The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_E14_T7.seq Fgr-S3_1_E14_T7 LENGTH:286bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_E14 ; CLONELIB: n/a
(286 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_070152.1| (XM_070152) hypothetical protein XP_070152... 35 0.17
ref|NP_177270.1| (NM_105783) hypothetical protein [Arabidop... 33 0.65
pir||JC5204 60K cysteine-rich outer membrane protein 2 prec... 32 1.1
gb|AAM23539.1| (AE012997) Ferrous ion uptake system protein... 32 1.9
pir||T06413 cathepsin B-like cysteine proteinase (EC 3.4.22... 31 3.2
ref|NP_562963.1| (NC_003366) stage V sporulation protein AC... 29 9.3
>ref|XP_070152.1| (XM_070152) hypothetical protein XP_070152 [Homo sapiens]
Length = 358
Score = 35.0 bits (79), Expect = 0.17
Identities = 22/60 (36%), Positives = 26/60 (42%)
Frame = +1
Query: 4 VPQCDFSVYPCVAGHCPACWY*PQSPCYHPLYICLHHHCLPSDAADLWSCCSSFPSLLHH 183
+PQC S +P H P S C P LHH +P + C S FPS LHH
Sbjct: 217 IPQCP-SPFPSALHHSPVSL--TISQCLSPFPSALHHSPVPLTISQ---CLSPFPSALHH 270
Score = 33.1 bits (74), Expect = 0.65
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = +1
Query: 4 VPQCDFSVYPCVAGHCPACWY*PQSPCYHPLYICLHHHCLPSDAADLWSCCSSFPSLLHH 183
+ QC S +P V H P + PQ P P LHH + + + C S FPS LHH
Sbjct: 197 ISQCP-SPFPSVPHHFPVPFTIPQCPS--PFPSALHHSPV---SLTISQCLSPFPSALHH 250
Score = 33.1 bits (74), Expect = 0.65
Identities = 22/60 (36%), Positives = 27/60 (44%)
Frame = +1
Query: 4 VPQCDFSVYPCVAGHCPACWY*PQSPCYHPLYICLHHHCLPSDAADLWSCCSSFPSLLHH 183
+ QC S +P H P + PQ P P LHH +P + C S FPS LHH
Sbjct: 57 ISQCP-SPFPSAPHHFPVPFTIPQCPS--PFPSALHHFPVPFTISQ---CPSPFPSALHH 110
Score = 32.7 bits (73), Expect = 0.84
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +1
Query: 4 VPQCDFSVYPCVAGHCPACWY*PQSPCYHPLYICLHHHCLPSDAADLWSCCSSFPSLLHH 183
+PQC S +P + H P + S C P LHH + + + C S FPS LHH
Sbjct: 137 IPQCP-SPFPSASHHSPVPF--TISQCPSPFPSTLHHSPV---SLTISQCLSPFPSALHH 190
>ref|NP_177270.1| (NM_105783) hypothetical protein [Arabidopsis thaliana]
gb|AAG51691.1|AC016972_10 (AC016972) hypothetical protein; 49518-51504 [Arabidopsis thaliana]
Length = 485
Score = 33.1 bits (74), Expect = 0.65
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +2
Query: 5 CPNAIFRFTLASLAIVLRVGISHKVHVTIRFTFASTTIACPVMLLTFGVAVLLSLPCFII 184
C + +F+F L SL + +G+S+ ++VT+ + + + +C T +++ + F
Sbjct: 194 CWSLVFKFGLGSLGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEF-- 251
Query: 185 IRLGILGSVMIWEPSW 232
R GI + MI W
Sbjct: 252 FRFGIPSASMICLEWW 267
>pir||JC5204 60K cysteine-rich outer membrane protein 2 precursor -
Chlamydophila psittaci
gb|AAB41143.1| (U41759) outer membrane protein 2 [Chlamydophila caviae]
Length = 558
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/31 (41%), Positives = 15/31 (47%)
Frame = +1
Query: 7 PQCDFSVYPCVAGHCPACWY*PQSPCYHPLY 99
P CD YPC G C + Q PCY +Y
Sbjct: 74 PYCDKEFYPCQDGSCQSSVDTKQEPCYGKMY 104
>gb|AAM23539.1| (AE012997) Ferrous ion uptake system protein FeoB (predicted
GTPase) [Thermoanaerobacter tengcongensis]
Length = 656
Score = 31.6 bits (70), Expect = 1.9
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +2
Query: 41 LAIVLRVGISHK-VHVTIRFTFASTT----IACPVMLLTFGVAVLLSLPCFIIIRLGILG 205
+ IVL GI K + + + T A TT I P ++ FG+ +L PC I + L
Sbjct: 566 VGIVLIFGILRKELTLIMLLTLAGTTQVSQILTPKQMIVFGIVTMLYFPC--IATIAALK 623
Query: 206 SVMIWEPSW 232
+ W+ +W
Sbjct: 624 KTIGWKKTW 632
>pir||T06413 cathepsin B-like cysteine proteinase (EC 3.4.22.-) - wheat
(fragment)
emb|CAA46810.1| (X66012) cathepsin B [Triticum aestivum]
Length = 305
Score = 30.8 bits (68), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (50%), Gaps = 1/39 (2%)
Frame = +1
Query: 43 GHCPACWY*PQSPCYHPLYICLHHHC-LPSDAADLWSCC 156
GHC +CW C + C+HH+ + A DL +CC
Sbjct: 80 GHCGSCWAFGAVECLQDRF-CIHHNMNITLSANDLVACC 117
>ref|NP_562963.1| (NC_003366) stage V sporulation protein AC [Clostridium
perfringens]
dbj|BAB81753.1| (AP003192) stage V sporulation protein AC [Clostridium perfringens]
Length = 155
Score = 29.3 bits (64), Expect = 9.3
Identities = 12/31 (38%), Positives = 23/31 (73%)
Frame = +2
Query: 113 TIACPVMLLTFGVAVLLSLPCFIIIRLGILG 205
TIA PV++ G +V++ L ++++R+GI+G
Sbjct: 125 TIAGPVLVYGTGTSVIVGLIYYLLLRVGIVG 155
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,239,888
Number of Sequences: 922381
Number of extensions: 2789076
Number of successful extensions: 9786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9780
length of database: 289,601,141
effective HSP length: 70
effective length of database: 225,034,471
effective search space used: 5400827304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)