The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_D13_T7.seq Fgr-S3_1_D13_T7 LENGTH:525bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_D13 ; CLONELIB: n/a
(525 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK84082.1|AF326781_3 (AF326781) putative resistance pro... 56 2e-07
dbj|BAA76281.1| (AB013448) Pib [Oryza sativa] >gi|4521192|d... 53 1e-06
dbj|BAA85975.1| (AB026839) Pi-b protein [Oryza sativa] 53 1e-06
dbj|BAA93618.1| (AB013451) NBS-LRR type resistance gene [Or... 50 8e-06
gb|AAH24460.1| (BC024460) Similar to hypothetical protein F... 32 4.0
gb|AAL39608.1| (AY069463) LD18949p [Drosophila melanogaster] 31 6.9
ref|XP_107126.1| (XM_107126) hypothetical protein XP_107126... 31 6.9
ref|NP_608836.1| (NM_134992) CG15439 gene product [Drosophi... 31 6.9
ref|NP_195671.1| (NM_120121) putative protein [Arabidopsis ... 30 9.0
>gb|AAK84082.1|AF326781_3 (AF326781) putative resistance protein [Triticum monococcum]
Length = 1169
Score = 55.8 bits (133), Expect = 2e-07
Identities = 33/69 (47%), Positives = 44/69 (62%), Gaps = 1/69 (1%)
Frame = +2
Query: 320 NCYDLCTAFCCHAL-PGIAMRLELYGVLVPRGMRKLKALHTLGVVNIGRRGKLVLQDIKG 496
N D CT+ CC A P I M + GV++P G RKLK+LHT+ V++ G V+Q+I
Sbjct: 891 NQLDACTSLCCGAATPCIMMDKDYGGVVLPGGARKLKSLHTIRGVHVA-YGDAVIQEIGR 949
Query: 497 LARLRKLGV 523
L+ LRKLGV
Sbjct: 950 LSGLRKLGV 958
>dbj|BAA76281.1| (AB013448) Pib [Oryza sativa]
dbj|BAA76282.1| (AB013449) Pib [Oryza sativa]
Length = 1205
Score = 53.1 bits (126), Expect = 1e-06
Identities = 32/66 (48%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Frame = +2
Query: 329 DLCTAFCCHALPGIAMRL-ELYGVLVPRGMRKLKALHTLGVVNIGRRGKLVLQDIKGLAR 505
D T CC P I + E G +VP G+RKLK LHTL +N+G RG +L+DI L
Sbjct: 908 DAWTFACCVKFPSIMTGVHEEEGAMVPSGIRKLKDLHTLRNINVG-RGNAILRDIGMLTG 966
Query: 506 LRKLGV 523
L KLGV
Sbjct: 967 LHKLGV 972
>dbj|BAA85975.1| (AB026839) Pi-b protein [Oryza sativa]
Length = 1251
Score = 53.1 bits (126), Expect = 1e-06
Identities = 32/66 (48%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Frame = +2
Query: 329 DLCTAFCCHALPGIAMRL-ELYGVLVPRGMRKLKALHTLGVVNIGRRGKLVLQDIKGLAR 505
D T CC P I + E G +VP G+RKLK LHTL +N+G RG +L+DI L
Sbjct: 954 DAWTFACCVKFPSIMTGVHEEEGAMVPSGIRKLKDLHTLRNINVG-RGNAILRDIGMLTG 1012
Query: 506 LRKLGV 523
L KLGV
Sbjct: 1013 LHKLGV 1018
>dbj|BAA93618.1| (AB013451) NBS-LRR type resistance gene [Oryza sativa]
Length = 1226
Score = 50.4 bits (119), Expect = 8e-06
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +2
Query: 380 LELYGVLVPRGMRKLKALHTLGVVNIGRRGKLVLQDIKGLARLRKLGV 523
L++ GV VPRG+ +L+++HTL +VNI RGK +L+++K L +L KLGV
Sbjct: 974 LDVCGVKVPRGIGRLRSIHTLSIVNIA-RGKALLKNLKKLTQLCKLGV 1020
>gb|AAH24460.1| (BC024460) Similar to hypothetical protein FLJ13305 [Mus musculus]
gb|AAH26495.1| (BC026495) Unknown (protein for MGC:31583) [Mus musculus]
Length = 448
Score = 31.6 bits (70), Expect = 4.0
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Frame = +3
Query: 30 QMTRNMHNKRKNYPSRTSTKDNKVIRRDD------------PTPS*FAAPLQRPVIRRHE 173
+MT N+R+ S S + K+++RD+ P PS PL ++++ E
Sbjct: 132 EMTVREQNRREKALSARSDLETKLLKRDEDDAECKKKFRANPVPSCVLLPLYEDLVKQSE 191
Query: 174 SRHKELAE-NRLMRMSHMK 227
R K+ E NR ++ +K
Sbjct: 192 ERRKKARERNRAALLASLK 210
>gb|AAL39608.1| (AY069463) LD18949p [Drosophila melanogaster]
Length = 779
Score = 30.8 bits (68), Expect = 6.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 39 RNMHNKRKNYPSRTSTKDNKVIRRDDPTP--S*FAAPLQRPVIR-RHE-SRHKELAENRL 206
RN H R N R K+ + P P + A +QR +++ +H+ +RHKEL
Sbjct: 79 RNYHTLRLNMMQRAREKEALAAEHETPAPHPNPAQARIQRKLLKIQHKYTRHKELKPTPW 138
Query: 207 MRMSHMKKLLTCHA 248
+ M +LLT A
Sbjct: 139 VPTQKMSRLLTTSA 152
>ref|XP_107126.1| (XM_107126) hypothetical protein XP_107126 [Homo sapiens]
Length = 459
Score = 30.8 bits (68), Expect = 6.9
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +2
Query: 146 SATSDPETRV*TQRAGRKPTDEDVSYEETINLPCSLCLVTGLYCLIYCWSWCFPDDTPNC 325
S +DPE R+ G K + +S C VTG C + WC P P+C
Sbjct: 262 SQETDPERRM---HVGAKSFGQPLS-----------CTVTGTICTL----WCLPKWHPHC 303
Query: 326 YD 331
YD
Sbjct: 304 YD 305
>ref|NP_608836.1| (NM_134992) CG15439 gene product [Drosophila melanogaster]
gb|AAF51010.1| (AE003576) CG15439 gene product [Drosophila melanogaster]
Length = 1008
Score = 30.8 bits (68), Expect = 6.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 39 RNMHNKRKNYPSRTSTKDNKVIRRDDPTP--S*FAAPLQRPVIR-RHE-SRHKELAENRL 206
RN H R N R K+ + P P + A +QR +++ +H+ +RHKEL
Sbjct: 308 RNYHTLRLNMMQRAREKEALAAEHETPAPHPNPAQARIQRKLLKIQHKYTRHKELKPTPW 367
Query: 207 MRMSHMKKLLTCHA 248
+ M +LLT A
Sbjct: 368 VPTQKMSRLLTTSA 381
>ref|NP_195671.1| (NM_120121) putative protein [Arabidopsis thaliana]
pir||T09377 hypothetical protein F23K16.240 - Arabidopsis thaliana
emb|CAB44696.1| (AL078620) putative protein [Arabidopsis thaliana]
emb|CAB80624.1| (AL161595) putative protein [Arabidopsis thaliana]
Length = 264
Score = 30.4 bits (67), Expect = 9.0
Identities = 20/48 (41%), Positives = 26/48 (53%), Gaps = 2/48 (4%)
Frame = -1
Query: 510 RNRASPLMSCRTSFPRRPMFTTPSVCRAFSFLIP-LGTSTP-YNSSRI 373
+NR + RT F P+FTTPSV + P LG P +N+SRI
Sbjct: 50 KNRTNVFRVLRTVFRSFPIFTTPSVACKIPVIHPGLGLPDPHHNTSRI 97
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,993,539
Number of Sequences: 922381
Number of extensions: 6131656
Number of successful extensions: 18501
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18482
length of database: 289,601,141
effective HSP length: 112
effective length of database: 186,294,469
effective search space used: 11550257078
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)