The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F03_T7.seq Fgr-S3_1_F03_T7 LENGTH:338bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F03 ; CLONELIB: n/a
(338 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_458524.1| (NC_003198) putative membrane protein [Sal... 30 5.1
ref|NP_415136.1| (NC_000913) putative transcriptional regul... 30 6.6
ref|NP_053237.1| (NC_002146) pXO2-83 [Bacillus anthracis] >... 29 8.6
sp|O17446|TY3H_SCHMA TYROSINE 3-MONOOXYGENASE (TYROSINE 3-H... 29 8.6
>ref|NP_458524.1| (NC_003198) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
ref|NP_463091.1| (NC_003197) putative inner membrane protein [Salmonella typhimurium
LT2]
gb|AAB80738.1| (AF020807) Mig-7 [Salmonella typhimurium]
gb|AAL23050.1| (AE008897) putative inner membrane protein [Salmonella typhimurium
LT2]
emb|CAD09210.1| (AL627282) putative membrane protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 136
Score = 30.0 bits (66), Expect = 5.1
Identities = 14/39 (35%), Positives = 22/39 (55%)
Frame = +2
Query: 158 LTQNINNFFIQTLNLVILFLLEKEFVHFPTQLDSPSNSS 274
+ QN+ N + TL L+++ L KE VH L +P +S
Sbjct: 15 ILQNVLNLGLLTLGLILVVFLGKETVHLADALFAPEQAS 53
>ref|NP_415136.1| (NC_000913) putative transcriptional regulator LYSR-type
[Escherichia coli K12]
sp|P77746|YBDO_ECOLI Hypothetical transcriptional regulator ybdO
pir||A64794 ybdO protein - Escherichia coli
gb|AAB40804.1| (U82598) YbeF homolog [Escherichia coli]
gb|AAC73704.1| (AE000166) putative transcriptional regulator LYSR-type
[Escherichia coli K12]
dbj|BAA35233.1| (D90701) Hypothetical transcriptional regulator in lipA-lipB
intergenic region (orf2). [Escherichia coli]
Length = 300
Score = 29.6 bits (65), Expect = 6.6
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +2
Query: 188 QTLNLVILFLLEKEFVHFPTQLDSPSNSSGALSCGRNNLMLQQTC 322
QT+N+V L+K F+ + QL S SN+S + C R + ++ C
Sbjct: 86 QTINIVNKSELKKNFIIYGPQLISCSNNSMLIRCLRQDSSVEIEC 130
>ref|NP_053237.1| (NC_002146) pXO2-83 [Bacillus anthracis]
sp|Q9RMV2|YQ83_BACAN Hypothetical protein pXO2-83
gb|AAF13687.1|AF188935_85 (AF188935) pXO2-83 [Bacillus anthracis]
gb|AAM26263.1| (AE011191) hypothetical protein, (pXO2-83) [Bacillus anthracis
A2012]
Length = 142
Score = 29.3 bits (64), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (56%)
Frame = -3
Query: 264 EGESNWVGKCTNSFSNKKRITKFRVWMK 181
E NW+ + F+ K RIT+F +W K
Sbjct: 58 EENENWILEAVIDFAKKYRITEFELWKK 85
>sp|O17446|TY3H_SCHMA TYROSINE 3-MONOOXYGENASE (TYROSINE 3-HYDROXYLASE) (TH)
gb|AAC62256.1| (AF030336) tyrosine hydroxylase [Schistosoma mansoni]
Length = 465
Score = 29.3 bits (64), Expect = 8.6
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +2
Query: 164 QNINNFFIQTLNLVILFLLEKE--FVHF---PTQLDSPSNSSGALSC 289
Q+ N F+IQTL+ ++ ++++K+ VHF PT S +N SC
Sbjct: 45 QSNNQFYIQTLHEILKYIIDKKLNLVHFETRPTLTLSNANRDVQYSC 91
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,966,109
Number of Sequences: 922381
Number of extensions: 3648065
Number of successful extensions: 8563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8563
length of database: 289,601,141
effective HSP length: 88
effective length of database: 208,431,613
effective search space used: 5002358712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)