The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_D09_T7.seq Fgr-S3_1_D09_T7 LENGTH:379bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_D09 ; CLONELIB: n/a
(379 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 clone C... 42 0.41
gb|AC011596.26| Homo sapiens 12 NOVECTOR RP11-117B7 (Roswel... 40 1.6
ref|NM_064611.1| Alcohol/other dehydrogenases, short chain ... 40 1.6
ref|NM_031073.1| Rattus norvegicus neurotrophin-3 (HDNF/NT-... 40 1.6
ref|NM_002527.2| Homo sapiens neurotrophin 3 (NTF3), mRNA 40 1.6
emb|Z83236.1|CEK10H10 Caenorhabditis elegans cosmid K10H10,... 40 1.6
emb|AL606751.5|AL606751 Zebrafish DNA sequence from clone X... 40 1.6
emb|AL596167.1|AL596167 Listeria innocua Clip11262 complete... 40 1.6
emb|Z82198.2|HS302D9 Human DNA sequence from clone RP1-302D... 40 1.6
gb|S75811.1|S75811 NT-3 {3' region} [mice, mRNA Partial, 32... 40 1.6
emb|X53257.1|MMNT3 M.musculus NT-3 gene for neurotrophin-3 40 1.6
gb|M61179.1|RATNT3A Rat neurotrophin-3 gene, complete cds, ... 40 1.6
gb|M61180.1|HUMNT3A Human neurotrophin-3 gene, complete cds... 40 1.6
gb|M37763.1|HUMNT3 Human neurotrophin-3 (NT-3) gene, comple... 40 1.6
gb|M33968.1|RATNT3 Rat neurotrophin-3 (NT-3) gene, complete... 40 1.6
gb|M34643.1|RATHDNFNT Rat neurotrophin-3 (HDNF/NT-3) mRNA, ... 40 1.6
gb|AF063008.1| Caenorhabditis elegans cosmid F25F1, complet... 38 6.4
gb|AE010949.1| Methanosarcina acetivorans str. C2A, section... 38 6.4
gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, c... 38 6.4
gb|AC096634.2| Homo sapiens chromosome 1 clone RP11-66M7, c... 38 6.4
gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, c... 38 6.4
gb|AC019235.6| Homo sapiens BAC clone RP11-665C14 from 4, c... 38 6.4
gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, co... 38 6.4
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 38 6.4
gb|AE002812.2|AE002812 Drosophila melanogaster genomic scaf... 38 6.4
gb|AC012072.2|AC012072 Homo sapiens BAC clone RP11-425J3 fr... 38 6.4
emb|AL645727.15| Mouse DNA sequence from clone RP23-20G7 on... 38 6.4
emb|AL391497.9|AL391497 Human DNA sequence from clone RP11-... 38 6.4
emb|AL645821.1|AL645821 Human DNA sequence from clone RP3-4... 38 6.4
emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-2... 38 6.4
gb|AF241728.1|AF241728 Homo sapiens PAC 646N3 chromosome X ... 38 6.4
gb|AF241727.1|AF241727 Homo sapiens chromosome X clone PAC ... 38 6.4
gb|AC007880.2|AC007880 Homo sapiens BAC clone RP11-323F11 f... 38 6.4
emb|AL121769.4|CNS01DSD Human chromosome 14 DNA sequence BA... 38 6.4
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 6.4
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 38 6.4
emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for fla... 38 6.4
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 38 6.4
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 6.4
gb|U69958.1|TCU69958 Trypanosoma cruzi cdc2-related protein... 38 6.4
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 6.4
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 38 6.4
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 38 6.4
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 38 6.4
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 38 6.4
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 38 6.4
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 38 6.4
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 38 6.4
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 6.4
emb|AJ271735.1|HSA271735 Homo sapiens Xq pseudoautosomal re... 38 6.4
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 38 6.4
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 38 6.4
emb|AJ243213.1|HSA243213 Homo sapiens partial 5-HT4 recepto... 38 6.4
emb|Z94801.1|HS465G10B Human DNA sequence from PAC 465G10 o... 38 6.4
gb|S57126.1|S57126 dgc1=guanylyl cyclase [Drosophila melano... 38 6.4
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 38 6.4
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 6.4
>gb|AF001550.1|HSAF001550 Homo sapiens chromosome 16 clone CIT987SK-334D11 map 16p12, complete
sequence
Length = 173882
Score = 42.1 bits (21), Expect = 0.41
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 184 aattttggagtataatatataaaaa 208
|||||||||||||||||| ||||||
Sbjct: 138855 aattttggagtataatatttaaaaa 138879
>gb|AC011596.26| Homo sapiens 12 NOVECTOR RP11-117B7 (Roswell Park Cancer Institute
Human BAC Library) complete sequence
Length = 100414
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 195 ataatatataaaaacaataa 214
||||||||||||||||||||
Sbjct: 84424 ataatatataaaaacaataa 84405
>ref|NM_064611.1| Alcohol/other dehydrogenases, short chain type
Length = 948
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 agaaaaggaaaattttggag 193
||||||||||||||||||||
Sbjct: 200 agaaaaggaaaattttggag 219
>ref|NM_031073.1| Rattus norvegicus neurotrophin-3 (HDNF/NT-3) (Ntf3), mRNA
Length = 1020
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 940 tataatatataaaaacaata 921
>ref|NM_002527.2| Homo sapiens neurotrophin 3 (NTF3), mRNA
Length = 1060
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 980 tataatatataaaaacaata 961
>emb|Z83236.1|CEK10H10 Caenorhabditis elegans cosmid K10H10, complete sequence
Length = 30033
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174 agaaaaggaaaattttggag 193
||||||||||||||||||||
Sbjct: 15072 agaaaaggaaaattttggag 15091
>emb|AL606751.5|AL606751 Zebrafish DNA sequence from clone XX-173A8 on chromosome 1, complete
sequence [Danio rerio]
Length = 104334
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 ataatatataaaaacaataa 214
||||||||||||||||||||
Sbjct: 87486 ataatatataaaaacaataa 87505
>emb|AL596167.1|AL596167 Listeria innocua Clip11262 complete genome, segment 5/12
Length = 253050
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 237 aaacgttttacttcactttc 256
||||||||||||||||||||
Sbjct: 59917 aaacgttttacttcactttc 59898
>emb|Z82198.2|HS302D9 Human DNA sequence from clone RP1-302D9 on chromosome 22 Contains GSSs,
complete sequence [Homo sapiens]
Length = 145880
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 94066 tataatatataaaaacaata 94047
>gb|S75811.1|S75811 NT-3 {3' region} [mice, mRNA Partial, 329 nt]
Length = 329
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 94 tataatatataaaaacaata 75
>emb|X53257.1|MMNT3 M.musculus NT-3 gene for neurotrophin-3
Length = 1284
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 1048 tataatatataaaaacaata 1029
>gb|M61179.1|RATNT3A Rat neurotrophin-3 gene, complete cds, from 3.2 kb SstI genomic
fragment
Length = 1142
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 958 tataatatataaaaacaata 939
>gb|M61180.1|HUMNT3A Human neurotrophin-3 gene, complete cds, from 1.8 kb HindIII
fragment
Length = 1029
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 980 tataatatataaaaacaata 961
>gb|M37763.1|HUMNT3 Human neurotrophin-3 (NT-3) gene, complete cds
Length = 1020
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 940 tataatatataaaaacaata 921
>gb|M33968.1|RATNT3 Rat neurotrophin-3 (NT-3) gene, complete cds
Length = 1142
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 958 tataatatataaaaacaata 939
>gb|M34643.1|RATHDNFNT Rat neurotrophin-3 (HDNF/NT-3) mRNA, complete cds
Length = 1020
Score = 40.1 bits (20), Expect = 1.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194 tataatatataaaaacaata 213
||||||||||||||||||||
Sbjct: 940 tataatatataaaaacaata 921
>gb|AF063008.1| Caenorhabditis elegans cosmid F25F1, complete sequence
Length = 16325
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 329 aaattttgcaggaaattca 347
|||||||||||||||||||
Sbjct: 1405 aaattttgcaggaaattca 1387
>gb|AE010949.1| Methanosarcina acetivorans str. C2A, section 294 of 534 of the
complete genome
Length = 12608
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 196 taatatataaaaacaataa 214
|||||||||||||||||||
Sbjct: 3967 taatatataaaaacaataa 3985
>gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, complete sequence
Length = 121142
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 174 agaaaaggaaaattttgga 192
|||||||||||||||||||
Sbjct: 65239 agaaaaggaaaattttgga 65221
>gb|AC096634.2| Homo sapiens chromosome 1 clone RP11-66M7, complete sequence
Length = 163926
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 gtcagtctcactaccatct 295
|||||||||||||||||||
Sbjct: 112077 gtcagtctcactaccatct 112095
>gb|AC092839.4| Homo sapiens BAC clone RP11-257N16 from 2, complete sequence
Length = 186464
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197 aatatataaaaacaataat 215
|||||||||||||||||||
Sbjct: 27539 aatatataaaaacaataat 27557
>gb|AC019235.6| Homo sapiens BAC clone RP11-665C14 from 4, complete sequence
Length = 196680
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 241 gttttacttcactttccaa 259
|||||||||||||||||||
Sbjct: 158715 gttttacttcactttccaa 158697
>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence
Length = 128535
Score = 38.2 bits (19), Expect = 6.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 192 agtataatatataaaaacaataa 214
|||||||| ||||||||||||||
Sbjct: 118750 agtataatttataaaaacaataa 118728
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 864 gcgtggtcgcggccgaggt 846
>gb|AE002812.2|AE002812 Drosophila melanogaster genomic scaffold 142000013385951, complete
sequence
Length = 10764
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197 aatatataaaaacaataat 215
|||||||||||||||||||
Sbjct: 10432 aatatataaaaacaataat 10450
>gb|AC012072.2|AC012072 Homo sapiens BAC clone RP11-425J3 from 2, complete sequence
Length = 105686
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197 aatatataaaaacaataat 215
|||||||||||||||||||
Sbjct: 99731 aatatataaaaacaataat 99749
>emb|AL645727.15| Mouse DNA sequence from clone RP23-20G7 on chromosome 1, complete
sequence [Mus musculus]
Length = 218189
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 171 ttgagaaaaggaaaatttt 189
|||||||||||||||||||
Sbjct: 66134 ttgagaaaaggaaaatttt 66152
>emb|AL391497.9|AL391497 Human DNA sequence from clone RP11-302M6 on chromosome 1, complete
sequence [Homo sapiens]
Length = 189762
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 193 gtataatatataaaaacaa 211
|||||||||||||||||||
Sbjct: 29462 gtataatatataaaaacaa 29444
>emb|AL645821.1|AL645821 Human DNA sequence from clone RP3-465G10 on chromosome Xq21.1, complete
sequence [Homo sapiens]
Length = 84163
Score = 38.2 bits (19), Expect = 6.4
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 201 tataaaaacaataatgctagacctacaaaaa 231
||||||| |||| |||||||||||||||||
Sbjct: 57018 tataaaacaaatactgctagacctacaaaaa 57048
>emb|AL031053.1|HS267M20 Human DNA sequence from clone RP1-267M20 on chromosome Xq22.2-22.3.
Contains part of the DIAPH2 gene and a pseudogene, ESTs,
STSs and GSSs, complete sequence [Homo sapiens]
Length = 167943
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 181 gaaaattttggagtataat 199
|||||||||||||||||||
Sbjct: 148191 gaaaattttggagtataat 148173
>gb|AF241728.1|AF241728 Homo sapiens PAC 646N3 chromosome X map Xp11.4, complete sequence
Length = 133508
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197 aatatataaaaacaataat 215
|||||||||||||||||||
Sbjct: 23838 aatatataaaaacaataat 23856
>gb|AF241727.1|AF241727 Homo sapiens chromosome X clone PAC 972B16 map Xp11.4, complete sequence
Length = 155156
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197 aatatataaaaacaataat 215
|||||||||||||||||||
Sbjct: 143193 aatatataaaaacaataat 143211
>gb|AC007880.2|AC007880 Homo sapiens BAC clone RP11-323F11 from 2, complete sequence
Length = 122223
Score = 38.2 bits (19), Expect = 6.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 25 atcctgctgtcctacaaatatct 47
||||||||| |||||||||||||
Sbjct: 112079 atcctgctgacctacaaatatct 112057
>emb|AL121769.4|CNS01DSD Human chromosome 14 DNA sequence BAC R-299L17 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 167344
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30 gctgtcctacaaatatctg 48
|||||||||||||||||||
Sbjct: 40196 gctgtcctacaaatatctg 40214
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 547 gcgtggtcgcggccgaggt 529
>emb|AJ304792.1|HVU304792 Hordeum vulgare bpao1 gene for flavin containing polyamine oxidase,
exons 1-9
Length = 2942
Score = 38.2 bits (19), Expect = 6.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 209 caataatgctagacctacaaaaa 231
|||||||||||||||||| ||||
Sbjct: 97 caataatgctagacctacgaaaa 119
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 529 gcgtggtcgcggccgaggt 511
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 153 gcgtggtcgcggccgaggt 135
>gb|U69958.1|TCU69958 Trypanosoma cruzi cdc2-related protein kinase 3 (tcrk3) gene,
complete cds
Length = 960
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 331 attttgcaggaaattcatc 349
|||||||||||||||||||
Sbjct: 217 attttgcaggaaattcatc 235
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 21 gcgtggtcgcggccgaggt 39
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 57 gcgtggtcgcggccgaggt 75
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 20 gcgtggtcgcggccgaggt 38
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 32 gcgtggtcgcggccgaggt 50
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 421 gcgtggtcgcggccgaggt 403
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 702 gcgtggtcgcggccgaggt 684
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 447 gcgtggtcgcggccgaggt 429
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 302 gcgtggtcgcggccgaggt 284
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>emb|AJ271735.1|HSA271735 Homo sapiens Xq pseudoautosomal region; segment 1/2
Length = 240000
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32 tgtcctacaaatatctgat 50
|||||||||||||||||||
Sbjct: 63378 tgtcctacaaatatctgat 63396
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 3 gcgtggtcgcggccgaggt 21
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 425 gcgtggtcgcggccgaggt 407
>emb|AJ243213.1|HSA243213 Homo sapiens partial 5-HT4 receptor gene, exons 2 to 5
Length = 130985
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 197 aatatataaaaacaataat 215
|||||||||||||||||||
Sbjct: 69031 aatatataaaaacaataat 69013
>emb|Z94801.1|HS465G10B Human DNA sequence from PAC 465G10 on chromosome X contains Menkes
Disease (ATP7A) putative Cu++-transporting P-type ATPase
exons 2 to 21, PGAM-B, ESTs
Length = 74432
Score = 38.2 bits (19), Expect = 6.4
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 201 tataaaaacaataatgctagacctacaaaaa 231
||||||| |||| |||||||||||||||||
Sbjct: 17415 tataaaacaaatactgctagacctacaaaaa 17385
>gb|S57126.1|S57126 dgc1=guanylyl cyclase [Drosophila melanogaster, Canton-S, adult head,
mRNA, 2328 nt]
Length = 2328
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 346 catccaggcacctgtgggc 364
|||||||||||||||||||
Sbjct: 1762 catccaggcacctgtgggc 1744
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 55 gcgtggtcgcggccgaggt 37
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 332 gcgtggtcgcggccgaggt 314
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 6.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 102 gcgtggtcgcggccgaggt 84
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,328,173
Number of Sequences: 1217082
Number of extensions: 1328173
Number of successful extensions: 28576
Number of sequences better than 10.0: 64
length of query: 379
length of database: 5,500,847,177
effective HSP length: 20
effective length of query: 359
effective length of database: 5,476,505,537
effective search space: 1966065487783
effective search space used: 1966065487783
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)