The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_D13_T7.seq Fgr-S3_1_D13_T7 LENGTH:525bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_D13 ; CLONELIB: n/a
(525 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL136304.10|AL136304 Human DNA sequence from clone RP1-... 46 0.037
dbj|AB026839.1|AB026839 Oryza sativa gene for Pi-b protein,... 44 0.15
dbj|AB013450.1|AB013450 Oryza sativa DNA, similar sequence ... 44 0.15
dbj|AB013449.2|AB013449 Oryza sativa mRNA for Pib, complete... 44 0.15
dbj|AB013448.1|AB013448 Oryza sativa gene for Pib, complete... 44 0.15
gb|AF276639.2|AF276639 Aeromonas hydrophila outer membrane ... 42 0.58
dbj|AP003334.4| Oryza sativa (japonica cultivar-group) geno... 42 0.58
emb|AL096806.1|CNS00YVC Homo sapiens genomic region contain... 42 0.58
gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome ... 40 2.3
gb|AE003664.1|AE003664 Drosophila melanogaster genomic scaf... 40 2.3
emb|AL591643.4|AL591643 Human DNA sequence from clone CTD-2... 40 2.3
gb|AF222170.1|AF222170 Escherichia coli clone TspE15.G5 neo... 40 2.3
emb|AL445528.16|AL445528 Human DNA sequence from clone RP11... 40 2.3
dbj|AK006816.1|AK006816 Mus musculus adult male testis cDNA... 40 2.3
gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, ... 38 9.0
gb|AC093817.3| Homo sapiens BAC clone RP11-364P22 from 4, c... 38 9.0
gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, co... 38 9.0
gb|AC079313.35| Homo sapiens 12q BAC RP11-753H16 (Roswell P... 38 9.0
gb|AC025775.6| Homo sapiens chromosome 5 clone CTD-2299B9, ... 38 9.0
gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, co... 38 9.0
gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, c... 38 9.0
gb|AC017048.6| Homo sapiens BAC clone RP11-324L17 from 2, c... 38 9.0
gb|AC091199.6| Homo sapiens chromosome 17, clone RP11-697E2... 38 9.0
gb|AC024571.5| Homo sapiens chromosome 5 clone CTD-2220M16,... 38 9.0
gb|AC016601.7| Homo sapiens chromosome 5 clone CTD-2060O10,... 38 9.0
gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) ge... 38 9.0
gb|AC025570.43| Homo sapiens 12 BAC RP11-681G7 (Roswell Par... 38 9.0
gb|AC091982.3| Homo sapiens chromosome 5 clone RP11-54C4, c... 38 9.0
gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-... 38 9.0
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 38 9.0
emb|AL162501.11|AL162501 Human DNA sequence from clone RP11... 38 9.0
emb|AL513016.5|AL513016 Human DNA sequence from clone RP11-... 38 9.0
gb|AC002089.1|AC002089 Human BAC clone CTA-308B22 from 7q22... 38 9.0
emb|AL589699.4|AL589699 Mouse DNA sequence from clone RP23-... 38 9.0
emb|AL590027.10|AL590027 Human DNA sequence from clone RP11... 38 9.0
gb|AE002009.1|AE002009 Deinococcus radiodurans R1 section 1... 38 9.0
emb|AL390197.19|AL390197 Human DNA sequence from clone RP11... 38 9.0
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 9.0
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 38 9.0
emb|AL162431.17|AL162431 Human DNA sequence from clone RP11... 38 9.0
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 38 9.0
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 9.0
emb|AL353674.17|AL353674 Human DNA sequence from clone RP11... 38 9.0
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 9.0
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 38 9.0
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 38 9.0
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 38 9.0
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 38 9.0
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 38 9.0
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 38 9.0
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 38 9.0
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 9.0
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 38 9.0
emb|Z99262.1|SPAC9E9 S.pombe chromosome I cosmid c9E9 38 9.0
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 38 9.0
dbj|AK014565.1|AK014565 Mus musculus 0 day neonate skin cDN... 38 9.0
dbj|AK013815.1|AK013815 Mus musculus adult male hippocampus... 38 9.0
dbj|AP003351.2|AP003351 Homo sapiens genomic DNA, chromosom... 38 9.0
emb|X80503.1|GGBGST G.gallus mRNA for Gal beta 1,3 GalNAc -... 38 9.0
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 38 9.0
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 9.0
>emb|AL136304.10|AL136304 Human DNA sequence from clone RP1-20C7 on chromosome 6p12.3-21.2,
complete sequence [Homo sapiens]
Length = 65612
Score = 46.1 bits (23), Expect = 0.037
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 320 aactgctatgatttatgcactgccttt 346
|||||||||||||||| ||||||||||
Sbjct: 9377 aactgctatgatttatccactgccttt 9403
>dbj|AB026839.1|AB026839 Oryza sativa gene for Pi-b protein, complete cds
Length = 7295
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 401 gtgccaagagggatgaggaaactgaaagccctgcacacacta 442
|||||||| ||||| || |||||||||| | |||||||||||
Sbjct: 5758 gtgccaagtgggattagaaaactgaaagacttgcacacacta 5799
>dbj|AB013450.1|AB013450 Oryza sativa DNA, similar sequence to Pib gene
Length = 9827
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 401 gtgccaagagggatgaggaaactgaaagccctgcacacacta 442
|||||||| ||||| || |||||||||| | |||||||||||
Sbjct: 8654 gtgccaagtgggattagaaaactgaaagacttgcacacacta 8695
>dbj|AB013449.2|AB013449 Oryza sativa mRNA for Pib, complete cds
Length = 4288
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 401 gtgccaagagggatgaggaaactgaaagccctgcacacacta 442
|||||||| ||||| || |||||||||| | |||||||||||
Sbjct: 3241 gtgccaagtgggattagaaaactgaaagacttgcacacacta 3282
>dbj|AB013448.1|AB013448 Oryza sativa gene for Pib, complete cds
Length = 10322
Score = 44.1 bits (22), Expect = 0.15
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 401 gtgccaagagggatgaggaaactgaaagccctgcacacacta 442
|||||||| ||||| || |||||||||| | |||||||||||
Sbjct: 8155 gtgccaagtgggattagaaaactgaaagacttgcacacacta 8196
>gb|AF276639.2|AF276639 Aeromonas hydrophila outer membrane protein (ompTS) gene, complete
cds
Length = 1068
Score = 42.1 bits (21), Expect = 0.58
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 286 ttgttggtcttggtgttttcc 306
|||||||||||||||||||||
Sbjct: 695 ttgttggtcttggtgttttcc 675
>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1114B07
Length = 148060
Score = 42.1 bits (21), Expect = 0.58
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 42 aatatgcataacaaaagaaag 62
|||||||||||||||||||||
Sbjct: 134182 aatatgcataacaaaagaaag 134162
>emb|AL096806.1|CNS00YVC Homo sapiens genomic region containing hypervariable minisatellites
chromosome 10[10q26.3] of Homo sapiens
Length = 28712
Score = 42.1 bits (21), Expect = 0.58
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 416 aggaaactgaaagccctgcacacac 440
||||||||||| |||||||||||||
Sbjct: 23056 aggaaactgaaggccctgcacacac 23032
>gb|AC009252.9|AC009252 Drosophila melanogaster, chromosome 2L, region 38A-38A, BAC clone
BACR22E16, complete sequence
Length = 164361
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ggtcgcggccgaggtcgagg 24
||||||||||||||||||||
Sbjct: 56442 ggtcgcggccgaggtcgagg 56461
>gb|AE003664.1|AE003664 Drosophila melanogaster genomic scaffold 142000013386055 section 57 of
63, complete sequence
Length = 266340
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5 ggtcgcggccgaggtcgagg 24
||||||||||||||||||||
Sbjct: 237928 ggtcgcggccgaggtcgagg 237947
>emb|AL591643.4|AL591643 Human DNA sequence from clone CTD-2076M15 on chromosome Xq23-24,
complete sequence [Homo sapiens]
Length = 61143
Score = 40.1 bits (20), Expect = 2.3
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 312 atactccaaactgctatgatttat 335
||||||||||||||| ||||||||
Sbjct: 52377 atactccaaactgctttgatttat 52400
>gb|AF222170.1|AF222170 Escherichia coli clone TspE15.G5 neonatal meningitis
strain-specific DNA sequence
Length = 409
Score = 40.1 bits (20), Expect = 2.3
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 343 cttttgctgccatgccttgcctgg 366
|||| |||||||||||||||||||
Sbjct: 324 ctttcgctgccatgccttgcctgg 301
>emb|AL445528.16|AL445528 Human DNA sequence from clone RP11-419N10 on chromosome 1, complete
sequence [Homo sapiens]
Length = 195274
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 180 cacaaagagctggcagaaaa 199
||||||||||||||||||||
Sbjct: 19367 cacaaagagctggcagaaaa 19386
>dbj|AK006816.1|AK006816 Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:1700056N10:unclassifiable, full insert
sequence
Length = 1044
Score = 40.1 bits (20), Expect = 2.3
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 345 tttgctgccatgccttgcct 364
||||||||||||||||||||
Sbjct: 922 tttgctgccatgccttgcct 903
>gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, complete sequence
Length = 158605
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 272 tattgtttaatttattgtt 290
|||||||||||||||||||
Sbjct: 10983 tattgtttaatttattgtt 10965
>gb|AC093817.3| Homo sapiens BAC clone RP11-364P22 from 4, complete sequence
Length = 183186
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 317 ccaaactgctatgatttat 335
|||||||||||||||||||
Sbjct: 110414 ccaaactgctatgatttat 110432
>gb|AC109636.3| Homo sapiens BAC clone RP11-19D21 from 4, complete sequence
Length = 71715
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 291 ggtcttggtgttttcctgatgat 313
||||||||||||||| |||||||
Sbjct: 57476 ggtcttggtgttttcttgatgat 57498
>gb|AC079313.35| Homo sapiens 12q BAC RP11-753H16 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 160232
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 236 aacttgccatgctctttgt 254
|||||||||||||||||||
Sbjct: 145106 aacttgccatgctctttgt 145088
>gb|AC025775.6| Homo sapiens chromosome 5 clone CTD-2299B9, complete sequence
Length = 95782
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 233 attaacttgccatgctctt 251
|||||||||||||||||||
Sbjct: 26635 attaacttgccatgctctt 26617
>gb|AC104596.4| Homo sapiens BAC clone RP11-54P19 from 4, complete sequence
Length = 168591
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 267 ggttgtattgtttaattta 285
|||||||||||||||||||
Sbjct: 1163 ggttgtattgtttaattta 1181
>gb|AC093391.5| Homo sapiens BAC clone RP11-798L22 from 2, complete sequence
Length = 121496
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 86 caaagacaacaaagtcatt 104
|||||||||||||||||||
Sbjct: 8508 caaagacaacaaagtcatt 8526
>gb|AC017048.6| Homo sapiens BAC clone RP11-324L17 from 2, complete sequence
Length = 186373
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gatgaggaaactgaaagcc 430
|||||||||||||||||||
Sbjct: 20569 gatgaggaaactgaaagcc 20551
>gb|AC091199.6| Homo sapiens chromosome 17, clone RP11-697E22, complete sequence
Length = 189572
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 48 cataacaaaagaaagaact 66
|||||||||||||||||||
Sbjct: 127643 cataacaaaagaaagaact 127625
>gb|AC024571.5| Homo sapiens chromosome 5 clone CTD-2220M16, complete sequence
Length = 109134
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 272 tattgtttaatttattgtt 290
|||||||||||||||||||
Sbjct: 42507 tattgtttaatttattgtt 42525
>gb|AC016601.7| Homo sapiens chromosome 5 clone CTD-2060O10, complete sequence
Length = 145264
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 272 tattgtttaatttattgtt 290
|||||||||||||||||||
Sbjct: 138175 tattgtttaatttattgtt 138193
>gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) gene, partial cds; putative
chromosome condensation factor (CCF), putative resistance
protein (RGA-2), putative resistance protein (RGA2) and
putative nodulin-like-like protein (NLL) gene, complete
cds; and retrotransp>
Length = 211009
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 416 aggaaactgaaagccctgcacac 438
|||||||||||| ||||||||||
Sbjct: 26901 aggaaactgaaatccctgcacac 26879
>gb|AC025570.43| Homo sapiens 12 BAC RP11-681G7 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 64110
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 236 aacttgccatgctctttgt 254
|||||||||||||||||||
Sbjct: 46976 aacttgccatgctctttgt 46958
>gb|AC091982.3| Homo sapiens chromosome 5 clone RP11-54C4, complete sequence
Length = 170368
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 273 attgtttaatttattgttg 291
|||||||||||||||||||
Sbjct: 62821 attgtttaatttattgttg 62839
>gb|AC026440.4|AC026440 Homo sapiens chromosome 5 clone CTD-2269F5, complete sequence
Length = 103115
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 272 tattgtttaatttattgtt 290
|||||||||||||||||||
Sbjct: 20261 tattgtttaatttattgtt 20279
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 864 gcgtggtcgcggccgaggt 846
>emb|AL162501.11|AL162501 Human DNA sequence from clone RP11-138L21 on chromosome 9, complete
sequence [Homo sapiens]
Length = 118564
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 270 tgtattgtttaatttattg 288
|||||||||||||||||||
Sbjct: 42227 tgtattgtttaatttattg 42209
>emb|AL513016.5|AL513016 Human DNA sequence from clone RP11-474O21 on chromosome 1, complete
sequence [Homo sapiens]
Length = 150720
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 15 gaggtcgaggatgaccaaatgac 37
|||| ||||||||||||||||||
Sbjct: 4316 gaggccgaggatgaccaaatgac 4294
>gb|AC002089.1|AC002089 Human BAC clone CTA-308B22 from 7q22-q31, complete sequence [Homo
sapiens]
Length = 148416
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 412 gatgaggaaactgaaagcc 430
|||||||||||||||||||
Sbjct: 139867 gatgaggaaactgaaagcc 139885
>emb|AL589699.4|AL589699 Mouse DNA sequence from clone RP23-92G13 on chromosome 13, complete
sequence [Mus musculus]
Length = 256608
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 289 ttggtcttggtgttttcctgatg 311
|||||||||||||||||| ||||
Sbjct: 85434 ttggtcttggtgttttccagatg 85412
>emb|AL590027.10|AL590027 Human DNA sequence from clone RP11-338L17 on chromosome 13, complete
sequence [Homo sapiens]
Length = 68556
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 437 acactaggtgttgtgaaca 455
|||||||||||||||||||
Sbjct: 55089 acactaggtgttgtgaaca 55071
>gb|AE002009.1|AE002009 Deinococcus radiodurans R1 section 146 of 229 of the complete
chromosome 1
Length = 15337
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggtcgag 23
|||||||||| ||||||||||||
Sbjct: 2226 gcgtggtcgctgccgaggtcgag 2248
>emb|AL390197.19|AL390197 Human DNA sequence from clone RP11-190F19 on chromosome 10, complete
sequence [Homo sapiens]
Length = 188349
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 294 cttggtgttttcctgatgatact 316
||||||||||||||| |||||||
Sbjct: 180844 cttggtgttttcctgttgatact 180822
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 547 gcgtggtcgcggccgaggt 529
>emb|AL162431.17|AL162431 Human DNA sequence from clone RP11-46A10 on chromosome 1q25.2-31.1,
complete sequence [Homo sapiens]
Length = 139006
Score = 38.2 bits (19), Expect = 9.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 261 tgacagggttgtattgtttaatt 283
|||||||||||| ||||||||||
Sbjct: 119576 tgacagggttgtgttgtttaatt 119554
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 529 gcgtggtcgcggccgaggt 511
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 153 gcgtggtcgcggccgaggt 135
>emb|AL353674.17|AL353674 Human DNA sequence from clone RP11-162O6 on chromosome 6 Contains STSs
and GSSs, complete sequence [Homo sapiens]
Length = 169897
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 380 ctggagttgtatggtgtgc 398
|||||||||||||||||||
Sbjct: 69634 ctggagttgtatggtgtgc 69616
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 21 gcgtggtcgcggccgaggt 39
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 57 gcgtggtcgcggccgaggt 75
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 20 gcgtggtcgcggccgaggt 38
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 32 gcgtggtcgcggccgaggt 50
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 421 gcgtggtcgcggccgaggt 403
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 702 gcgtggtcgcggccgaggt 684
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 447 gcgtggtcgcggccgaggt 429
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 302 gcgtggtcgcggccgaggt 284
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 3 gcgtggtcgcggccgaggt 21
>emb|Z99262.1|SPAC9E9 S.pombe chromosome I cosmid c9E9
Length = 38078
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43 atatgcataacaaaagaaa 61
|||||||||||||||||||
Sbjct: 21834 atatgcataacaaaagaaa 21852
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 425 gcgtggtcgcggccgaggt 407
>dbj|AK014565.1|AK014565 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
library, clone:4632411B12:unclassifiable transcript, full
insert sequence
Length = 2173
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 412 gatgaggaaactgaaagcc 430
|||||||||||||||||||
Sbjct: 1409 gatgaggaaactgaaagcc 1391
>dbj|AK013815.1|AK013815 Mus musculus adult male hippocampus cDNA, RIKEN full-length
enriched library, clone:2900083P10:unclassifiable, full
insert sequence
Length = 1383
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 aaatgacaaggaatatgca 49
|||||||||||||||||||
Sbjct: 13 aaatgacaaggaatatgca 31
>dbj|AP003351.2|AP003351 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12
Length = 176854
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 272 tattgtttaatttattgtt 290
|||||||||||||||||||
Sbjct: 103816 tattgtttaatttattgtt 103834
>emb|X80503.1|GGBGST G.gallus mRNA for Gal beta 1,3 GalNAc - alpha
2,3-sialyltransferase
Length = 1838
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 181 acaaagagctggcagaaaa 199
|||||||||||||||||||
Sbjct: 721 acaaagagctggcagaaaa 739
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 55 gcgtggtcgcggccgaggt 37
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 332 gcgtggtcgcggccgaggt 314
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 9.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 102 gcgtggtcgcggccgaggt 84
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,740,918
Number of Sequences: 1217082
Number of extensions: 1740918
Number of successful extensions: 40251
Number of sequences better than 10.0: 68
length of query: 525
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 504
effective length of database: 5,475,288,455
effective search space: 2759545381320
effective search space used: 2759545381320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)