The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_E05_T7.seq Fgr-S3_1_E05_T7 LENGTH:293bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_E05 ; CLONELIB: n/a
(293 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_108188.1| (XM_108188) hypothetical protein XP_108188... 59 8e-09
ref|XP_102909.1| (XM_102909) hypothetical protein XP_102909... 59 1e-08
gb|AAK21974.1| (U77931) rRNA promoter binding protein [Ratt... 29 0.38
ref|XP_095722.1| (XM_095722) hypothetical protein XP_095722... 32 1.1
ref|NP_588046.1| (NC_003421) similar to yeast cytoskeleton ... 31 2.4
ref|NP_296362.1| (NC_001264) conserved hypothetical protein... 27 2.7
dbj|BAB63939.1| (AP003430) ORF1 protein [Hepatitis E virus] 31 3.2
ref|NP_045312.1| (NC_001847) virion protein (tegument [Bovi... 31 3.2
ref|NP_173107.1| (NM_101523) arginine/serine-rich protein, ... 30 4.1
sp|Q61180|SCAA_MOUSE Amiloride-sensitive sodium channel alp... 30 5.4
gb|AAF51281.1| (AE003583) CG4267 gene product [Drosophila m... 30 7.1
ref|NP_356253.1| (NC_003063) AGR_L_928p [Agrobacterium tume... 30 7.1
gb|AAA60721.1| (M25555) This CDS feature is included to sho... 30 7.1
gb|AAA60722.1| (M25555) immunoglobulin heavy chain [Mus mus... 30 7.1
dbj|BAA90613.1| (AP001129) hypothetical protein [Oryza sati... 30 7.1
gb|AAA38224.1| (M14638) immunoglobulin gamma-chain [Mus mus... 30 7.1
dbj|BAB33409.1| (AB048529) antibody heavy chain Fd fragment... 29 9.2
sp|P35662|CYL1_BOVIN CYLICIN I (MULTIPLE-BAND POLYPEPTIDE I... 29 9.2
emb|CAA51834.1| (X73455) hair keratin type II intermediate ... 29 9.2
ref|NP_571049.1| (NM_130974) tapasin [Danio rerio] >gi|5231... 29 9.2
ref|NP_116418.1| (NC_002794) T69 [Tupaia herpesvirus] >gi|1... 29 9.2
pir||S34165 keratin, type II - sheep (fragments) 29 9.2
>ref|XP_108188.1| (XM_108188) hypothetical protein XP_108188 [Homo sapiens]
Length = 589
Score = 59.3 bits (142), Expect = 8e-09
Identities = 38/81 (46%), Positives = 46/81 (55%), Gaps = 1/81 (1%)
Frame = +1
Query: 22 YDLA*ELF-LPVDFQGTSRAHQTRQRCRALPAIKP*LRTNRFQGERLLRRKENSAWGPRR 198
YDLA +L LP F+G +R AL P LR NRFQG R L RKENS+ PRR
Sbjct: 61 YDLARKLHRLPRIFKGRRELTGQHKRRAALRGPCPYLRGNRFQGRRPLPRKENSSRDPRR 120
Query: 199 RLHVQLRCRAKPTSRCRNIDR 261
R V+LRCR + S ++R
Sbjct: 121 RFRVRLRCRTRRRSANLRVER 141
>ref|XP_102909.1| (XM_102909) hypothetical protein XP_102909 [Homo sapiens]
Length = 433
Score = 58.5 bits (140), Expect = 1e-08
Identities = 37/74 (50%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 22 YDLA*ELF-LPVDFQGTSRAHQTRQRCRALPAIKP*LRTNRFQGERLLRRKENSAWGPRR 198
YDLA +L LP F+G +R AL P LR NRFQG R L RKENS+ PRR
Sbjct: 54 YDLARKLHRLPRIFKGRRELTGQHKRRAALRGPCPYLRANRFQGRRPLPRKENSSRDPRR 113
Query: 199 RLHVQLRCRAKPTS 240
R V+LRCR + S
Sbjct: 114 RFRVRLRCRTRRRS 127
>gb|AAK21974.1| (U77931) rRNA promoter binding protein [Rattus norvegicus]
Length = 295
Score = 29.3 bits (64), Expect(2) = 0.38
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 49 PVDFQGTSRAHQTRQRCRALPAIKP*LRTNRFQGERLLRRKENSAWG 189
P DFQG +RAH+T R P P R G L +++ + G
Sbjct: 203 PPDFQGPARAHRTPPEPRRFPRHGPLSRGEPIPGRPALHKEKRTLPG 249
Score = 23.5 bits (49), Expect(2) = 0.38
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +2
Query: 164 EEKRTLLGAPAVVSTFSCV----AAQNPHPGAGILTGSP 268
+EKRTL GAPA S V A++ P P I P
Sbjct: 242 KEKRTLPGAPAGFSGIGRVTALDASRRPSPPLRIRRSEP 280
>ref|XP_095722.1| (XM_095722) hypothetical protein XP_095722 [Homo sapiens]
Length = 668
Score = 32.3 bits (72), Expect = 1.1
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = -2
Query: 286 SRPRCERGAGQYSGTWMWVLRGNATERGDDGGGPKQSSLFFL 161
S PR G G V GNAT+ G+ GG P +SSLFF+
Sbjct: 489 SDPRIRSGGDGPRG----VQCGNATDPGEAGGSPGESSLFFV 526
>ref|NP_588046.1| (NC_003421) similar to yeast cytoskeleton control protein Bni1p
[Schizosaccharomyces pombe]
pir||T41643 probable involvement in cytoskeletal organisation - fission yeast
(Schizosaccharomyces pombe)
emb|CAA22841.1| (AL035247) similar to yeast cytoskeleton control protein Bni1p
[Schizosaccharomyces pombe]
Length = 1461
Score = 31.2 bits (69), Expect = 2.4
Identities = 20/70 (28%), Positives = 37/70 (52%)
Frame = +3
Query: 60 SRDVESAPNPAEVPGSSSH*TLAPDKPISG*ETVKKKRELCLGPPPSSPRSVALPRKTHI 239
+ D++ + + +E+ S S L PD +TV+++++L L PP P +V +P
Sbjct: 694 TEDLDESFSGSEISSSPS--PLLPDVS----DTVEEQQKLLLKSPPPPPPAVIVPTPAPA 747
Query: 240 QVPEY*PAPL 269
+P PAP+
Sbjct: 748 PIPVPPPAPI 757
>ref|NP_296362.1| (NC_001264) conserved hypothetical protein [Deinococcus
radiodurans]
Length = 582
Score = 26.6 bits (57), Expect(2) = 2.7
Identities = 15/37 (40%), Positives = 20/37 (53%)
Frame = +3
Query: 174 ELCLGPPPSSPRSVALPRKTHIQVPEY*PAPLSHLGR 284
EL GPP + + + P + +P PAP SHLGR
Sbjct: 127 ELHAGPPHAPGSAESGPDRRRAGLP---PAPASHLGR 160
Score = 23.1 bits (48), Expect(2) = 2.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 8 AARAGTTWRENYFFPWIFKGRRERTKPGRGAGLFQP 115
AA W + F R +PGRGAG +P
Sbjct: 98 AAHLAPAWAAEFLF-------RRGARPGRGAGCPRP 126
>dbj|BAB63939.1| (AP003430) ORF1 protein [Hepatitis E virus]
Length = 1703
Score = 30.8 bits (68), Expect = 3.2
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = +3
Query: 36 RIISSRGFSRDVE----SAPNPAEVPGSSSH*TLAPDKPISG---*ETVKKKRELCLGPP 194
R S+ GFS D +AP PA PGSSS P P+S + ++ ++ P
Sbjct: 703 RTWSTSGFSSDFSPPEAAAPAPAAAPGSSS-----PTPPVSDIWVLPPLSEEPQVGAPPA 757
Query: 195 PSSPRSVALPRKTHIQVP 248
P +P LP T P
Sbjct: 758 PPTPEPARLPCPTKPNTP 775
>ref|NP_045312.1| (NC_001847) virion protein (tegument [Bovine herpesvirus type 1.1
(strain 34)] [Bovine herpesvirus 1]
sp|P36338|UL47_HSVBC 80.7 KD ALPHA TRANS-INDUCING PROTEIN (VP8 TEGUMENT PROTEIN) (VP7
PROTEIN) (107 KD PROTEIN)
pir||JQ1893 80.7K alpha trans-inducing protein - bovine herpesvirus 1 (strain
34)
gb|AAA46064.1| (M84469) tegument protein [Bovine herpesvirus 1]
emb|CAA90922.1| (Z54206) UL47 [Bovine herpesvirus 1]
emb|CAA06087.1| (AJ004801) virion protein (tegument [Bovine herpesvirus type 1.1]
Length = 739
Score = 30.8 bits (68), Expect = 3.2
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 285 RGRGAKGEPVNIPAPGCGFCAATQ 214
RGRGA+ P +P P G AATQ
Sbjct: 389 RGRGARAAPRRLPRPAVGLLAATQ 412
>ref|NP_173107.1| (NM_101523) arginine/serine-rich protein, putative [Arabidopsis
thaliana]
gb|AAF19004.1|AF151366_1 (AF151366) arginine/serine-rich protein [Arabidopsis thaliana]
gb|AAG10821.1|AC011808_9 (AC011808) arginine/serine-rich protein [Arabidopsis thaliana]
Length = 414
Score = 30.4 bits (67), Expect = 4.1
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 51 RGFSRDVESAPNPAEVPGSSSH*TLAPDKPISG*ETVKKKRELCLGPPPSSPR 209
RG S S+P+P +P S + +P +P+ G + PPP PR
Sbjct: 361 RGRSSSYSSSPSPRRIPRKISR-SRSPKRPLRGKRSSSNSSSSSSPPPPPPPR 412
>sp|Q61180|SCAA_MOUSE Amiloride-sensitive sodium channel alpha-subunit (Epithelial Na+
channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated
sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH)
gb|AAD21244.1| (AF112185) epithelial sodium channel alpha subunit [Mus musculus]
Length = 699
Score = 30.0 bits (66), Expect = 5.4
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +3
Query: 66 DVESAPNPAEVPGSSSH*TLAPDKPISG*ETVKKKRELCLGPPPSSPR 209
DV ++P + + L P P+ G K+ E LGP PS PR
Sbjct: 17 DVSNSPKGSMKGNNFKEQDLCPPLPMQGLGKGDKREEQALGPEPSEPR 64
>gb|AAF51281.1| (AE003583) CG4267 gene product [Drosophila melanogaster]
gb|AAM11262.1| (AY094909) RH13166p [Drosophila melanogaster]
Length = 374
Score = 29.6 bits (65), Expect = 7.1
Identities = 19/60 (31%), Positives = 26/60 (42%)
Frame = -2
Query: 280 PRCERGAGQYSGTWMWVLRGNATERGDDGGGPKQSSLFFLTVSHPEIGLSGARV*WLEEP 101
PRCER GTW+ ++ G + PK + + T S P + G R W EP
Sbjct: 308 PRCER---HDDGTWLLLMSDGEFRMGGEPSIPKNGTFYVKTYSKPPYAM-GHR--WQTEP 361
>ref|NP_356253.1| (NC_003063) AGR_L_928p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_534879.1| (NC_003305) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gb|AAK89038.1| (AE008245) AGR_L_928p [Agrobacterium tumefaciens str. C58 (Cereon)]
gb|AAL45195.1| (AE009368) conserved hypothetical protein [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 327
Score = 29.6 bits (65), Expect = 7.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 189 APSRVLFSS*QSLTLKSVCPELGFNGWKSPAPLPGLVRS 73
APS VL + + LK V PE F WK+P + V S
Sbjct: 41 APSAVLAHAVKGGFLKDVAPEAVFKAWKTPDEMRAAVAS 79
>gb|AAA60721.1| (M25555) This CDS feature is included to show the translation of
the corresponding V_segment. Presently translation
qualifiers on V_segment features are illegal [Mus
musculus]
Length = 98
Score = 29.6 bits (65), Expect = 7.1
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +2
Query: 2 RAAARAGTTWRENYFFPWIFKGRRERTKPGRGAGLFQPLNPSSGQTDFRVR 154
R + RA Y+ W+ +G PG+G G +NP +G T+F R
Sbjct: 19 RLSCRASGYTFTGYYMYWVRQG------PGQGLGWIGGINPGNGGTNFNGR 63
>gb|AAA60722.1| (M25555) immunoglobulin heavy chain [Mus musculus]
Length = 102
Score = 29.6 bits (65), Expect = 7.1
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +2
Query: 2 RAAARAGTTWRENYFFPWIFKGRRERTKPGRGAGLFQPLNPSSGQTDFRVR 154
R + RA Y+ W+ +G PG+G G +NP +G T+F R
Sbjct: 19 RLSCRASGYTFTGYYMYWVRQG------PGQGLGWIGGINPGNGGTNFNGR 63
>dbj|BAA90613.1| (AP001129) hypothetical protein [Oryza sativa (japonica
cultivar-group)]
Length = 473
Score = 29.6 bits (65), Expect = 7.1
Identities = 22/81 (27%), Positives = 30/81 (36%), Gaps = 8/81 (9%)
Frame = -2
Query: 268 RGAGQYSGTWMWVLRGN--------ATERGDDGGGPKQSSLFFLTVSHPEIGLSGARV*W 113
R G++ G WV RG + GDDGGG + ++ L G R
Sbjct: 320 RKRGRFGGGGAWVYRGGNRVEWQGPGDDDGDDGGGDLSGAARARVLARGAERLRGGRRGR 379
Query: 112 LEEPGTSAGFGALSTSLENPR 50
PG + G GA + R
Sbjct: 380 AAGPGDAEGAGAARAATTRAR 400
>gb|AAA38224.1| (M14638) immunoglobulin gamma-chain [Mus musculus]
Length = 114
Score = 29.6 bits (65), Expect = 7.1
Identities = 16/51 (31%), Positives = 24/51 (46%)
Frame = +2
Query: 2 RAAARAGTTWRENYFFPWIFKGRRERTKPGRGAGLFQPLNPSSGQTDFRVR 154
R + RA Y+ W+ +G PG+G G +NP +G T+F R
Sbjct: 35 RLSCRASGYTFTGYYMYWVRQG------PGQGLGWIGGINPGNGGTNFNGR 79
>dbj|BAB33409.1| (AB048529) antibody heavy chain Fd fragment [Mus musculus]
Length = 218
Score = 29.3 bits (64), Expect = 9.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 38 NYFFPWIFKGRRERTKPGRGAGLFQPLNPSSGQTDFRVR 154
NY+ W+ + +PG+G +NPS+G T+F R
Sbjct: 28 NYYLYWV------KQRPGQGLEWIGEINPSNGGTNFNER 60
>sp|P35662|CYL1_BOVIN CYLICIN I (MULTIPLE-BAND POLYPEPTIDE I)
pir||A40713 cylicin I - bovine
emb|CAA80456.1| (Z22779) cylicin [Bos taurus]
Length = 667
Score = 29.3 bits (64), Expect = 9.2
Identities = 19/65 (29%), Positives = 27/65 (41%)
Frame = +3
Query: 30 GVRIISSRGFSRDVESAPNPAEVPGSSSH*TLAPDKPISG*ETVKKKRELCLGPPPSSPR 209
G+++ S R ++ VP S L P +PI VK+ + PPP PR
Sbjct: 594 GIKMPSRRTTFKEKGKKIGTGRVPPSRERPPLPPCEPILPSPRVKRLCRCQMPPPPPKPR 653
Query: 210 SVALP 224
LP
Sbjct: 654 YAPLP 658
>emb|CAA51834.1| (X73455) hair keratin type II intermediate filament [Ovis aries]
Length = 123
Score = 29.3 bits (64), Expect = 9.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 185 GAPAVVSTFSCVAAQNPHPGAGILTGSPF 271
G+ V FSCV+A P PG +T +P+
Sbjct: 4 GSYRAVPAFSCVSACGPRPGRCCITAAPY 32
>ref|NP_571049.1| (NM_130974) tapasin [Danio rerio]
gb|AAD41075.1| (AF137538) tapasin [Danio rerio]
Length = 443
Score = 29.3 bits (64), Expect = 9.2
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Frame = +2
Query: 83 KPGRGAGLFQPLNPSSGQTDFRVRDC*EEKRTLLGAPAVVS------------TFSCVAA 226
KPG G GL P++ R EE +T L PA +S TF C AA
Sbjct: 37 KPGHGGGLSTPMSQEKSLIFIRTEAYSEEIKTELHPPADISSSRVYYVTDPAGTF-CSAA 95
Query: 227 QNPHPGA 247
NP G+
Sbjct: 96 LNPPKGS 102
>ref|NP_116418.1| (NC_002794) T69 [Tupaia herpesvirus]
gb|AAK57113.1| (AF281817) T69 [Tupaia herpesvirus]
Length = 756
Score = 29.3 bits (64), Expect = 9.2
Identities = 12/32 (37%), Positives = 18/32 (55%)
Frame = +3
Query: 183 LGPPPSSPRSVALPRKTHIQVPEY*PAPLSHL 278
LGPPP++P ++ LP + P P P+ L
Sbjct: 643 LGPPPTTPGALPLPATVSLPPPPTAPIPIPQL 674
>pir||S34165 keratin, type II - sheep (fragments)
Length = 346
Score = 29.3 bits (64), Expect = 9.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 185 GAPAVVSTFSCVAAQNPHPGAGILTGSPF 271
G+ V FSCV+A P PG +T +P+
Sbjct: 4 GSYRAVPAFSCVSACGPRPGRCCITAAPY 32
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 198,147,779
Number of Sequences: 922381
Number of extensions: 4729847
Number of successful extensions: 15498
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 14820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15491
length of database: 289,601,141
effective HSP length: 73
effective length of database: 222,267,328
effective search space used: 5334415872
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)