene product [alt 1] [Drosoph... 32 0.91
ref|NP_056647.1| (NM_015832) methyl-CpG binding domain prot... 32 0.91
ref|NP_523857.1| (NM_079133) Distal-less; Brista; Enhancer ... 32 0.91
sp|P20009|HMDL_DROME HOMEOTIC DISTAL-LESS PROTEIN (PROTEIN ... 32 0.91
ref|NP_188919.1| (NM_113179) hypothetical protein [Arabidop... 32 0.91
dbj|BAB07984.1| (AP002525) hypothetical protein~similar to ... 32 0.91
ref|NP_003918.1| (NM_003927) methyl-CpG binding domain prot... 32 0.91
gb|AAK63874.1|AC074105_3 (AC074105) Hypothetical protein [O... 32 1.2
sp|O33369|YOR2_NEIGO HYPOTHETICAL PROTEIN (ORF2) >gi|257005... 32 1.5
dbj|BAB84475.1| (AP003853) similar to Oryza sativa chromoso... 31 2.0
ref|XP_108011.1| (XM_108011) hypothetical protein XP_108011... 31 2.6
ref|NP_004089.1| (NM_004098) empty spiracles homolog 2 (Dro... 31 2.6
ref|XP_066267.1| (XM_066267) similar to contains similarity... 31 2.6
dbj|BAB68032.1| (AP003435) hypothetical protein [Oryza sati... 31 2.6
emb|CAC59796.1| (AL390114) probable hypothetical 29.1 Kd pr... 30 3.4
ref|NP_335015.1| (NC_002755) doxorubicin biosynthesis enzym... 30 3.4
ref|NP_215091.1| (NC_000962) hypothetical protein Rv0577 [M... 30 3.4
ref|NP_032048.1| (NM_008022) forkhead box D4; forkhead homo... 30 3.4
ref|NP_376066.1| (NC_003106) 304aa long hypothetical glutam... 30 4.5
gb|AAM22077.1| (AF483216) minor histocompatibility antigen ... 30 4.5
ref|NP_034506.1| (NM_010376) histocompatibility 13 [Mus mus... 30 5.9
gb|AAM22075.1|AF483214_1 (AF483214) minor histocompatibilit... 30 5.9
dbj|BAB90340.1| (AP003535) hypothetical protein~similar to ... 30 5.9
ref|XP_098679.1| (XM_098679) hypothetical protein XP_098679... 30 5.9
dbj|BAB28346.1| (AK012600) data source:MGD, source key:MGI:... 30 5.9
gb|AAK58050.1| (AF378547) H+ transporting ATP synthase inhi... 29 7.7
ref|XP_104709.1| (XM_104709) hypothetical protein XP_104709... 29 7.7
dbj|BAB63775.1| (AP003607) hypothetical protein [Oryza sati... 29 7.7
ref|XP_072236.2| (XM_072236) gastrulation brain homeo box 2... 29 7.7
>gb|AAL73063.1|AC090873_9 (AC090873) Hypothetical protein [Oryza sativa]
Length = 415
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/59 (38%), Positives = 30/59 (49%)
Frame = -1
Query: 221 LPTTLVRTTLVCKRWLCHASDPAILRRFCKLHRPCNLGFYVDIGLIQNHYLFVPMLSHP 45
LP++L R ++VC RW SDP LRRF HR L + G + F+P L P
Sbjct: 151 LPSSLPRASVVCSRWRLIVSDPGFLRRFQSRHRKHPLLGFFKAGFRRVDPTFIPTLDPP 209
>gb|AAL70115.1|AC099733_6 (AC099733) Unknown protein [Oryza sativa]
Length = 728
Score = 42.4 bits (98), Expect = 9e-04
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLH-RPCNLGFYVD 96
P++L R +LVCK+W SDPA LRR+ H P LGF+ D
Sbjct: 36 PSSLPRASLVCKQWRRVVSDPAFLRRYRAHHGEPLLLGFFAD 77
>gb|AAL76183.1|AC074283_6 (AC074283) Hypothetical protein [Oryza sativa]
Length = 761
Score = 41.6 bits (96), Expect = 0.001
Identities = 22/42 (52%), Positives = 27/42 (63%), Gaps = 1/42 (2%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHR-PCNLGFYVD 96
P++L R +LVCK+W SDPA LRRF HR P LG + D
Sbjct: 42 PSSLPRASLVCKQWRRLVSDPAFLRRFRARHRDPPLLGVFKD 83
>gb|AAK63877.1|AC074105_6 (AC074105) Hypothetical protein [Oryza sativa]
Length = 398
Score = 40.8 bits (94), Expect = 0.003
Identities = 23/49 (46%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Frame = -1
Query: 242 EIIACLGL-PTTLVRTTLVCKRWLCHASDPAILRRFCKLHR-PCNLGFY 102
EI+ CL P+ + +LVCKRWL P+ LRR C HR P LGF+
Sbjct: 22 EILLCLPPHPSFVSGASLVCKRWLHLIRSPSFLRRVCAFHRTPPVLGFF 70
>gb|AAL74275.1|AC091238_16 (AC091238) Hypothetical protein [Oryza sativa]
Length = 324
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Frame = -1
Query: 266 TLNLSSQFEIIACLGLPTT--LVRTTLVCKRWLCHASDPAILRRFCKLHR--PCNLGFYV 99
T L + + L LP+ L R VC+RW AS P LR F +LHR P LGF+V
Sbjct: 4 TAELDDRLLAVILLRLPSAAALARAATVCRRWRRVASSPTFLRLFRRLHRHAPPLLGFFV 63
>gb|AAL25176.1|AC079852_9 (AC079852) Unknown protein [Oryza sativa]
Length = 394
Score = 40.0 bits (92), Expect = 0.004
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -1
Query: 221 LPTTLVRTTLVCKRWLCHASDPAILRRFCKLH-RPCNLGFYVD 96
LPT L+R VC+RW A++P LRR+ H P LGF+V+
Sbjct: 25 LPTQLIRAGAVCRRWRRIAAEPGFLRRYRAHHGEPPLLGFFVN 67
>gb|AAK63876.1|AC074105_5 (AC074105) Hypothetical protein [Oryza sativa]
Length = 400
Score = 39.3 bits (90), Expect = 0.007
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHRPCN-LGFYVD 96
P+ L +LV KRWL H +P+ LRRF + HR LGF+++
Sbjct: 35 PSFLSSASLVSKRWLRHTRNPSFLRRFREFHRTAPVLGFFLN 76
>gb|AAL70110.1|AC099733_1 (AC099733) Unknown protein [Oryza sativa]
gb|AAK02028.2|AC074283_9 (AC074283) Unknown protein [Oryza sativa]
Length = 386
Score = 38.1 bits (87), Expect = 0.017
Identities = 20/43 (46%), Positives = 26/43 (59%), Gaps = 2/43 (4%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHR--PCNLGFYVD 96
P++L R +LVCKRW +DPA RRF HR P +G + D
Sbjct: 36 PSSLPRASLVCKRWRRLVTDPAFHRRFRARHRNPPPLIGVFED 78
>gb|AAK63885.1|AC074105_14 (AC074105) Hypothetical protein [Oryza sativa]
Length = 388
Score = 37.7 bits (86), Expect = 0.022
Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHR-PCNLGFY 102
P+ L R +LVC RW A DP LRR HR P LGF+
Sbjct: 33 PSFLSRASLVCNRWRRLARDPGFLRRLRAFHRTPPVLGFF 72
>gb|AAL75735.1|AC091724_8 (AC091724) Unknown protein [Oryza sativa]
Length = 379
Score = 36.2 bits (82), Expect = 0.063
Identities = 17/38 (44%), Positives = 21/38 (54%)
Frame = -1
Query: 215 TTLVRTTLVCKRWLCHASDPAILRRFCKLHRPCNLGFY 102
+TL + VCKRW A +P RRF H P LGF+
Sbjct: 46 STLPTASAVCKRWRRLAFEPGFRRRFVARHEPPFLGFF 83
>gb|AAK02026.2|AC074283_7 (AC074283) Unknown protein [Oryza sativa]
Length = 130
Score = 34.3 bits (77), Expect = 0.24
Identities = 16/31 (51%), Positives = 19/31 (60%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLH 126
P++L R +LVCKRW SD LRRF H
Sbjct: 33 PSSLPRASLVCKRWRRLVSDHGFLRRFRARH 63
>dbj|BAB70842.1| (AK055041) unnamed protein product [Homo sapiens]
Length = 252
Score = 33.9 bits (76), Expect = 0.31
Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 13/85 (15%)
Frame = -3
Query: 228 PRLTYHPRPHNPCL*TLALPCLRPRHPPQVLQA--PSTLQPWILRRHW----------VN 85
P + HP P L LP P HP Q PST PW++ R+ +
Sbjct: 81 PAVPVHPVPPPHALAAHPLPSSHPPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDTS 140
Query: 84 PEPLSL-RANAFAPPRVRHCYPPAR 13
PE L A A P R+R + P++
Sbjct: 141 PESFLLHNALARKPKRIRTAFSPSQ 165
>dbj|BAB89094.1| (AP003372) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 525
Score = 33.9 bits (76), Expect = 0.31
Identities = 21/59 (35%), Positives = 28/59 (46%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHRPCNLGFYVDIGLIQNHYLFVPMLSHPL 42
P L R + VCKRW SD A L R + P LGF ++ + FVP + P+
Sbjct: 111 PACLARASAVCKRWRRLLSDRAFLLRRRRRAPPPLLGFLHNLDNADHPDRFVPTTALPI 169
>dbj|BAB68207.1| (AB057641) avEna neural variant [Gallus gallus]
Length = 784
Score = 33.9 bits (76), Expect = 0.31
Identities = 25/74 (33%), Positives = 35/74 (46%), Gaps = 5/74 (6%)
Frame = -3
Query: 216 YHP-RPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILRRHWVNPEPLSLRANAFAP-- 46
+HP PH T+ P + PP + AP+TL P NP+P++ A +FAP
Sbjct: 331 FHPVLPHYA---TVPRPLNKSSRPPSPVNAPATLPP--------NPKPVAWSAPSFAPLP 379
Query: 45 --PRVRHCYPPARA 10
P V PP +A
Sbjct: 380 PSPPVMISSPPGKA 393
>ref|NP_034903.1| (NM_010773) methyl-CpG binding domain protein 2 [Mus musculus]
gb|AAC68872.1| (AF072243) methyl-CpG binding protein MBD2 [Mus musculus]
gb|AAD50372.1| (AF120987) methyl-CpG binding protein 2 [Mus musculus]
Length = 414
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +2
Query: 44 GGAKALARRDNGSGLTQCRRRIQGCRVDGACRTCGGWRGRRHGKASVYRQGLCGRGW*VS 223
GG A+ + GS L + G R +GA GG RGR K + G+CGRG
Sbjct: 27 GGDSAIEQGGQGSALAPSP--VSGVRREGAR---GGGRGRGRWKQAARGGGVCGRGRGRG 81
Query: 224 RGR 232
RGR
Sbjct: 82 RGR 84
>gb|AAC68874.1| (AF072245) testis specific methyl-CpG binding protein MBD2 [Mus
musculus]
gb|AAD50373.1| (AF120987) testis-specific methyl-CpG binding protein 2 [Mus
musculus]
Length = 249
Score = 33.5 bits (75), Expect = 0.41
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +2
Query: 44 GGAKALARRDNGSGLTQCRRRIQGCRVDGACRTCGGWRGRRHGKASVYRQGLCGRGW*VS 223
GG A+ + GS L + G R +GA GG RGR K + G+CGRG
Sbjct: 27 GGDSAIEQGGQGSALAPSP--VSGVRREGAR---GGGRGRGRWKQAARGGGVCGRGRGRG 81
Query: 224 RGR 232
RGR
Sbjct: 82 RGR 84
>gb|AAL25173.1|AC079852_6 (AC079852) Unknown protein [Oryza sativa]
gb|AAM08429.1|AC112513_15 (AC112513) Unknown protein [Oryza sativa]
Length = 388
Score = 33.1 bits (74), Expect = 0.53
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHR-PCNLGFYVDIGLIQNHYLFVPMLSHPL 42
PT L+R +LVCK W D ++RF H+ P LG + + I F+P + +P
Sbjct: 21 PTCLLRASLVCKHWRYLIRDNKFIKRFRAFHQTPPVLGIFTNSTSIPR---FLP-IGNPP 76
Query: 41 ELDTV 27
E TV
Sbjct: 77 ECVTV 81
>gb|AAK95682.1|AC087723_15 (AC087723) Unknown protein [Oryza sativa]
Length = 459
Score = 32.3 bits (72), Expect = 0.91
Identities = 17/43 (39%), Positives = 22/43 (50%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHRPCNLGFYVDIG 90
P L R VC+ W +DPA LRR+ + H +L YV G
Sbjct: 109 PKLLYRFAAVCRTWRSLLTDPAFLRRYREFHGLPHLIGYVHDG 151
>gb|AAK63881.1|AC074105_10 (AC074105) Hypothetical protein [Oryza sativa]
Length = 368
Score = 32.3 bits (72), Expect = 0.91
Identities = 19/40 (47%), Positives = 20/40 (49%), Gaps = 1/40 (2%)
Frame = -1
Query: 218 PTTLVRTTLVCKRWLCHASDPAILRRFCKLHR-PCNLGFY 102
P L R LVC+RW PA L R HR P LGFY
Sbjct: 38 PDCLHRAALVCRRWGRLIHGPAFLPRLRAFHRTPPVLGFY 77
>gb|AAF47280.1| (AE003465) Dll gene product [alt 1] [Drosophila melanogaster]
Length = 322
Score = 32.3 bits (72), Expect = 0.91
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 216 YHPRPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILRRHWVNPEP 76
Y P H+P + + L P PP L +P T PW + HW++ +P
Sbjct: 230 YLPPGHSPTPSSTPVSELSPEFPPTGL-SPPTQAPWDQKPHWIDHKP 275
>ref|NP_056647.1| (NM_015832) methyl-CpG binding domain protein 2, testis-specific
isoform [Homo sapiens]
gb|AAD56596.1| (AF120994) testis-specific methyl-CpG binding protein 2 [Homo
sapiens]
Length = 302
Score = 32.3 bits (72), Expect = 0.91
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +2
Query: 44 GGAKALARRDNGSGLTQCRRRIQGCRVDGACRTCGGWRGRRHGKASVYRQGLCGRGW*VS 223
GG A+ + GS L + G R +GA GG RGR K + G+CGRG
Sbjct: 27 GGDSAIEQGGQGSALAPSP--VSGVRREGAR---GGGRGRGRWKQAGRGGGVCGRGRGRG 81
Query: 224 RGR 232
RGR
Sbjct: 82 RGR 84
>ref|NP_523857.1| (NM_079133) Distal-less; Brista; Enhancer of Arp; Distalless
[Drosophila melanogaster]
gb|AAF47279.1| (AE003465) Dll gene product [alt 2] [Drosophila melanogaster]
Length = 327
Score = 32.3 bits (72), Expect = 0.91
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 216 YHPRPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILRRHWVNPEP 76
Y P H+P + + L P PP L +P T PW + HW++ +P
Sbjct: 230 YLPPGHSPTPSSTPVSELSPEFPPTGL-SPPTQAPWDQKPHWIDHKP 275
>sp|P20009|HMDL_DROME HOMEOTIC DISTAL-LESS PROTEIN (PROTEIN BRISTA)
pir||A44168 homeotic protein Distal-less - fruit fly (Drosophila melanogaster)
gb|AAB24059.1| (S47947) distal-less [Drosophila melanogaster]
Length = 327
Score = 32.3 bits (72), Expect = 0.91
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 216 YHPRPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILRRHWVNPEP 76
Y P H+P + + L P PP L +P T PW + HW++ +P
Sbjct: 230 YLPPGHSPTPSSTPVSELSPEFPPTGL-SPPTQAPWDQKPHWIDHKP 275
>ref|NP_188919.1| (NM_113179) hypothetical protein [Arabidopsis thaliana]
dbj|BAB01255.1| (AB022223) extensin protein-like [Arabidopsis thaliana]
Length = 470
Score = 32.3 bits (72), Expect = 0.91
Identities = 20/58 (34%), Positives = 28/58 (47%)
Frame = -3
Query: 219 TYHPRPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILRRHWVNPEPLSLRANAFAP 46
TYH P NPC A P L P P++L+A + LQ W + + +P +N P
Sbjct: 28 TYHTPPINPC---FAHPFLPPITNPRLLKAFTALQAW---KFTITSDPNGFTSNWCGP 79
>dbj|BAB07984.1| (AP002525) hypothetical protein~similar to Oryza sativa chromosome
6, P0680A03.17 [Oryza sativa (japonica cultivar-group)]
Length = 732
Score = 32.3 bits (72), Expect = 0.91
Identities = 26/66 (39%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = -3
Query: 180 LALPCLRPR-------HPPQVLQAPSTLQPWILRRHWVNPEPLSLRANAFAPPRVRHCYP 22
L+ P RPR PP +L A +T P LRR V P P L A A R+R
Sbjct: 6 LSFPVDRPRVHSAGLSSPPPLLIATTTSPPACLRRRRVVPPPTRLAYYAAAVGRLRLHRR 65
Query: 21 PARAAA 4
PA AA
Sbjct: 66 PASVAA 71
>ref|NP_003918.1| (NM_003927) methyl-CpG binding domain protein 2, isoform 1 [Homo
sapiens]
gb|AAC68871.1| (AF072242) methyl-CpG binding protein MBD2 [Homo sapiens]
gb|AAD56597.1| (AF120994) methyl-CpG binding protein 2 [Homo sapiens]
Length = 411
Score = 32.3 bits (72), Expect = 0.91
Identities = 24/63 (38%), Positives = 30/63 (47%)
Frame = +2
Query: 44 GGAKALARRDNGSGLTQCRRRIQGCRVDGACRTCGGWRGRRHGKASVYRQGLCGRGW*VS 223
GG A+ + GS L + G R +GA GG RGR K + G+CGRG
Sbjct: 27 GGDSAIEQGGQGSALAPSP--VSGVRREGAR---GGGRGRGRWKQAGRGGGVCGRGRGRG 81
Query: 224 RGR 232
RGR
Sbjct: 82 RGR 84
>gb|AAK63874.1|AC074105_3 (AC074105) Hypothetical protein [Oryza sativa]
Length = 416
Score = 32.0 bits (71), Expect = 1.2
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -1
Query: 221 LPTTLVRTTLVCKRWLCHASDPAILRRFCKLHR--PCNLGFY 102
LP L R + VC W D A LRR +LH P GF+
Sbjct: 30 LPQALARASAVCPEWRRVVRDAAFLRRHRELHGGVPATAGFF 71
>sp|O33369|YOR2_NEIGO HYPOTHETICAL PROTEIN (ORF2)
emb|CAA05408.1| (AJ002423) hypothetical protein [Neisseria gonorrhoeae]
Length = 417
Score = 31.6 bits (70), Expect = 1.5
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = -3
Query: 279 QPLTNLESFLSIRDHSLPRLTYHPRPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILR 100
+P T L ++S H+ + T + P P TL P PP T P R
Sbjct: 301 KPATALTGYISALGHTAAKCTKNAAPTLPHSSTLP-----PNTPPTSSNTCPTWDPTTFR 355
Query: 99 RHWVN 85
RHW++
Sbjct: 356 RHWIH 360
>dbj|BAB84475.1| (AP003853) similar to Oryza sativa chromosome 1, P0455H0310.25
[Oryza sativa (japonica cultivar-group)]
Length = 426
Score = 31.2 bits (69), Expect = 2.0
Identities = 17/39 (43%), Positives = 19/39 (48%)
Frame = -1
Query: 242 EIIACLGLPTTLVRTTLVCKRWLCHASDPAILRRFCKLH 126
E + L +L R KRW AS PA LRRF LH
Sbjct: 33 EFLVRLPSVPSLARAACAVKRWRRVASSPAFLRRFHALH 71
>ref|XP_108011.1| (XM_108011) hypothetical protein XP_108011 [Homo sapiens]
Length = 294
Score = 30.8 bits (68), Expect = 2.6
Identities = 25/63 (39%), Positives = 28/63 (43%), Gaps = 6/63 (9%)
Frame = -3
Query: 171 PCLRPRHPPQVLQAPSTLQPWILR-----RHWVNPEPLSLRANAFAPPRVRHCYP-PARA 10
P P HPPQ LQ P + P R R NP PL+L A + C P P RA
Sbjct: 192 PTHSPPHPPQRLQPPVRVVPKPTRALSTLRQLHNPSPLALHALHW------ECSPHPERA 245
Query: 9 AAR 1
A R
Sbjct: 246 APR 248
>ref|NP_004089.1| (NM_004098) empty spiracles homolog 2 (Drosophila); empty spiracles
(Drosophila) homolog 2 [Homo sapiens]
sp|Q04743|EMX2_HUMAN Homeobox protein EMX2
emb|CAB82104.1| (AL161811) hypothetical protein [Homo sapiens]
gb|AAK95496.1|AF301598_1 (AF301598) empty spiracles-like protein [Homo sapiens]
Length = 252
Score = 30.8 bits (68), Expect = 2.6
Identities = 25/85 (29%), Positives = 34/85 (39%), Gaps = 13/85 (15%)
Frame = -3
Query: 228 PRLTYHPRPHNPCL*TLALPCLRPRHPPQVLQA--PSTLQPWILRRHW----------VN 85
P + HP P L LP HP Q PST PW++ R+ +
Sbjct: 81 PAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDTS 140
Query: 84 PEPLSL-RANAFAPPRVRHCYPPAR 13
PE L A A P R+R + P++
Sbjct: 141 PESFLLHNALARKPKRIRTAFSPSQ 165
>ref|XP_066267.1| (XM_066267) similar to contains similarity to cell wall-plasma
membrane linker protein~gene_id:MKA23.5 [Homo sapiens]
Length = 1039
Score = 30.8 bits (68), Expect = 2.6
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 228 PRLTYHPRPHNPCL*TLAL--PCLRPRHPPQVLQAPSTLQPWILRRHWVNPEPLSLRANA 55
PR RPH+ + + A P RP P VL AP+ P R H +P+ + + A
Sbjct: 250 PRPQRPHRPHSALIGSTAPSPPRERPHRPDSVLTAPTASSPPPQRPH--SPDSVLTASTA 307
Query: 54 FAPPR 40
+PPR
Sbjct: 308 SSPPR 312
>dbj|BAB68032.1| (AP003435) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 788
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/52 (40%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
Frame = -1
Query: 242 EIIACLGLPTTLVRTTLVCKRWLCHASDPAILRRFCKLHRPCN-LGFYVDIG 90
EI+ L +L R L K WL AS P LRRF H LG +V G
Sbjct: 13 EILLRLPSAASLQRAALASKCWLAVASGPDFLRRFRARHTSSPLLGLFVSHG 64
>emb|CAC59796.1| (AL390114) probable hypothetical 29.1 Kd protein [Leishmania major]
Length = 1694
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +2
Query: 5 AAARAGG*QCLTLGGAKALARRDNGSGLTQCRRRIQGCRVDGACRTCGGWRGRRHGK 175
A A +GG T+ GA++ + R + R + CR + +T G +GR+ G+
Sbjct: 959 AVAESGGPGETTVAGARSSSDRRHRRETAHKNSRHRRCRAEDKVKTANGAKGRKRGR 1015
>ref|NP_335015.1| (NC_002755) doxorubicin biosynthesis enzyme DnrV [Mycobacterium
tuberculosis CDC1551]
gb|AAK44829.1| (AE006958) doxorubicin biosynthesis enzyme DnrV [Mycobacterium
tuberculosis CDC1551]
Length = 263
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 45 GVRKHWHEEIMVLD*PNVDVESKVAGSMELAEPAEDGGVGGMA 173
GV HWH V D ++ AG +AEPA+ VG A
Sbjct: 202 GVPNHWHVYFAVDDADATAAKAAAAGGQVIAEPADIPSVGRFA 244
>ref|NP_215091.1| (NC_000962) hypothetical protein Rv0577 [Mycobacterium tuberculosis
H37Rv]
sp|O53774|CF30_MYCTU 27 kDa antigen Cfp30B
pir||H70933 hypothetical protein Rv0577 - Mycobacterium tuberculosis (strain
H37RV)
emb|CAA17448.1| (AL021942) hypothetical protein Rv0577 [Mycobacterium tuberculosis
H37Rv]
emb|CAA07636.1| (AJ007737) 27.3 kDa MAb HBT7 reactive antigen [Mycobacterium
tuberculosis]
Length = 261
Score = 30.4 bits (67), Expect = 3.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +3
Query: 45 GVRKHWHEEIMVLD*PNVDVESKVAGSMELAEPAEDGGVGGMA 173
GV HWH V D ++ AG +AEPA+ VG A
Sbjct: 200 GVPNHWHVYFAVDDADATAAKAAAAGGQVIAEPADIPSVGRFA 242
>ref|NP_032048.1| (NM_008022) forkhead box D4; forkhead homolog 2, (Drosophila) [Mus
musculus]
sp|Q60688|FXD4_MOUSE FORKHEAD BOX PROTEIN D4 (FORKHEAD-RELATED PROTEIN FKHL9)
(FORKHEAD-RELATED TRANSCRIPTION FACTOR 5) (FREAC-5)
(TRANSCRIPTION FACTOR FKH-2)
emb|CAA60128.1| (X86368) transcription factor [Mus musculus]
Length = 444
Score = 30.4 bits (67), Expect = 3.4
Identities = 18/46 (39%), Positives = 23/46 (49%)
Frame = -3
Query: 159 PRHPPQVLQAPSTLQPWILRRHWVNPEPLSLRANAFAPPRVRHCYP 22
P PP V QP +L R+ P+P +L A+ APPR C P
Sbjct: 213 PFPPPAVPATLHVSQPSLLLRYSAPPQP-NLAAHPAAPPRSHPCAP 257
>ref|NP_376066.1| (NC_003106) 304aa long hypothetical glutamate-1-semialdehyde
2,1-aminomutase [Sulfolobus tokodaii]
dbj|BAB65175.1| (AP000981) 304aa long hypothetical glutamate-1-semialdehyde
2,1-aminomutase [Sulfolobus tokodaii]
Length = 304
Score = 30.0 bits (66), Expect = 4.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 251 SQFEIIACLGLPTTLVRTTLVCK 183
S+F +I G+PT+++ T +VCK
Sbjct: 39 SEFNVIISSGIPTSIINTVIVCK 61
>gb|AAM22077.1| (AF483216) minor histocompatibility antigen H13 isoform 1 [Mus
musculus]
Length = 282
Score = 30.0 bits (66), Expect = 4.5
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 350 FAKHVPDHYYLMLSP*TFLRGGGSNR*PTLNLSSQFEIIACLGLPTTLVRTTLVCKRWLC 171
F + P+ Y +L F +G G N+ +N + + CLGL + + L+ K W+
Sbjct: 67 FPANFPNRQYQLL----FTQGSGENKEEIINYEFDTKDLVCLGLSSVIGVWYLLRKHWIA 122
Query: 170 H 168
+
Sbjct: 123 N 123
>ref|NP_034506.1| (NM_010376) histocompatibility 13 [Mus musculus]
dbj|BAB25172.1| (AK007664) data source:MGD, source key:MGI:95886,
evidence:ISS~histocompatibility 13~putative [Mus
musculus]
Length = 378
Score = 29.6 bits (65), Expect = 5.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 350 FAKHVPDHYYLMLSP*TFLRGGGSNR*PTLNLSSQFEIIACLGLPTTLVRTTLVCKRWLC 171
F + P+ Y +L F +G G N+ +N + + CLGL + + L+ K W+
Sbjct: 129 FPANFPNRQYQLL----FTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIA 184
Query: 170 H 168
+
Sbjct: 185 N 185
>gb|AAM22075.1|AF483214_1 (AF483214) minor histocompatibility antigen H13 isoform 1 [Mus
musculus]
Length = 378
Score = 29.6 bits (65), Expect = 5.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 350 FAKHVPDHYYLMLSP*TFLRGGGSNR*PTLNLSSQFEIIACLGLPTTLVRTTLVCKRWLC 171
F + P+ Y +L F +G G N+ +N + + CLGL + + L+ K W+
Sbjct: 129 FPANFPNRQYQLL----FTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIA 184
Query: 170 H 168
+
Sbjct: 185 N 185
>dbj|BAB90340.1| (AP003535) hypothetical protein~similar to Oryza sativa chromosome
1, P0409B08.20 [Oryza sativa (japonica cultivar-group)]
Length = 699
Score = 29.6 bits (65), Expect = 5.9
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = -3
Query: 180 LALPCLRPR-------HPPQVLQAPSTLQPWILRRHWVNPEPLSLRANAFAPPRVRHCYP 22
L+ P RPR PP +L +T P LRR + P P L A A R+R
Sbjct: 6 LSFPVDRPRVHSAGLSSPPPLLITTTTSPPACLRRRRLVPPPTRLAYYAAAVGRLRLHRR 65
Query: 21 PARAAA 4
PA AA
Sbjct: 66 PASVAA 71
>ref|XP_098679.1| (XM_098679) hypothetical protein XP_098679 [Homo sapiens]
Length = 93
Score = 29.6 bits (65), Expect = 5.9
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 96 HWVNPEPLSLRANAFAPP-RVRHCYPPARAAA 4
HW PLS A+A +PP R C+P ARAAA
Sbjct: 26 HWT--PPLSPCASALSPPARTPACWPAARAAA 55
>dbj|BAB28346.1| (AK012600) data source:MGD, source key:MGI:95886,
evidence:ISS~histocompatibility 13~putative [Mus
musculus]
Length = 416
Score = 29.6 bits (65), Expect = 5.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = -1
Query: 350 FAKHVPDHYYLMLSP*TFLRGGGSNR*PTLNLSSQFEIIACLGLPTTLVRTTLVCKRWLC 171
F + P+ Y +L F +G G N+ +N + + CLGL + + L+ K W+
Sbjct: 167 FPANFPNRQYQLL----FTQGSGENKEEIINYEFDTKDLVCLGLSSVVGVWYLLRKHWIA 222
Query: 170 H 168
+
Sbjct: 223 N 223
>gb|AAK58050.1| (AF378547) H+ transporting ATP synthase inhibitor-like protein
[Ophiostoma novo-ulmi]
Length = 83
Score = 29.3 bits (64), Expect = 7.7
Identities = 23/70 (32%), Positives = 28/70 (39%)
Frame = -3
Query: 237 HSLPRLTYHPRPHNPCL*TLALPCLRPRHPPQVLQAPSTLQPWILRRHWVNPEPLSLRAN 58
+SLP HP P P LP PR PP + +P+TL P + R
Sbjct: 2 NSLPLPARHPSPSAPLP---PLPSACPRVPPVLPPSPATLTP-------SSAASAPTRTT 51
Query: 57 AFAPPRVRHC 28
FA R R C
Sbjct: 52 PFASVRRRSC 61
>ref|XP_104709.1| (XM_104709) hypothetical protein XP_104709 [Homo sapiens]
Length = 54
Score = 29.3 bits (64), Expect = 7.7
Identities = 16/52 (30%), Positives = 25/52 (47%)
Frame = -3
Query: 282 QQPLTNLESFLSIRDHSLPRLTYHPRPHNPCL*TLALPCLRPRHPPQVLQAP 127
Q+P T ++FL +H + + P P + +LP + P HPP Q P
Sbjct: 4 QEPPTPAQTFLITLNHPMLPVNISPLPPH------SLPTIPPIHPPMTPQIP 49
>dbj|BAB63775.1| (AP003607) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 229
Score = 29.3 bits (64), Expect = 7.7
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +2
Query: 44 GGAKALARRDNGSGLTQCRRRIQGCRVDGACRTCGGWRGRRHGKASVYRQGLCGRGW*VS 223
GGA+A ARRD+G+ + RR++G DGA RRH R+G GRG
Sbjct: 33 GGARA-ARRDDGARRRRKARRLRG---DGA--AASEVEARRHDNGGA-RKGDGGRGGRRE 85
Query: 224 RGRL*SRIERKDSRLVSGCC 283
GR R R+ R + C
Sbjct: 86 EGR---RGRRRGKRAATRRC 102
>ref|XP_072236.2| (XM_072236) gastrulation brain homeo box 2 [Homo sapiens]
Length = 345
Score = 29.3 bits (64), Expect = 7.7
Identities = 39/129 (30%), Positives = 49/129 (37%), Gaps = 12/129 (9%)
Frame = -3
Query: 396 PGVMMLQ*PLGLG*SFC*TCA*SLLS--------HVVTLNFP*RRWQQPLTNLESFLSIR 241
P +MM+Q PLG +F SL+ H V +P F+ R
Sbjct: 7 PSLMMMQRPLGSSTAFSID---SLIGSPPQPSPGHFVYTGYP------------MFMPYR 51
Query: 240 DHSLPRLTYHPRPHNPCL*TLAL-PCLRPRHPPQVLQAPSTLQPWILRRHWVNP---EPL 73
LP P P P L AL P L P HP + + T RR W +P P
Sbjct: 52 PVVLPP----PPPPPPALPQAALQPALPPAHPHHQIPSLPTWSAPAWRRAWRSPLRSWPR 107
Query: 72 SLRANAFAP 46
S A+ FAP
Sbjct: 108 SPAASPFAP 116
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,857,937
Number of Sequences: 922381
Number of extensions: 5233021
Number of successful extensions: 12028
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 11675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12008
length of database: 289,601,141
effective HSP length: 113
effective length of database: 185,372,088
effective search space used: 4448930112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)