The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_D20_T7.seq Fgr-S3_1_D20_T7 LENGTH:406bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_D20 ; CLONELIB: n/a
(406 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB94048.1| (AF016494) procollagen C-proteinase enhancer... 31 2.7
dbj|BAB24382.1| (AK006048) evidence:NAS~hypothetical protei... 30 3.5
dbj|BAA85795.2| (AB026456) similar to AraC/XylS [Xanthomona... 30 4.6
dbj|BAA85799.2| (AB026460) similar to AraC/XylS [Xanthomona... 30 4.6
dbj|BAA85811.2| (AB026472) similar to AraC/XylS [Xanthomona... 30 4.6
dbj|BAA85807.2| (AB026468) similar to AraC/XylS [Xanthomona... 30 4.6
dbj|BAA85794.2| (AB026455) similar to AraC/XylS [Xanthomona... 30 4.6
dbj|BAA85812.2| (AB026473) similar to AraC/XylS [Xanthomona... 30 4.6
ref|NP_501048.1| (NM_068647) C17H12.8.p [Caenorhabditis ele... 30 6.0
dbj|BAA85797.2| (AB026458) similar to AraC/XylS [Xanthomona... 30 6.0
emb|CAA55780.1| (X79156) hrp [Xanthomonas campestris] 30 6.0
dbj|BAA85809.2| (AB026470) similar to AraC/XylS [Xanthomona... 30 6.0
dbj|BAA85796.2| (AB026457) similar to AraC/XylS [Xanthomona... 30 6.0
dbj|BAA85813.2| (AB026474) similar to AraC/XylS [Xanthomona... 30 6.0
dbj|BAA85808.2| (AB026469) similar to AraC/XylS [Xanthomona... 30 6.0
dbj|BAA85814.2| (AB026475) similar to AraC/XylS [Xanthomona... 30 6.0
dbj|BAA85806.2| (AB026467) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85801.2| (AB026462) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85805.2| (AB026466) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85802.2| (AB026463) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85789.2| (AB026450) similar to AraC/XylS [Xanthomona... 29 7.8
gb|AAC95119.1| (AF022185) HrpXo [Xanthomonas oryzae pv. ory... 29 7.8
gb|AAC17102.1| (AF063448) regulatory protein HrpX [Xanthomo... 29 7.8
dbj|BAA85784.2| (AB026445) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA32731.1| (AB011449) hypersensitivity-pathogenicity g... 29 7.8
dbj|BAA85785.2| (AB026446) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85793.2| (AB026454) similar to AraC/XylS [Xanthomona... 29 7.8
gb|AAB06558.1| (U45888) HrpXv [Xanthomonas campestris pv. v... 29 7.8
gb|AAL13147.1| (AY048683) mutant HrpX [Xanthomonas oryzae p... 29 7.8
dbj|BAA85798.2| (AB026459) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85791.2| (AB026452) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85792.2| (AB026453) similar to AraC/XylS [Xanthomona... 29 7.8
gb|AAF82582.2| (AF272886) regulatory protein HrpX [Xanthomo... 29 7.8
gb|AAF82581.3| (AF272885) regulatory protein HrpX [Xanthomo... 29 7.8
dbj|BAA85815.2| (AB026476) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85788.2| (AB026449) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85787.2| (AB026448) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85804.2| (AB026465) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85800.2| (AB026461) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85803.2| (AB026464) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85786.2| (AB026447) similar to AraC/XylS [Xanthomona... 29 7.8
dbj|BAA85790.2| (AB026451) similar to AraC/XylS [Xanthomona... 29 7.8
>gb|AAB94048.1| (AF016494) procollagen C-proteinase enhancer protein [Takifugu
rubripes]
Length = 423
Score = 30.8 bits (68), Expect = 2.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 155 TDQDVGLKCDQVLFRTPPR*TRGGWS*RMQTFR 57
TDQ+ G++ RTPP+ RGGW + +T R
Sbjct: 370 TDQERGVELQSKTRRTPPQTRRGGWELQSRTRR 402
>dbj|BAB24382.1| (AK006048) evidence:NAS~hypothetical protein~putative [Mus
musculus]
Length = 983
Score = 30.4 bits (67), Expect = 3.5
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 173 RRTRQSDYRALTLSLSHRSLTVGILYSPWYVRVYLNTMC 289
RR QS YRA +SL + +G +Y Y + Y NT+C
Sbjct: 531 RRLLQSTYRARLVSL----MALGTIYELLYTKEYRNTVC 565
>dbj|BAA85795.2| (AB026456) similar to AraC/XylS [Xanthomonas arboricola pv. pruni]
Length = 149
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 45 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 104
>dbj|BAA85799.2| (AB026460) similar to AraC/XylS [Xanthomonas axonopodis pv.
dieffenbachiae]
Length = 144
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 40 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 99
>dbj|BAA85811.2| (AB026472) similar to AraC/XylS [Xanthomonas campestris pv.
vitians]
Length = 113
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 9 AKYRRAYTYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 68
>dbj|BAA85807.2| (AB026468) similar to AraC/XylS [Xanthomonas campestris pv.
carotae]
Length = 113
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 9 AKYRRAYTYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 68
>dbj|BAA85794.2| (AB026455) similar to AraC/XylS [Xanthomonas arboricola pv. pruni]
Length = 143
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 39 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 98
>dbj|BAA85812.2| (AB026473) similar to AraC/XylS [Xanthomonas campestris pv.
vitians]
Length = 129
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 25 AKYRRAYTYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 84
>ref|NP_501048.1| (NM_068647) C17H12.8.p [Caenorhabditis elegans]
gb|AAD34648.1|AF045642_10 (AF045642) Hypothetical protein C17H12.8 [Caenorhabditis elegans]
Length = 348
Score = 29.6 bits (65), Expect = 6.0
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Frame = +2
Query: 14 RGASYAAVYVYMHIT*KFAFVSSSPLASNAG---VFGKALDHTLIQRLGL--FKEVIVRR 178
R A + Y++ + T KF ++ S ++ V + + +T + LG K ++
Sbjct: 92 RSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERMLNTTVTHLGNPDMKYFMLND 151
Query: 179 TRQSDYRALTLSLSHRSLTVGILYSPWYVRVYLN 280
R + YR +S+ +++ I +S WY ++ N
Sbjct: 152 LRVNSYRTPQTMISNERISLSIAHSGWYSDIFDN 185
>dbj|BAA85797.2| (AB026458) similar to AraC/XylS [Xanthomonas campestris pv.
campestris]
Length = 132
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 28 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQGIR 87
>emb|CAA55780.1| (X79156) hrp [Xanthomonas campestris]
Length = 503
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 399 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQGIR 458
>dbj|BAA85809.2| (AB026470) similar to AraC/XylS [Xanthomonas campestris pv.
incanae]
Length = 127
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 23 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQGIR 82
>dbj|BAA85796.2| (AB026457) similar to AraC/XylS [Xanthomonas campestris pv.
campestris]
Length = 141
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 37 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQGIR 96
>dbj|BAA85813.2| (AB026474) similar to AraC/XylS [Xanthomonas campestris pv.
zantedeschiae]
Length = 120
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 16 AKYRRAYAYMITNAYRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 75
>dbj|BAA85808.2| (AB026469) similar to AraC/XylS [Xanthomonas campestris pv.
incanae]
Length = 123
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 19 AKYRRAYAYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQGIR 78
>dbj|BAA85814.2| (AB026475) similar to AraC/XylS [Xanthomonas campestris pv.
zantedeschiae]
Length = 129
Score = 29.6 bits (65), Expect = 6.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 25 AKYRRAYAYMITNAYRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 84
>dbj|BAA85806.2| (AB026467) similar to AraC/XylS [Xanthomonas campestris pv.
cannabis]
Length = 117
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 13 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 72
>dbj|BAA85801.2| (AB026462) similar to AraC/XylS [Xanthomonas axonopodis pv.
glycines]
Length = 133
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 29 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 88
>dbj|BAA85805.2| (AB026466) similar to AraC/XylS [Xanthomonas axonopodis pv.
alfalfae]
Length = 109
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 5 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 64
>dbj|BAA85802.2| (AB026463) similar to AraC/XylS [Xanthomonas axonopodis pv.
glycines]
Length = 132
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 28 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 87
>dbj|BAA85789.2| (AB026450) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 159
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 55 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 114
>gb|AAC95119.1| (AF022185) HrpXo [Xanthomonas oryzae pv. oryzae]
dbj|BAA85656.1| (AB026433) regulatory protein HrpX [Xanthomonas oryzae pv. oryzae]
dbj|BAA94088.1| (AB040402) regulatory protein HrpX [Xanthomonas oryzae pv. oryzae]
Length = 476
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>gb|AAC17102.1| (AF063448) regulatory protein HrpX [Xanthomonas citri]
Length = 476
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>dbj|BAA85784.2| (AB026445) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 175
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 71 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 130
>dbj|BAA32731.1| (AB011449) hypersensitivity-pathogenicity gene [Xanthomonas citri]
Length = 476
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>dbj|BAA85785.2| (AB026446) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 175
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 71 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 130
>dbj|BAA85793.2| (AB026454) similar to AraC/XylS [Xanthomonas arboricola pv. pruni]
Length = 163
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 59 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 118
>gb|AAB06558.1| (U45888) HrpXv [Xanthomonas campestris pv. vesicatoria]
Length = 476
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>gb|AAL13147.1| (AY048683) mutant HrpX [Xanthomonas oryzae pv. oryzicola]
Length = 476
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>dbj|BAA85798.2| (AB026459) similar to AraC/XylS [Xanthomonas axonopodis pv.
dieffenbachiae]
Length = 141
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 37 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 96
>dbj|BAA85791.2| (AB026452) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 128
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 24 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 83
>dbj|BAA85792.2| (AB026453) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 149
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 45 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 104
>gb|AAF82582.2| (AF272886) regulatory protein HrpX [Xanthomonas oryzae pv. oryzae]
Length = 506
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>gb|AAF82581.3| (AF272885) regulatory protein HrpX [Xanthomonas oryzae pv.
oryzicola]
Length = 506
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 372 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 431
>dbj|BAA85815.2| (AB026476) similar to AraC/XylS [Xanthomonas campestris pv.
zinniae]
Length = 113
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 9 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 68
>dbj|BAA85788.2| (AB026449) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 179
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 75 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 134
>dbj|BAA85787.2| (AB026448) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 120
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 16 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 75
>dbj|BAA85804.2| (AB026465) similar to AraC/XylS [Xanthomonas axonopodis pv.
glycines]
Length = 143
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 39 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 98
>dbj|BAA85800.2| (AB026461) similar to AraC/XylS [Xanthomonas axonopodis pv. citri]
Length = 152
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 48 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 107
>dbj|BAA85803.2| (AB026464) similar to AraC/XylS [Xanthomonas axonopodis pv.
glycines]
Length = 136
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 32 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 91
>dbj|BAA85786.2| (AB026447) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 176
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 72 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 131
>dbj|BAA85790.2| (AB026451) similar to AraC/XylS [Xanthomonas oryzae pv. oryzae]
Length = 158
Score = 29.3 bits (64), Expect = 7.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 20 ASYAAVYVYMHIT*KFAFVSSSPLASNAGVFGKALDHTLIQRLGLFKEVIVRRTRQSDYR 199
A Y Y YM + +S + +A+ GV G+AL GL ++RR R R
Sbjct: 54 AKYRRAYSYMITNAHRSDLSINEVAAQIGVTGRALQQAFKSATGLSPTQVLRRYRMQSIR 113
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,288,047
Number of Sequences: 922381
Number of extensions: 4541627
Number of successful extensions: 8182
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 8069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8181
length of database: 289,601,141
effective HSP length: 110
effective length of database: 188,139,231
effective search space used: 4515341544
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)