The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_D09_T7.seq Fgr-S3_1_D09_T7 LENGTH:379bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_D09 ; CLONELIB: n/a
(379 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL75983.1|AF466203_12 (AF466203) putative gag-pol precu... 39 0.010
gb|AAL75487.1|AF466202_13 (AF466202) putative gag-pol precu... 39 0.010
gb|AAL75982.1|AF466203_11 (AF466203) putative prpol [Zea mays] 39 0.010
gb|AAM22642.1|AF464767_1 (AF464767) gag/pol protein [Zea mays] 37 0.030
gb|AAL75984.1|AF466203_13 (AF466203) putative prpol [Zea mays] 37 0.030
gb|AAL68846.1|AF466199_5 (AF466199) putative GAG-POL precur... 36 0.087
gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor] >gi... 35 0.15
dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12... 35 0.19
gb|AAK13088.1|AC078839_4 (AC078839) Gag-Pol precursor [Oryz... 35 0.19
pir||T01325 hypothetical protein III.4H10.2 - maize >gi|283... 34 0.33
gb|AAL82662.1|AC092387_10 (AC092387) putative GAG-POL precu... 33 0.56
gb|AAM22011.1|AC093178_6 (AC093178) Putative gag-pol precur... 33 0.56
gb|AAK43497.1|AC020666_7 (AC020666) gag-pol precursor [Oryz... 33 0.56
gb|AAM00991.1|AC090482_20 (AC090482) Putative retroelement ... 33 0.56
dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa ... 33 0.56
dbj|BAB90647.1| (AP003933) putative GAG-POL precursor [Oryz... 33 0.56
dbj|BAA99536.1| (AP002484) putative gypsy-type retrotranspo... 33 0.56
dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-ty... 33 0.56
gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sati... 33 0.56
gb|AAK27822.1|AC022457_25 (AC022457) putative gag-pol precu... 33 0.56
gb|AAL91601.1|AC099400_7 (AC099400) Putative gag-pol precur... 33 0.56
gb|AAL58229.1|AC084762_3 (AC084762) putative gag-pol precur... 33 0.56
gb|AAK92558.1|AC051624_16 (AC051624) Putative retroelement ... 33 0.56
gb|AAL67586.1|AC018929_8 (AC018929) putative GAG-POL precur... 33 0.56
gb|AAG46176.1|AC018727_28 (AC018727) putative gypsy-type re... 33 0.56
gb|AAM00949.1|AC021892_13 (AC021892) Putative retroelement ... 33 0.56
gb|AAL93054.1|AC093180_1 (AC093180) putative GAG-POL precur... 32 0.96
gb|AAG59655.1|AC084319_13 (AC084319) putative gypsy-type re... 32 0.96
gb|AAL75988.1|AF466204_3 (AF466204) putative GAG-POL precur... 32 1.3
dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana ... 32 1.6
dbj|BAB90375.1| (AP003561) putative polyprotein [Oryza sati... 31 2.1
ref|NP_178912.1| (NM_126870) putative retroelement gag/pol ... 30 3.7
ref|NP_179114.1| (NM_127072) putative retroelement pol poly... 30 4.8
pir||S34037 1,4-alpha-glucan branching enzyme (EC 2.4.1.18)... 30 4.8
gb|AAM01166.1|AC113336_18 (AC113336) Putative retroelement ... 30 4.8
pir||JX0243 1,4-alpha-glucan branching enzyme (EC 2.4.1.18)... 30 4.8
sp|Q01401|GLGB_ORYSA 1,4-alpha-glucan branching enzyme (Sta... 30 4.8
gb|AAL91598.1|AC099400_4 (AC099400) Putative gag-pol precur... 30 6.2
pir||T14595 polyprotein - maize retrotransposon Cinful-1 >g... 30 6.2
gb|AAL76007.1|AF466646_15 (AF466646) prpol [Zea mays] 30 6.2
ref|NP_416787.1| (NC_000913) NADH dehydrogenase I chain F [... 29 8.1
gb|AAA03537.1| (L25055) NADH dehydrogenase [Escherichia coli] 29 8.1
ref|NP_288858.1| (NC_002655) NADH dehydrogenase I chain F [... 29 8.1
gb|AAF54285.1| (AE003680) CG8236 gene product [Drosophila m... 29 8.1
pir||S38315 NADH dehydrogenase I chain nuoF - Escherichia c... 29 8.1
gb|AAF48260.1| (AE003492) CG10617 gene product [Drosophila ... 29 8.1
ref|NP_342494.1| (NC_002754) Formate hydrogenlyase subunit ... 29 8.1
ref|NP_378124.1| (NC_003106) 219aa long conserved hypotheti... 29 8.1
>gb|AAL75983.1|AF466203_12 (AF466203) putative gag-pol precursor -orf2 [Zea mays]
Length = 1007
Score = 38.9 bits (89), Expect = 0.010
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CIS EG +LQEIH G CGHH P
Sbjct: 693 CISIAEGRELLQEIHSGACGHHAAP 717
>gb|AAL75487.1|AF466202_13 (AF466202) putative gag-pol precursor -orf2 [Zea mays]
Length = 627
Score = 38.9 bits (89), Expect = 0.010
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CIS EG +LQEIH G CGHH P
Sbjct: 561 CISIAEGQELLQEIHSGACGHHAAP 585
>gb|AAL75982.1|AF466203_11 (AF466203) putative prpol [Zea mays]
Length = 1854
Score = 38.9 bits (89), Expect = 0.010
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CIS EG +LQEIH G CGHH P
Sbjct: 1558 CISIAEGRELLQEIHSGACGHHAAP 1582
>gb|AAM22642.1|AF464767_1 (AF464767) gag/pol protein [Zea mays]
Length = 222
Score = 37.4 bits (85), Expect = 0.030
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CIS EG +L+EIH G CGHH P
Sbjct: 112 CISIAEGQELLREIHSGACGHHAAP 136
>gb|AAL75984.1|AF466203_13 (AF466203) putative prpol [Zea mays]
Length = 1850
Score = 37.4 bits (85), Expect = 0.030
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CIS EG +L+EIH G CGHH P
Sbjct: 1678 CISIAEGRELLREIHSGACGHHAAP 1702
>gb|AAL68846.1|AF466199_5 (AF466199) putative GAG-POL precursor [Sorghum bicolor]
Length = 310
Score = 35.8 bits (81), Expect = 0.087
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CI +EG +LQ++H G CGHH P
Sbjct: 152 CIPRQEGIKLLQDVHSGACGHHTAP 176
>gb|AAD19359.1| (AF098806) polyprotein [Sorghum bicolor]
gb|AAD27571.1|AF114171_12 (AF114171) polyprotein [Sorghum bicolor]
Length = 1877
Score = 35.0 bits (79), Expect = 0.15
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
CIS EG +L+EIH G CG H+ P
Sbjct: 1521 CISQSEGRELLREIHSGMCGSHIGP 1545
>dbj|BAA84632.1| (AP000492) ESTs C26347(C12145),AU078074(C12145) correspond to a
region of the predicted gene.~similar to prpol; Zea mays
retrotransposon Cinful-1. (AF049110) [Oryza sativa
(japonica cultivar-group)]
dbj|BAA85207.1| (AP000570) ESTs C26347(C12145),AU078074(C12145) correspond to a
region of the predicted gene.~Similar to prpol; Zea mays
retrotransposon Cinful-1. (AF049110) [Oryza sativa
(japonica cultivar-group)]
Length = 1583
Score = 34.7 bits (78), Expect = 0.19
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +LQ+IH G CG+H
Sbjct: 1233 CVSLEEGRQLLQDIHSGICGNH 1254
>gb|AAK13088.1|AC078839_4 (AC078839) Gag-Pol precursor [Oryza sativa]
Length = 677
Score = 34.7 bits (78), Expect = 0.19
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +LQ+IH G CG+H
Sbjct: 528 CVSLEEGRQLLQDIHKGICGNH 549
>pir||T01325 hypothetical protein III.4H10.2 - maize
gb|AAC01575.1| (AF031569) hypothetical protein [Zea mays]
Length = 224
Score = 33.9 bits (76), Expect = 0.33
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
C++ EG IL+E+H GTCG H P
Sbjct: 132 CVTETEGVQILREVHSGTCGSHAGP 156
>gb|AAL82662.1|AC092387_10 (AC092387) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
gb|AAM18149.1|AC092172_9 (AC092172) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1964
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1603 CVSLEEGRQLLKDIHSGICGNH 1624
>gb|AAM22011.1|AC093178_6 (AC093178) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1933
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1656 CVSLEEGRQLLKDIHSGICGNH 1677
>gb|AAK43497.1|AC020666_7 (AC020666) gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1656 CVSLEEGRQLLKDIHSGICGNH 1677
>gb|AAM00991.1|AC090482_20 (AC090482) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 2017
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1656 CVSLEEGRQLLKDIHSGICGNH 1677
>dbj|BAA84458.1| (AB030283) GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1032
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 671 CVSLEEGRQLLKDIHSGICGNH 692
>dbj|BAB90647.1| (AP003933) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1032
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 671 CVSLEEGRQLLKDIHSGICGNH 692
>dbj|BAA99536.1| (AP002484) putative gypsy-type retrotransposon RIRE2 GAG-POL
precursor [Oryza sativa (japonica cultivar-group)]
Length = 1032
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 671 CVSLEEGRQLLKDIHSGICGNH 692
>dbj|BAB03352.1| (AP002486) Similar to Oryza sativa gypsy-type retrotransposon
RIRE2; GAG-POL precursor -orf2 (AB030283) [Oryza sativa
(japonica cultivar-group)]
Length = 1032
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 671 CVSLEEGRQLLKDIHSGICGNH 692
>gb|AAD27548.1|AF111709_2 (AF111709) polyprotein [Oryza sativa subsp. indica] [Oryza sativa
(indica cultivar-group)]
Length = 829
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 468 CVSLEEGRQLLKDIHSGICGNH 489
>gb|AAK27822.1|AC022457_25 (AC022457) putative gag-pol precursor [Oryza sativa]
Length = 1720
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1392 CVSLEEGRQLLKDIHSGICGNH 1413
>gb|AAL91601.1|AC099400_7 (AC099400) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 1416
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1316 CVSLEEGRQLLKDIHSGICGNH 1337
>gb|AAL58229.1|AC084762_3 (AC084762) putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1656 CVSLEEGRQLLKDIHSGICGNH 1677
>gb|AAK92558.1|AC051624_16 (AC051624) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1429
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1377 CVSLEEGRQLLKDIHSGICGNH 1398
>gb|AAL67586.1|AC018929_8 (AC018929) putative GAG-POL precursor [Oryza sativa]
Length = 1099
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 738 CVSLEEGRQLLKDIHSGICGNH 759
>gb|AAG46176.1|AC018727_28 (AC018727) putative gypsy-type retrotransposon GAG-POL precursor
[Oryza sativa]
Length = 236
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 7 CVSLEEGRQLLKDIHSGICGNH 28
>gb|AAM00949.1|AC021892_13 (AC021892) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1945
Score = 33.1 bits (74), Expect = 0.56
Identities = 12/22 (54%), Positives = 17/22 (76%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S EEG +L++IH G CG+H
Sbjct: 1584 CVSLEEGRQLLKDIHSGICGNH 1605
>gb|AAL93054.1|AC093180_1 (AC093180) putative GAG-POL precursor [Oryza sativa (japonica
cultivar-group)]
Length = 307
Score = 32.3 bits (72), Expect = 0.96
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S E+G +L++IH G CG+H
Sbjct: 103 CVSVEQGRQLLKDIHSGICGNH 124
>gb|AAG59655.1|AC084319_13 (AC084319) putative gypsy-type retrotransposon [Oryza sativa]
Length = 1185
Score = 32.3 bits (72), Expect = 0.96
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 283 LTTISP*CISPEEGN*ILQEIHPGTCGHH 369
L T P +S EEG +L++IH G CG+H
Sbjct: 947 LLTTPPCYVSLEEGKQLLKDIHSGICGNH 975
>gb|AAL75988.1|AF466204_3 (AF466204) putative GAG-POL precursor -orf2 protein [Sorghum
bicolor]
Length = 756
Score = 32.0 bits (71), Expect = 1.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
CIS ++G +L++IH G+CG+H
Sbjct: 501 CISQDDGIKLLEDIHAGSCGNH 522
>dbj|BAA96774.2| (AP002521) Similar to Arabidopsis thaliana chromosome II BAC F26H6;
putative retroelement pol polyprotein (AC006920) [Oryza
sativa (japonica cultivar-group)]
dbj|BAB08213.2| (AP002539) Similar to Arabidopsis thaliana chromosome II BAC F26H6;
putative retroelement pol polyprotein (AC006920) [Oryza
sativa (japonica cultivar-group)]
Length = 2876
Score = 31.6 bits (70), Expect = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+ E N +LQE+H G CG H
Sbjct: 2510 CVDRSEANRVLQEVHHGVCGGH 2531
>dbj|BAB90375.1| (AP003561) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2001
Score = 31.2 bits (69), Expect = 2.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHMRP 378
C++ EEG ++ EIH G CG H P
Sbjct: 1644 CVTREEGMKMVVEIHEGLCGAHQAP 1668
>ref|NP_178912.1| (NM_126870) putative retroelement gag/pol polyprotein [Arabidopsis
thaliana]
gb|AAD22505.1| (AC007045) putative retroelement gag/pol polyprotein [Arabidopsis
thaliana]
Length = 1212
Score = 30.4 bits (67), Expect = 3.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
CI E+ +++EIH GTCG+H
Sbjct: 923 CIFGEQTRTVIKEIHDGTCGNH 944
>ref|NP_179114.1| (NM_127072) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD03367.1| (AC005957) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1329
Score = 30.0 bits (66), Expect = 4.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
CI E+ +++E+H GTCG+H
Sbjct: 980 CIFGEQTRTVMKEVHDGTCGNH 1001
>pir||S34037 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) sbe1 precursor -
rice
dbj|BAA01616.1| (D10838) 1,4-alpha-glucan branching enzyme [Oryza sativa (japonica
cultivar-group)]
Length = 820
Score = 30.0 bits (66), Expect = 4.8
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Frame = +3
Query: 114 AMQDLV-TPFGRSNFQTCIPLRKGKFWSIIYKNNNARPTKIYKRFTSLSKL-----TIRR 275
+M ++V T R + CI + SI+ A + +T +S L TI R
Sbjct: 508 SMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINR 567
Query: 276 G---QSHYHLSVMHLSGGGQLNFAGNSSRH 356
G Q H M L G G LNF GN H
Sbjct: 568 GIALQKMIHFITMALGGDGYLNFMGNEFGH 597
>gb|AAM01166.1|AC113336_18 (AC113336) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 627
Score = 30.0 bits (66), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHM 372
C+S ++G +L +IH G CG H+
Sbjct: 449 CVSTDDGRQLLLDIHKGICGSHV 471
>pir||JX0243 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) I precursor - rice
dbj|BAA01855.1| (D11082) branching enzyme-I precursor [Oryza sativa (japonica
cultivar-group)]
gb|AAD28284.1|AF136268_1 (AF136268) starch-branching enzyme I [Oryza sativa subsp. japonica]
[Oryza sativa (japonica cultivar-group)]
Length = 820
Score = 30.0 bits (66), Expect = 4.8
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Frame = +3
Query: 114 AMQDLV-TPFGRSNFQTCIPLRKGKFWSIIYKNNNARPTKIYKRFTSLSKL-----TIRR 275
+M ++V T R + CI + SI+ A + +T +S L TI R
Sbjct: 508 SMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINR 567
Query: 276 G---QSHYHLSVMHLSGGGQLNFAGNSSRH 356
G Q H M L G G LNF GN H
Sbjct: 568 GIALQKMIHFITMALGGDGYLNFMGNEFGH 597
>sp|Q01401|GLGB_ORYSA 1,4-alpha-glucan branching enzyme (Starch branching enzyme)
(Q-enzyme)
dbj|BAA01584.1| (D10752) branching enzyme [Oryza sativa]
prf||1905427A starch-branching enzyme [Oryza sativa]
Length = 820
Score = 30.0 bits (66), Expect = 4.8
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Frame = +3
Query: 114 AMQDLV-TPFGRSNFQTCIPLRKGKFWSIIYKNNNARPTKIYKRFTSLSKL-----TIRR 275
+M ++V T R + CI + SI+ A + +T +S L TI R
Sbjct: 508 SMSEIVQTLTNRRYTEKCIAYAESHDQSIVGDKTIAFLLMDKEMYTGMSDLQPASPTINR 567
Query: 276 G---QSHYHLSVMHLSGGGQLNFAGNSSRH 356
G Q H M L G G LNF GN H
Sbjct: 568 GIALQKMIHFITMALGGDGYLNFMGNEFGH 597
>gb|AAL91598.1|AC099400_4 (AC099400) Putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)]
Length = 791
Score = 29.6 bits (65), Expect = 6.2
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHH 369
C+S ++G +L +IH G CG H
Sbjct: 604 CVSSDDGKHLLLDIHEGICGSH 625
>pir||T14595 polyprotein - maize retrotransposon Cinful-1
gb|AAD11615.1| (AF049110) prpol [Zea mays]
Length = 1317
Score = 29.6 bits (65), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHM 372
C+S EG +++EIH G CG H+
Sbjct: 958 CLSRTEGIELMKEIHAGLCGSHI 980
>gb|AAL76007.1|AF466646_15 (AF466646) prpol [Zea mays]
Length = 1317
Score = 29.6 bits (65), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = +1
Query: 304 CISPEEGN*ILQEIHPGTCGHHM 372
C+S EG +++EIH G CG H+
Sbjct: 958 CLSRTEGIELMKEIHAGLCGSHI 980
>ref|NP_416787.1| (NC_000913) NADH dehydrogenase I chain F [Escherichia coli K12]
sp|P31979|NUOF_ECOLI NADH dehydrogenase I chain F (NADH-ubiquinone oxidoreductase chain
6) (NUO6)
pir||B65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain F -
Escherichia coli
gb|AAC75344.1| (AE000317) NADH dehydrogenase I chain F [Escherichia coli K12]
dbj|BAA16113.1| (D90859) NADH DEHYDROGENASE I CHAIN F (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 6) (NUO6). [Escherichia coli]
dbj|BAA16118.1| (D90860) NADH DEHYDROGENASE I CHAIN F (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 6) (NUO6). [Escherichia coli]
Length = 445
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +3
Query: 69 TTLYMITDFGLKMVLAMQDLVTPFGRSNFQTCIPLRKGKFWSI 197
T L M D + MV +++L F R + C P R G WS+
Sbjct: 323 TALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSV 365
>gb|AAA03537.1| (L25055) NADH dehydrogenase [Escherichia coli]
Length = 445
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +3
Query: 69 TTLYMITDFGLKMVLAMQDLVTPFGRSNFQTCIPLRKGKFWSI 197
T L M D + MV +++L F R + C P R G WS+
Sbjct: 323 TALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSV 365
>ref|NP_288858.1| (NC_002655) NADH dehydrogenase I chain F [Escherichia coli O157:H7
EDL933]
ref|NP_311195.1| (NC_002695) NADH dehydrogenase I chain F [Escherichia coli O157:H7]
gb|AAG57413.1|AE005460_7 (AE005460) NADH dehydrogenase I chain F [Escherichia coli O157:H7
EDL933]
dbj|BAB36591.1| (AP002561) NADH dehydrogenase I chain F [Escherichia coli O157:H7]
Length = 445
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +3
Query: 69 TTLYMITDFGLKMVLAMQDLVTPFGRSNFQTCIPLRKGKFWSI 197
T L M D + MV +++L F R + C P R G WS+
Sbjct: 323 TALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSV 365
>gb|AAF54285.1| (AE003680) CG8236 gene product [Drosophila melanogaster]
Length = 459
Score = 29.3 bits (64), Expect = 8.1
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 5/66 (7%)
Frame = -1
Query: 361 HRCLDE--FPAKFSCPPPERCITERW**D*P---LRMVSLESEVKRL*IFVGLALLFLYI 197
HR +D+ + AKF C P ++ ++ + + P MV+L+ + + L V + LF YI
Sbjct: 211 HRFVDKSSWYAKFLCAPRDKRVSWQSRVEHPGQNFSMVTLDEQAENLMDAVSMVTLFYYI 270
Query: 196 ILQNFP 179
I FP
Sbjct: 271 ISLKFP 276
>pir||S38315 NADH dehydrogenase I chain nuoF - Escherichia coli
emb|CAA48365.1| (X68301) NADH dehydrogenase I, subunit nuoF [Escherichia coli]
Length = 445
Score = 29.3 bits (64), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (47%)
Frame = +3
Query: 69 TTLYMITDFGLKMVLAMQDLVTPFGRSNFQTCIPLRKGKFWSI 197
T L M D + MV +++L F R + C P R G WS+
Sbjct: 323 TALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSV 365
>gb|AAF48260.1| (AE003492) CG10617 gene product [Drosophila melanogaster]
Length = 787
Score = 29.3 bits (64), Expect = 8.1
Identities = 12/39 (30%), Positives = 22/39 (55%)
Frame = +3
Query: 234 YKRFTSLSKLTIRRGQSHYHLSVMHLSGGGQLNFAGNSS 350
+KRF ++ K R Q + + ++GGG ++ G+SS
Sbjct: 78 FKRFDTIDKEDYNRSQQTHQTHLFLMNGGGAVSITGSSS 116
>ref|NP_342494.1| (NC_002754) Formate hydrogenlyase subunit 3 (hycC) [Sulfolobus
solfataricus]
gb|AAK41284.1| (AE006721) Formate hydrogenlyase subunit 3 (hycC) [Sulfolobus
solfataricus]
Length = 621
Score = 29.3 bits (64), Expect = 8.1
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = +3
Query: 48 DHVAKWKTTLYMITDFGLKMVLAMQDLVTPFGRSNFQTCIPLRKGKFWSIIYKNNNARPT 227
DH KW + LY++T G+ +VL + T IP + +I N RP
Sbjct: 110 DHYGKWLSPLYILTILGMTIVLNSDGYLLFLAGWEIMT-IP----AYVAIGLTAKNNRPP 164
Query: 228 KIYKRFTSLSKLTIRRG 278
++ F LS + I G
Sbjct: 165 FVFMAFGELSTVLILAG 181
>ref|NP_378124.1| (NC_003106) 219aa long conserved hypothetical protein [Sulfolobus
tokodaii]
dbj|BAB67233.1| (AP000989) 219aa long conserved hypothetical protein [Sulfolobus
tokodaii]
Length = 219
Score = 29.3 bits (64), Expect = 8.1
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +3
Query: 195 IIYKNNNARPTKIYKRFTSLSKLTIRRGQ 281
IIY N++ RP K Y RF L++ + GQ
Sbjct: 92 IIYVNSDMRPPKNYNRFIGLAEQLLLHGQ 120
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,989,755
Number of Sequences: 922381
Number of extensions: 4252205
Number of successful extensions: 9792
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 9579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9792
length of database: 289,601,141
effective HSP length: 101
effective length of database: 196,440,660
effective search space used: 4714575840
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)