The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F10_T7.seq Fgr-S3_1_F10_T7 LENGTH:405bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F10 ; CLONELIB: n/a
(405 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM14695.1|AC097446_24 (AC097446) Putative polyprotein [... 48 2e-05
gb|AAL86497.1|AC099040_1 (AC099040) putative polyprotein [O... 48 2e-05
gb|AAK92604.1|AC078944_15 (AC078944) Putative retroelement ... 47 3e-05
gb|AAL31081.1|AC091749_10 (AC091749) putative polyprotein [... 47 3e-05
gb|AAL78097.1|AC093568_7 (AC093568) Putative polyprotein [O... 47 4e-05
gb|AAM14672.1|AC097446_1 (AC097446) Putative polyprotein [O... 47 5e-05
dbj|BAB84467.1| (AP003546) putative polyprotein [Oryza sati... 46 8e-05
gb|AAL83344.1|AC074282_11 (AC074282) Putative polyprotein [... 46 8e-05
gb|AAM00956.1|AC021892_20 (AC021892) Putative polyprotein [... 46 8e-05
gb|AAK51581.1|AC022352_17 (AC022352) Putative retroelement ... 45 2e-04
gb|AAM08802.1|AC090486_12 (AC090486) putative retroelement ... 45 2e-04
gb|AAM01156.1|AC113336_8 (AC113336) Putative retroelement [... 45 2e-04
gb|AAL77157.1|AC091732_8 (AC091732) Putative polyprotein [O... 44 2e-04
gb|AAM08845.1|AC113337_9 (AC113337) Putative retroelement [... 44 2e-04
gb|AAM22007.1|AC093178_2 (AC093178) Putative polyprotein [O... 44 3e-04
dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluste... 44 3e-04
gb|AAM14674.1|AC097446_3 (AC097446) Putative polyprotein [O... 44 4e-04
gb|AAK13122.1|AC080019_14 (AC080019) Polyprotein [Oryza sat... 44 4e-04
gb|AAM22721.1|AC092388_5 (AC092388) putative polyprotein [O... 44 4e-04
gb|AAK51585.1|AC022352_21 (AC022352) Putative retroelement ... 44 4e-04
gb|AAK51574.1|AC022352_10 (AC022352) Putative retroelement ... 44 4e-04
gb|AAM14686.1|AC097446_15 (AC097446) Putative polyprotein [... 44 4e-04
dbj|BAB61255.1| (AP003315) putative polyprotein [Oryza sati... 44 4e-04
gb|AAM00937.1|AC021892_1 (AC021892) Putative retroelement [... 44 4e-04
gb|AAK13118.1|AC080019_10 (AC080019) Polyprotein [Oryza sat... 43 7e-04
gb|AAM12313.1|AC091680_14 (AC091680) putative polyprotein [... 43 7e-04
gb|AAD38284.1|AC007789_10 (AC007789) putative polyprotein [... 42 9e-04
gb|AAM01167.1|AC113336_19 (AC113336) Hypothetical protein w... 42 9e-04
gb|AAM00970.1|AC021892_34 (AC021892) Putative retroelement ... 42 9e-04
gb|AAM01019.1|AC090488_19 (AC090488) Putative retroelement ... 42 9e-04
gb|AAL75746.1|AC091724_19 (AC091724) Putative polyprotein [... 42 0.001
dbj|BAB63637.1| (AP003263) putative polyprotein [Oryza sati... 42 0.001
gb|AAL69429.1|AC098565_11 (AC098565) Putative polyprotein [... 42 0.001
gb|AAM14693.1|AC097446_22 (AC097446) Putative polyprotein [... 41 0.002
gb|AAM01095.1|AC092748_33 (AC092748) Putative retroelement ... 41 0.002
gb|AAK13116.1|AC080019_8 (AC080019) polyprotein [Oryza sati... 41 0.003
gb|AAM12303.1|AC091680_4 (AC091680) putative polyprotein [O... 41 0.003
gb|AAL77161.1|AC091732_12 (AC091732) Putative polyprotein [... 41 0.003
gb|AAM01053.1|AC091735_26 (AC091735) Putative retroelement ... 40 0.003
gb|AAK52162.1|AC084831_16 (AC084831) putative polyprotein [... 40 0.003
gb|AAK13123.1|AC080019_15 (AC080019) Similar to Transposon ... 40 0.003
gb|AAK52160.1|AC084831_14 (AC084831) putative polyprotein [... 40 0.003
gb|AAM01169.1|AC113336_21 (AC113336) Putative retroelement ... 40 0.004
gb|AAM01163.1|AC113336_15 (AC113336) Putative retroelement ... 40 0.004
gb|AAM01143.1|AC108884_25 (AC108884) Putative retroelement ... 40 0.004
gb|AAK00448.1|AC060755_18 (AC060755) putative gypsy-type re... 40 0.004
gb|AAL78107.1|AC093568_17 (AC093568) Putative polyprotein [... 40 0.004
gb|AAK92650.1|AC079634_11 (AC079634) Putative retroelement ... 40 0.004
gb|AAM01160.1|AC113336_12 (AC113336) Putative retroelement ... 40 0.004
gb|AAL59229.1|AF448416_9 (AF448416) gag-pol [Zea mays] 40 0.006
dbj|BAB61226.1| (AP003257) putative polyprotein [Oryza sati... 39 0.008
gb|AAK92543.1|AC051624_1 (AC051624) Putative retroelement [... 39 0.008
gb|AAK52169.1|AC084831_23 (AC084831) putative polyprotein [... 39 0.008
gb|AAL69439.1|AC098565_21 (AC098565) Putative polyprotein [... 39 0.010
gb|AAK92560.1|AC051624_18 (AC051624) Putative retroelement ... 39 0.010
gb|AAM08795.1|AC090486_5 (AC090486) Putative retroelement [... 39 0.010
gb|AAK92588.1|AC074354_22 (AC074354) Putative retroelement ... 39 0.010
dbj|BAB86165.1| (AP003537) putative polyprotein [Oryza sati... 39 0.010
gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sati... 39 0.010
dbj|BAB63638.1| (AP003263) putative polyprotein [Oryza sati... 39 0.010
dbj|BAB64173.1| (AP003254) putative polyprotein [Oryza sati... 38 0.017
gb|AAK92680.1|AC090714_13 (AC090714) putative polyprotein [... 38 0.017
dbj|BAB85443.1| (AP004031) similar to polyprotein [Oryza sa... 38 0.022
dbj|BAB90703.1| (AP004232) putative Sorghum bicolor 22 kDa ... 38 0.022
dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kD... 38 0.022
gb|AAL31078.1|AC091749_7 (AC091749) putative polyprotein [O... 38 0.022
dbj|BAB62635.1| (AP003610) putative polyprotein [Oryza sati... 38 0.022
gb|AAL86492.1|AC077693_31 (AC077693) putative polyprotein [... 38 0.022
dbj|BAA81778.1| (AP000364) Similar to Transposon MAGGY gag ... 38 0.022
gb|AAL83634.1|AC093017_18 (AC093017) putative polyprotein [... 38 0.022
gb|AAK92672.1|AC090714_5 (AC090714) putative polyprotein [O... 37 0.029
gb|AAF18643.1|AC006228_14 (AC006228) F5J5.14 [Arabidopsis t... 37 0.037
ref|NP_174845.1| (NM_103309) lectin receptor kinase, putati... 37 0.037
ref|NP_174642.1| (NM_103102) putative gag-pol polyprotein [... 37 0.037
gb|AAL75747.1|AC091724_20 (AC091724) Putative polyprotein [... 37 0.049
gb|AAL69435.1|AC098565_17 (AC098565) Putative polyprotein [... 36 0.083
gb|AAF79483.1|AC022492_27 (AC022492) F1L3.20 [Arabidopsis t... 35 0.19
gb|AAF97298.1|AC007843_1 (AC007843) Hypothetical protein [A... 35 0.19
dbj|BAB02990.1| (AP000736) retroelement pol polyprotein-lik... 34 0.32
gb|AAD22153.1|AF061282_6 (AF061282) polyprotein [Sorghum bi... 34 0.32
gb|AAK13085.1|AC078839_1 (AC078839) Similar to Sorghum bico... 33 0.54
gb|AAM22635.1|AF434192_2 (AF434192) Gag and Pol [Zea mays] 33 0.71
pir||S02021 micropia polyprotein - fruit fly (Drosophila me... 32 0.92
emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster] 32 0.92
gb|AAM01072.1|AC092748_10 (AC092748) Putative retroelement ... 32 1.2
ref|NP_477156.1| (NM_057808) Clp-P1; Single stranded-bindin... 32 1.2
gb|AAA67954.1| (U26549) zinc finger protein [Drosophila mel... 32 1.2
gb|AAL31683.1|AC092390_4 (AC092390) putative polyprotein [O... 32 1.2
gb|AAF46931.1| (AE003459) CG3800 gene product [Drosophila m... 32 1.6
gb|AAL68216.1| (AY075371) GM14667p [Drosophila melanogaster] 32 1.6
gb|AAC48759.1| (U96448) cleavage and polyadenylation specif... 31 2.1
ref|NP_006684.1| (NM_006693) cleavage and polyadenylation s... 31 2.1
ref|NP_571084.1| (NM_131009) no arches [Danio rerio] >gi|15... 31 2.1
ref|NP_178607.1| (NM_126562) putative retroelement pol poly... 31 2.1
gb|AAH03101.1|AAH03101 (BC003101) Similar to cleavage and p... 31 2.1
emb|CAD13472.1| (AJ421618) helicase [Arabidopsis thaliana] 31 2.1
ref|NP_442301.1| (NC_000911) methionyl-tRNA synthetase [Syn... 31 2.1
pir||S42136 cnjB protein - Tetrahymena thermophila >gi|1617... 31 2.7
sp|P52071|YPH1_METEX Hypothetical protein in phaC 3'region ... 31 2.7
dbj|BAB68043.1| (AP003453) putative copia-type polyprotein ... 30 3.5
ref|XP_093137.1| (XM_093137) hypothetical protein XP_093137... 30 3.5
ref|NP_012252.1| (NC_001141) ATP-dependent permease, member... 30 3.5
emb|CAA86236.1| (Z38113) len: 888, CAI: 0.19 incomplete orf... 30 3.5
emb|CAB90892.1| (AL355753) two component system histidine k... 30 3.5
ref|NP_573450.1| (NM_133187) hypothetical basic protein I-1... 30 4.6
gb|AAK92658.1|AC079634_19 (AC079634) Putative retroelement ... 30 4.6
gb|AAM22012.1|AC093178_7 (AC093178) Putative gag-pol polypr... 30 4.6
gb|AAM08718.1|AC116601_11 (AC116601) Putative gag-pol polyp... 30 4.6
gb|AAK50132.1|AC087797_17 (AC087797) putative gag-pol polyp... 30 4.6
ref|NP_500126.1| (NM_067725) K08D12.3.p [Caenorhabditis ele... 30 4.6
gb|AAF36393.1|AF224725_1 (AF224725) gag polyprotein [Tricho... 30 6.0
ref|NP_014974.1| (NC_001147) Multicopy suppressor of clathr... 30 6.0
ref|NP_178711.1| (NM_126669) putative retroelement integras... 30 6.0
ref|NP_539369.1| (NC_003317) putative phosphohydrolases, Ic... 30 6.0
ref|NP_406533.1| (NC_003143) multidrug efflux protein [Yers... 30 6.0
ref|NP_241726.1| (NC_002570) BH0860~unknown conserved prote... 30 6.0
ref|NP_302072.1| (NC_002677) probable membrane protein [Myc... 30 6.0
gb|AAM09303.1| (AC117070) hypothetical protein [Dictyosteli... 29 7.8
emb|CAB51071.1| (AL096857) hypothetical protein [Homo sapiens] 29 7.8
gb|AAL66760.1|AF464738_11 (AF464738) putative gag protein [... 29 7.8
ref|NP_561498.1| (NC_003366) conserved hypothetical protein... 29 7.8
ref|NP_610338.1| (NM_136494) CG2915 gene product [Drosophil... 29 7.8
dbj|BAA83048.2| (AB029019) KIAA1096 protein [Homo sapiens] 29 7.8
gb|AAL58166.1|AC093181_12 (AC093181) hypothetical protein [... 29 7.8
ref|NP_201197.1| (NM_125788) DNA topoisomerase III [Arabido... 29 7.8
ref|NP_189945.1| (NM_114227) putative protein [Arabidopsis ... 29 7.8
pir||T49414 related to ahmp1 protein [imported] - Neurospor... 29 7.8
gb|AAL31659.1|AC079179_14 (AC079179) Putative polyprotein [... 29 7.8
>gb|AAM14695.1|AC097446_24 (AC097446) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1680
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 507 PAKREQGSKPVVCFNCGDPGHYADKCPKPRHVKVVPAQSNSAVPASKARVNHVAAAEAQD 566
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 567 APDVILGTFL 576
>gb|AAL86497.1|AC099040_1 (AC099040) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1722
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 549 PAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQD 608
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 609 APDVILGTFL 618
>gb|AAK92604.1|AC078944_15 (AC078944) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1571
Score = 47.4 bits (111), Expect = 3e-05
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 578 PAKREHGSKPVVCFNCGDPGHYADKCPKPRRMKVVPVQSNSTAPASKARVNHVAAAEAQD 637
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 638 APDVILGTFL 647
>gb|AAL31081.1|AC091749_10 (AC091749) putative polyprotein [Oryza sativa]
Length = 1416
Score = 47.4 bits (111), Expect = 3e-05
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 268 PAKREHGSKPVVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVPASKARVNHVAAAEAQD 327
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 328 APDVILGTFL 337
>gb|AAL78097.1|AC093568_7 (AC093568) Putative polyprotein [Oryza sativa]
Length = 1473
Score = 47.0 bits (110), Expect = 4e-05
Identities = 23/70 (32%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 300 PAKREQGSKPVVCFNCGDPGHYADKCPKPRRVKVVPVQNNSAVPASKARVNHVAAAEAQD 359
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 360 APDVILGTFL 369
>gb|AAM14672.1|AC097446_1 (AC097446) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1342
Score = 46.6 bits (109), Expect = 5e-05
Identities = 22/70 (31%), Positives = 35/70 (49%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ + CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 272 PAKREQGSKPMVCFNCGDPGHYADKCPKPRRVKVVPAQSNSAVPASKARVNHVAAAEAQD 331
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 332 APDVILGTFL 341
>dbj|BAB84467.1| (AP003546) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1455
Score = 45.8 bits (107), Expect = 8e-05
Identities = 22/69 (31%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 300 PAKREQGNKPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQD 359
Query: 53 QPDAVIGKF 27
PD ++G F
Sbjct: 360 APDVILGMF 368
>gb|AAL83344.1|AC074282_11 (AC074282) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
gb|AAM08733.1|AC116601_26 (AC116601) Putative polyprotein [Oryza sativa]
Length = 1443
Score = 45.8 bits (107), Expect = 8e-05
Identities = 22/69 (31%), Positives = 34/69 (48%), Gaps = 2/69 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 270 PAKREQGSKSVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSTVPASKARVNHVAAAEAQD 329
Query: 53 QPDAVIGKF 27
PD ++G F
Sbjct: 330 APDVILGTF 338
>gb|AAM00956.1|AC021892_20 (AC021892) Putative polyprotein [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1167
Score = 45.8 bits (107), Expect = 8e-05
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C + H+A+ CP+ + P ++ VNHV E +
Sbjct: 41 PAKREQGSKPVVCFNCGEPGHYADKCPKPRRVKVVPTQSNSTVPVSKASVNHVAAAEAQG 100
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 101 APDVILGTFL 110
>gb|AAK51581.1|AC022352_17 (AC022352) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 959
Score = 44.7 bits (104), Expect = 2e-04
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDLS--QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
P TPA ++D+ Q CF C + HFA+ CP+ Q RG+
Sbjct: 568 PPTPAAQSGQVRRDVQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGR 627
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E+V PD ++G FL
Sbjct: 628 VNHVTAEDVLTTPDVIVGTFL 648
>gb|AAM08802.1|AC090486_12 (AC090486) putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1594
Score = 44.7 bits (104), Expect = 2e-04
Identities = 22/70 (31%), Positives = 33/70 (46%), Gaps = 2/70 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAKK+ + CF C H+A+ CP+ + P ++ VNHV E +
Sbjct: 562 PAKKEQGSKPMVCFNCGDPGHYADKCPKPRRVKVVPTQSNSTVPASKAHVNHVAAAEAQG 621
Query: 53 QPDAVIGKFL 24
PD ++G FL
Sbjct: 622 APDVILGTFL 631
>gb|AAM01156.1|AC113336_8 (AC113336) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1784
Score = 44.7 bits (104), Expect = 2e-04
Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDLS--QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
P TPA ++D S Q CF C + HFA+ CP+ Q RG+
Sbjct: 600 PPTPAVQPVQGRRDASGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGR 659
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E+V PD ++G FL
Sbjct: 660 VNHVAAEDVLTTPDVIVGTFL 680
>gb|AAL77157.1|AC091732_8 (AC091732) Putative polyprotein [Oryza sativa]
Length = 1839
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 673 QRLCFNCYEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 732
Query: 32 KFL 24
FL
Sbjct: 733 TFL 735
>gb|AAM08845.1|AC113337_9 (AC113337) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1728
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDLS--QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
PSTP ++D Q CF C + HFA+ CP+ Q RG+
Sbjct: 621 PSTPTVQPGQGRRDAQGPQRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGR 680
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E+V PD ++G FL
Sbjct: 681 VNHVTAEDVLTTPDVIVGTFL 701
>gb|AAM22007.1|AC093178_2 (AC093178) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1229
Score = 43.9 bits (102), Expect = 3e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 656 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGAKDVIRGRVNHVTAEDVLTTPDVIVG 715
Query: 32 KFL 24
FL
Sbjct: 716 TFL 718
>dbj|BAA90795.1| (AP001168) Similar to 22 kDa kafirin cluster; Ty3-Gypsy type
(AF061282) [Oryza sativa (japonica cultivar-group)]
Length = 963
Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/67 (31%), Positives = 33/67 (48%), Gaps = 2/67 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAK++ V CF C H+A+ CP+ + P ++ +VNHV E +D
Sbjct: 300 PAKREQGNKPVVCFNCGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQD 359
Query: 53 QPDAVIG 33
PD ++G
Sbjct: 360 APDVILG 366
>gb|AAM14674.1|AC097446_3 (AC097446) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1433
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E V PD ++G
Sbjct: 338 QRLCFNCYEPGHFADKCPKPRRQQGKAPPRSNNGGNDVIRGRVNHVTAENVLTTPDVIVG 397
Query: 32 KFL 24
FL
Sbjct: 398 TFL 400
>gb|AAK13122.1|AC080019_14 (AC080019) Polyprotein [Oryza sativa] [Oryza sativa (japonica
cultivar-group)]
Length = 2017
Score = 43.5 bits (101), Expect = 4e-04
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDLS--QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
P TP ++D S Q CF C + HFA+ CP+ Q RG+
Sbjct: 892 PPTPTVQPGQGRRDASGPQRLCFNCFEPGHFADKCPKPRHQQGQAPPCSNNGGKDVIRGR 951
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E+V PD ++G FL
Sbjct: 952 VNHVTAEDVLTTPDVIVGTFL 972
>gb|AAM22721.1|AC092388_5 (AC092388) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1784
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 656 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 715
Query: 32 KFL 24
FL
Sbjct: 716 TFL 718
>gb|AAK51585.1|AC022352_21 (AC022352) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1862
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 696 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGRDVIRGRVNHVTAEDVLTTPDVIVG 755
Query: 32 KFL 24
FL
Sbjct: 756 TFL 758
>gb|AAK51574.1|AC022352_10 (AC022352) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1810
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 644 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 703
Query: 32 KFL 24
FL
Sbjct: 704 TFL 706
>gb|AAM14686.1|AC097446_15 (AC097446) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1859
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 752 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 811
Query: 32 KFL 24
FL
Sbjct: 812 TFL 814
>dbj|BAB61255.1| (AP003315) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1500
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 334 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 393
Query: 32 KFL 24
FL
Sbjct: 394 TFL 396
>gb|AAM00937.1|AC021892_1 (AC021892) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1052
Score = 43.5 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 637 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 696
Query: 32 KFL 24
FL
Sbjct: 697 TFL 699
>gb|AAK13118.1|AC080019_10 (AC080019) Polyprotein [Oryza sativa] [Oryza sativa (japonica
cultivar-group)]
Length = 1781
Score = 42.7 bits (99), Expect = 7e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 625 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 684
Query: 32 KFL 24
FL
Sbjct: 685 TFL 687
>gb|AAM12313.1|AC091680_14 (AC091680) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1453
Score = 42.7 bits (99), Expect = 7e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 320 QRLCFNCFEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 379
Query: 32 KFL 24
FL
Sbjct: 380 TFL 382
>gb|AAD38284.1|AC007789_10 (AC007789) putative polyprotein [Oryza sativa]
dbj|BAB18315.1| (AP002865) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB40075.1| (AP003074) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1220
Score = 42.4 bits (98), Expect = 9e-04
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
PS AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 340 PSVQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FVQARVNHASTEE 390
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 391 AQAAPEVVLGTF 402
>gb|AAM01167.1|AC113336_19 (AC113336) Hypothetical protein with similarity to putative
retroelement [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 42.4 bits (98), Expect = 9e-04
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q C+ C + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 645 QRLCYNCFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 704
Query: 32 KFL 24
FL
Sbjct: 705 TFL 707
>gb|AAM00970.1|AC021892_34 (AC021892) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1425
Score = 42.4 bits (98), Expect = 9e-04
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
PS AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 301 PSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEE 351
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 352 AQAAPEVVLGTF 363
>gb|AAM01019.1|AC090488_19 (AC090488) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1475
Score = 42.4 bits (98), Expect = 9e-04
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
PS AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 340 PSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEE 390
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 391 AQAAPEVVLGTF 402
>gb|AAL75746.1|AC091724_19 (AC091724) Putative polyprotein [Oryza sativa]
Length = 1322
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/86 (25%), Positives = 31/86 (35%), Gaps = 25/86 (29%)
Frame = -2
Query: 209 SQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXP------------------------ 102
S V CF+C + H+A CP++
Sbjct: 268 SAVQCFRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTPAAAQSRPSSQASGQGSRASN 327
Query: 101 -FNRGQVNHVNVEEVEDQPDAVIGKF 27
F RG+VNH+ E +D PD V+G F
Sbjct: 328 NFGRGRVNHIQAETAQDAPDVVMGMF 353
>dbj|BAB63637.1| (AP003263) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1572
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/86 (25%), Positives = 31/86 (35%), Gaps = 25/86 (29%)
Frame = -2
Query: 209 SQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXP------------------------ 102
S V CF+C + H+A CP++
Sbjct: 390 SAVQCFRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTPAAAQSRPSSQASGQGSRASN 449
Query: 101 -FNRGQVNHVNVEEVEDQPDAVIGKF 27
F RG+VNH+ E +D PD V+G F
Sbjct: 450 NFGRGRVNHIQAETAQDAPDVVMGMF 475
>gb|AAL69429.1|AC098565_11 (AC098565) Putative polyprotein [Oryza sativa]
Length = 1788
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF C + HF + CP+ Q RG+VNHV E+V PD ++G
Sbjct: 656 QRLCFNCFEPGHFVDKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 715
Query: 32 KFL 24
FL
Sbjct: 716 TFL 718
>gb|AAM14693.1|AC097446_22 (AC097446) Putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1630
Score = 41.2 bits (95), Expect = 0.002
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
P +K+ V CF C H+A+ CP+ + P + +VNHV E ++
Sbjct: 533 PVRKEQGSKPVVCFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQN 592
Query: 53 QPDAVIGKF 27
PD V+G F
Sbjct: 593 APDVVLGTF 601
>gb|AAM01095.1|AC092748_33 (AC092748) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1240
Score = 41.2 bits (95), Expect = 0.002
Identities = 17/57 (29%), Positives = 27/57 (46%)
Frame = -2
Query: 197 CFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
CF C H+A+ CP+++ + +VNHV E ++ PD V+G F
Sbjct: 334 CFNCGHPGHYADKCPKARRVKNAPVQNNSNATALKARVNHVAAAEAQNSPDVVLGTF 390
>gb|AAK13116.1|AC080019_8 (AC080019) polyprotein [Oryza sativa] [Oryza sativa (japonica
cultivar-group)]
Length = 2162
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
P AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 934 PPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEE 984
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 985 AQTAPEVVLGTF 996
>gb|AAM12303.1|AC091680_4 (AC091680) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1658
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 25/87 (28%)
Frame = -2
Query: 212 LSQVTCFKCQKTRHFANGCPES-------------------------QXXXXXXXXXXXX 108
LS V CF+C + H+A CP++
Sbjct: 673 LSAVQCFRCNQMGHYARQCPQNLTNSNSGHTNGSTARTPTPAAAQSRPSTQASGQGSRAS 732
Query: 107 XPFNRGQVNHVNVEEVEDQPDAVIGKF 27
F R +VNH+ E +D PD V+G F
Sbjct: 733 NNFGRDRVNHIQAETAQDAPDVVMGMF 759
>gb|AAL77161.1|AC091732_12 (AC091732) Putative polyprotein [Oryza sativa]
Length = 1731
Score = 40.8 bits (94), Expect = 0.003
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
P AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 550 PPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEE 600
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 601 AQTAPEVVLGTF 612
>gb|AAM01053.1|AC091735_26 (AC091735) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 784
Score = 40.4 bits (93), Expect = 0.003
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDLS--QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
P TPA ++D+ Q CF C + HFA+ P+ Q RG+
Sbjct: 636 PPTPAAQLGQGRRDVQGPQRLCFNCFEPGHFADKYPKPRRQQGQAPPRSNNGGKDVIRGR 695
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E+V PD ++G FL
Sbjct: 696 VNHVTAEDVLTTPDVIVGTFL 716
>gb|AAK52162.1|AC084831_16 (AC084831) putative polyprotein [Oryza sativa]
Length = 1461
Score = 40.4 bits (93), Expect = 0.003
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
P AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 340 PPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEE 390
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 391 AQAAPEVVLGTF 402
>gb|AAK13123.1|AC080019_15 (AC080019) Similar to Transposon MAGGYgagandpolgenehomologues
[Oryza sativa] [Oryza sativa (japonica cultivar-group)]
Length = 2157
Score = 40.4 bits (93), Expect = 0.003
Identities = 19/65 (29%), Positives = 30/65 (45%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDA 42
K+ V CF H+A+ CP+ + P ++ +VNHV E +D PD
Sbjct: 768 KQGSKPVVCFNYGDPGHYADKCPKPRRVKVVPAQNNSAVPASKARVNHVAAAEAQDAPDV 827
Query: 41 VIGKF 27
++G F
Sbjct: 828 ILGTF 832
>gb|AAK52160.1|AC084831_14 (AC084831) putative polyprotein [Oryza sativa]
Length = 1475
Score = 40.4 bits (93), Expect = 0.003
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDLS--QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
P TPA +KD+ Q CF + HFA+ CP+ Q RG+
Sbjct: 321 PPTPAVQPGQGRKDVQGQQRLCFNFFEHGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGR 380
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E+V PD ++G FL
Sbjct: 381 VNHVTAEDVLTTPDVIVGTFL 401
>gb|AAM01169.1|AC113336_21 (AC113336) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1449
Score = 40.0 bits (92), Expect = 0.004
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
Frame = -2
Query: 227 PAKKDLSQ--VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
P +K+ V CF C H+A+ CP+ + P + +VNHV E ++
Sbjct: 276 PVRKEQGSKPVICFNCGDPGHYADKCPKPRHVKNVPVPNNSNVPAPKARVNHVAAAEAQN 335
Query: 53 QPDAVIGKF 27
PD V+G F
Sbjct: 336 APDVVLGTF 344
>gb|AAM01163.1|AC113336_15 (AC113336) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1461
Score = 40.0 bits (92), Expect = 0.004
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -2
Query: 203 VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
V CF C H+A+ CP+ + P + +VNHV E ++ PD V+G F
Sbjct: 298 VICFNCGDPGHYADKCPKPRRVKNAPAPNNFNVPAPKARVNHVAAAEAQNAPDVVLGTF 356
>gb|AAM01143.1|AC108884_25 (AC108884) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1245
Score = 40.0 bits (92), Expect = 0.004
Identities = 23/80 (28%), Positives = 36/80 (44%), Gaps = 10/80 (12%)
Frame = -2
Query: 236 PSTPAKKDLSQV----------TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQ 87
P+ PA+ LS +CF C + HFA+ CP+ + F + +
Sbjct: 137 PTAPAQSGLSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQAR 187
Query: 86 VNHVNVEEVEDQPDAVIGKF 27
VNH + EE + P+ V+G F
Sbjct: 188 VNHASAEEAQAAPEVVLGTF 207
>gb|AAK00448.1|AC060755_18 (AC060755) putative gypsy-type retrotransposon polyprotein [Oryza
sativa]
Length = 762
Score = 40.0 bits (92), Expect = 0.004
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 25/84 (29%)
Frame = -2
Query: 209 SQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXP------------------------ 102
S V CF+C + H+A CP++
Sbjct: 53 SAVQCFRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTPAAAQSRPSSQASGQGSRVSN 112
Query: 101 -FNRGQVNHVNVEEVEDQPDAVIG 33
F RG+VNH+ E +D PD V+G
Sbjct: 113 NFGRGRVNHIQAETAQDAPDVVMG 136
>gb|AAL78107.1|AC093568_17 (AC093568) Putative polyprotein [Oryza sativa]
Length = 1819
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -2
Query: 230 TPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
T AKK+ +CF C + HFA+ CP+ + F + +VNH + EE +
Sbjct: 640 TQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQ 690
Query: 56 DQPDAVIGKF 27
P+ V+G F
Sbjct: 691 AAPEVVLGTF 700
>gb|AAK92650.1|AC079634_11 (AC079634) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1109
Score = 40.0 bits (92), Expect = 0.004
Identities = 22/72 (30%), Positives = 34/72 (46%), Gaps = 2/72 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
PS AKK+ +CF C + H A+ CP+ + F + +VNH + EE
Sbjct: 176 PSAQAKKETGTKPGSCFNCGELGHLADKCPKPRRAGPR---------FVQARVNHASAEE 226
Query: 62 VEDQPDAVIGKF 27
+ P+ V+G F
Sbjct: 227 AQAAPEVVLGTF 238
>gb|AAM01160.1|AC113336_12 (AC113336) Putative retroelement [Oryza sativa (japonica
cultivar-group)]
Length = 1466
Score = 40.0 bits (92), Expect = 0.004
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -2
Query: 203 VTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
V CF C H+A+ CP+ + P + +VNHV E ++ PD V+G F
Sbjct: 318 VICFNCGDPGHYADKCPKPRRVKNAPAPNNFNVPAPKARVNHVAAAEAQNAPDVVLGTF 376
>gb|AAL59229.1|AF448416_9 (AF448416) gag-pol [Zea mays]
Length = 1470
Score = 39.7 bits (91), Expect = 0.006
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 15/73 (20%)
Frame = -2
Query: 197 CFKCQKTRHFANGCP---------------ESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
CFKC + H+AN CP + +RG+VNHV E
Sbjct: 297 CFKCGELGHYANNCPRRNQQTPQKSNNQRNDQNTPARGSAQNKAPQNQSRGRVNHVTAES 356
Query: 62 VEDQPDAVIGKFL 24
V + D V G FL
Sbjct: 357 VPEDADIVYGMFL 369
>dbj|BAB61226.1| (AP003257) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1506
Score = 39.3 bits (90), Expect = 0.008
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = -2
Query: 206 QVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIG 33
Q CF + HFA+ CP+ Q RG+VNHV E+V PD ++G
Sbjct: 340 QRLCFNYFEPGHFADKCPKPRRQQGQAPPRSNNGGKDVIRGRVNHVTAEDVLTTPDVIVG 399
Query: 32 KFL 24
FL
Sbjct: 400 TFL 402
>gb|AAK92543.1|AC051624_1 (AC051624) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1773
Score = 39.3 bits (90), Expect = 0.008
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 610 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQTAPEVVLGTF 658
>gb|AAK52169.1|AC084831_23 (AC084831) putative polyprotein [Oryza sativa]
Length = 1473
Score = 39.3 bits (90), Expect = 0.008
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -2
Query: 227 PAKKD--LSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
PAKK+ + CF C H+A+ CP+ + P ++ +VNHV E +
Sbjct: 554 PAKKEQGIKPGVCFNCGDPGHYADKCPKPRRVKVVPAQSNSTAPASKARVNHVAAAEAQG 613
Query: 53 QPDAVI 36
PD ++
Sbjct: 614 APDVIL 619
>gb|AAL69439.1|AC098565_21 (AC098565) Putative polyprotein [Oryza sativa]
Length = 1181
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 354 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 402
>gb|AAK92560.1|AC051624_18 (AC051624) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1714
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 547 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 595
>gb|AAM08795.1|AC090486_5 (AC090486) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1785
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 618 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 666
>gb|AAK92588.1|AC074354_22 (AC074354) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
gb|AAM01103.1|AC098682_7 (AC098682) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1777
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 610 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 658
>dbj|BAB86165.1| (AP003537) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1521
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 354 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 402
>gb|AAD27547.1|AF111709_1 (AF111709) polyprotein [Oryza sativa subsp. indica] [Oryza sativa
(indica cultivar-group)]
Length = 1521
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 354 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 402
>dbj|BAB63638.1| (AP003263) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1521
Score = 38.9 bits (89), Expect = 0.010
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 200 TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
+CF C + HFA+ CP+ + F + +VNH + EE + P+ V+G F
Sbjct: 354 SCFNCGELGHFADKCPKPRRAGPR---------FIQARVNHASAEEAQAAPEVVLGTF 402
>dbj|BAB64173.1| (AP003254) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB91875.1| (AP003378) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1524
Score = 38.1 bits (87), Expect = 0.017
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K RH C + + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPRHMVGKCSKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>gb|AAK92680.1|AC090714_13 (AC090714) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 413
Score = 38.1 bits (87), Expect = 0.017
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -2
Query: 236 PSTPAKKDLSQV--TCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEE 63
PS AKK+ +CF C + HFA+ CP+ + F + +VNH + EE
Sbjct: 124 PSAQAKKETGTKPGSCFNCGELGHFADKCPKPR---------RAEPRFVQARVNHASAEE 174
Query: 62 VEDQPDAVI 36
+ P+ V+
Sbjct: 175 AQAAPEVVL 183
>dbj|BAB85443.1| (AP004031) similar to polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1524
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>dbj|BAB90703.1| (AP004232) putative Sorghum bicolor 22 kDa kafirin cluster
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>dbj|BAA95869.1| (AP002071) Similar to Sorghum bicolor 22 kDa kafirin cluster;
polyprotein. (AF061282) [Oryza sativa (japonica
cultivar-group)]
Length = 1524
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>gb|AAL31078.1|AC091749_7 (AC091749) putative polyprotein [Oryza sativa]
Length = 1524
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>dbj|BAB62635.1| (AP003610) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB64248.1| (AP003727) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1524
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>gb|AAL86492.1|AC077693_31 (AC077693) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1524
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 345 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 395
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 396 SAPEVILGTF 405
>dbj|BAA81778.1| (AP000364) Similar to Transposon MAGGY gag and pol gene homologues.
(L35053) [Oryza sativa (japonica cultivar-group)]
Length = 1491
Score = 37.7 bits (86), Expect = 0.022
Identities = 23/93 (24%), Positives = 32/93 (33%), Gaps = 23/93 (24%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPE-----------------------SQXXXXXX 126
P+ A + +CF C + HFAN CP +
Sbjct: 463 PNQAATGSVRLGSCFNCGEYGHFANKCPHPNKTPICTGANATAIHGTATPAAGRGLFGTP 522
Query: 125 XXXXXXXPFNRGQVNHVNVEEVEDQPDAVIGKF 27
F RGQVNHV EE ++ ++G F
Sbjct: 523 QTNRTTTGFGRGQVNHVRAEEAQEDQGVLMGMF 555
>gb|AAL83634.1|AC093017_18 (AC093017) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1229
Score = 37.7 bits (86), Expect = 0.022
Identities = 18/70 (25%), Positives = 28/70 (39%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 50 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 100
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 101 SAPEVILGTF 110
>gb|AAK92672.1|AC090714_5 (AC090714) putative polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1302
Score = 37.4 bits (85), Expect = 0.029
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 25/86 (29%)
Frame = -2
Query: 209 SQVTCFKCQKTRHFANGCPESQXXX-------------------------XXXXXXXXXX 105
S V F+C + H+A CP++
Sbjct: 297 SAVQFFRCNQMGHYATQCPQNPTNTNLGHANGSTARTPTPAAAQSRPSSQASGQGSRASN 356
Query: 104 PFNRGQVNHVNVEEVEDQPDAVIGKF 27
F RG+VNH+ E +D PD V+G F
Sbjct: 357 NFGRGRVNHIQAETAQDAPDIVMGMF 382
>gb|AAF18643.1|AC006228_14 (AC006228) F5J5.14 [Arabidopsis thaliana]
Length = 743
Score = 37.0 bits (84), Expect = 0.037
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGCPES 147
+D S+VTC++C K H+A+ CP+S
Sbjct: 241 RDTSKVTCYRCDKLGHYASNCPDS 264
>ref|NP_174845.1| (NM_103309) lectin receptor kinase, putative [Arabidopsis thaliana]
Length = 745
Score = 37.0 bits (84), Expect = 0.037
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGCPES 147
+D S+VTC++C K H+A+ CP+S
Sbjct: 241 RDTSKVTCYRCDKLGHYASNCPDS 264
>ref|NP_174642.1| (NM_103102) putative gag-pol polyprotein [Arabidopsis thaliana]
gb|AAF97281.1|AC010164_3 (AC010164) Hypothetical protein [Arabidopsis thaliana]
gb|AAG52212.1|AC022288_11 (AC022288) putative gag-pol polyprotein; 76173-77576 [Arabidopsis
thaliana]
Length = 467
Score = 37.0 bits (84), Expect = 0.037
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGCPE 150
+DLSQV CF+C K H+A+ CP+
Sbjct: 244 RDLSQVICFRCDKMGHYASQCPD 266
>gb|AAL75747.1|AC091724_20 (AC091724) Putative polyprotein [Oryza sativa]
Length = 494
Score = 36.6 bits (83), Expect = 0.049
Identities = 18/70 (25%), Positives = 27/70 (37%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H CP+ + F + +VNH + EE +
Sbjct: 388 PEQPKRLGEKPELCFNCNKPGHTVGKCPKPR---------RAGPKFVQARVNHASAEEAQ 438
Query: 56 DQPDAVIGKF 27
P ++G F
Sbjct: 439 SAPKVILGTF 448
>gb|AAL69435.1|AC098565_17 (AC098565) Putative polyprotein [Oryza sativa]
Length = 1156
Score = 35.8 bits (81), Expect = 0.083
Identities = 25/81 (30%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Frame = -2
Query: 236 PSTPA------KKDL--SQVTCFKCQKTRHFANGCPES--QXXXXXXXXXXXXXPFNRGQ 87
P TPA ++D+ Q CF + HFA+ CP+ Q RG+
Sbjct: 243 PPTPAVQPGQGRRDVHGQQRLCFNYFEPGHFADKCPKPRRQQGQAPPRPNNGGKDVIRGR 302
Query: 86 VNHVNVEEVEDQPDAVIGKFL 24
VNHV E++ P ++G FL
Sbjct: 303 VNHVTAEDMLTTPGVIVGTFL 323
>gb|AAF79483.1|AC022492_27 (AC022492) F1L3.20 [Arabidopsis thaliana]
Length = 1188
Score = 34.7 bits (78), Expect = 0.19
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGCPE 150
+D SQ+ CF+C K H+A+ CP+
Sbjct: 244 RDTSQIMCFRCDKLGHYASQCPD 266
>gb|AAF97298.1|AC007843_1 (AC007843) Hypothetical protein [Arabidopsis thaliana]
Length = 362
Score = 34.7 bits (78), Expect = 0.19
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGCPE 150
+D SQ+ CF+C K H+A+ CP+
Sbjct: 244 RDTSQIMCFRCDKLGHYASQCPD 266
>dbj|BAB02990.1| (AP000736) retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1250
Score = 33.9 bits (76), Expect = 0.32
Identities = 10/24 (41%), Positives = 18/24 (74%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGCPE 150
++D S+V C++C K H+A+ CP+
Sbjct: 181 ERDTSKVVCYRCDKLGHYASSCPD 204
>gb|AAD22153.1|AF061282_6 (AF061282) polyprotein [Sorghum bicolor]
Length = 1484
Score = 33.9 bits (76), Expect = 0.32
Identities = 19/69 (27%), Positives = 29/69 (41%)
Frame = -2
Query: 233 STPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVED 54
ST + CF+C K H + CPE N +VN+V E V++
Sbjct: 325 STKRSASNTPTRCFRCGKEGHMSYDCPEK----FNPQYNDRRSTPNSAKVNNVAAETVQE 380
Query: 53 QPDAVIGKF 27
P+ ++G F
Sbjct: 381 GPEIMMGTF 389
>gb|AAK13085.1|AC078839_1 (AC078839) Similar to Sorghum bicolor 22
kDakafirinclusterpolyprotein [Oryza sativa]
Length = 1484
Score = 33.1 bits (74), Expect = 0.54
Identities = 16/70 (22%), Positives = 27/70 (37%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPESQXXXXXXXXXXXXXPFNRGQVNHVNVEEVE 57
P P + CF C K H C + + F + +VNH + +E +
Sbjct: 318 PEQPKRLGEKPELCFNCNKPGHTVGKCQKPR---------RAGPKFVQARVNHASAKEAQ 368
Query: 56 DQPDAVIGKF 27
P+ ++G F
Sbjct: 369 SAPEVILGTF 378
>gb|AAM22635.1|AF434192_2 (AF434192) Gag and Pol [Zea mays]
Length = 1264
Score = 32.7 bits (73), Expect = 0.71
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGCPE 150
KK+ +++TCF C + HFA CP+
Sbjct: 200 KKNKAELTCFACGEAGHFAKDCPD 223
>pir||S02021 micropia polyprotein - fruit fly (Drosophila melanogaster)
(fragment)
Length = 1291
Score = 32.3 bits (72), Expect = 0.92
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGCPES 147
+++ S VTC++C + HF+N CP++
Sbjct: 237 QREKSNVTCYRCGQPGHFSNQCPKN 261
>emb|CAA32198.1| (X14037) polyprotein [Drosophila melanogaster]
Length = 1053
Score = 32.3 bits (72), Expect = 0.92
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGCPES 147
+++ S VTC++C + HF+N CP++
Sbjct: 237 QREKSNVTCYRCGQPGHFSNQCPKN 261
>gb|AAM01072.1|AC092748_10 (AC092748) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 746
Score = 32.0 bits (71), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 224 AKKDLSQVTCFKCQKTRHFANGCP 153
+KKD+ ++ CFKC + HFA+ P
Sbjct: 471 SKKDIPRIKCFKCTEAGHFASRSP 494
>ref|NP_477156.1| (NM_057808) Clp-P1; Single stranded-binding protein c6a [Drosophila
melanogaster]
gb|AAF51453.1| (AE003588) Clp gene product [Drosophila melanogaster]
Length = 296
Score = 32.0 bits (71), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = -2
Query: 212 LSQVTCFKCQKTRHFANGCPE 150
L ++TC+KC H+AN CP+
Sbjct: 263 LEEITCYKCGNKGHYANKCPK 283
>gb|AAA67954.1| (U26549) zinc finger protein [Drosophila melanogaster]
Length = 296
Score = 32.0 bits (71), Expect = 1.2
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = -2
Query: 212 LSQVTCFKCQKTRHFANGCPE 150
L ++TC+KC H+AN CP+
Sbjct: 263 LEEITCYKCGNKGHYANKCPK 283
>gb|AAL31683.1|AC092390_4 (AC092390) putative polyprotein [Oryza sativa]
Length = 962
Score = 32.0 bits (71), Expect = 1.2
Identities = 17/76 (22%), Positives = 26/76 (33%), Gaps = 15/76 (19%)
Frame = -2
Query: 197 CFKCQKTRHFANGCPESQXXXXXXXXXXXXXP---------------FNRGQVNHVNVEE 63
C+ C HFA CP Q RGQV+H+ EE
Sbjct: 210 CYVCGNIGHFARLCPNRQNMGGQTSYQKPSTTGFIKKNPPIIKSGPNIRRGQVHHIKAEE 269
Query: 62 VEDQPDAVIGKFLTCP 15
+ P+ ++ ++ P
Sbjct: 270 AQQDPNILMDIYMRIP 285
>gb|AAF46931.1| (AE003459) CG3800 gene product [Drosophila melanogaster]
Length = 124
Score = 31.6 bits (70), Expect = 1.6
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPES 147
P ++ + V+C+KC +T H + CPE+
Sbjct: 71 PEAVNERGPTNVSCYKCNRTGHISKNCPET 100
Score = 31.2 bits (69), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 218 KDLSQV---TCFKCQKTRHFANGCPES 147
KD +Q TC++C KT H+ CPE+
Sbjct: 47 KDCTQADNPTCYRCNKTGHWVRNCPEA 73
>gb|AAL68216.1| (AY075371) GM14667p [Drosophila melanogaster]
Length = 165
Score = 31.6 bits (70), Expect = 1.6
Identities = 10/30 (33%), Positives = 18/30 (59%)
Frame = -2
Query: 236 PSTPAKKDLSQVTCFKCQKTRHFANGCPES 147
P ++ + V+C+KC +T H + CPE+
Sbjct: 112 PEAVNERGPTNVSCYKCNRTGHISKNCPET 141
Score = 31.2 bits (69), Expect = 2.1
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Frame = -2
Query: 218 KDLSQV---TCFKCQKTRHFANGCPES 147
KD +Q TC++C KT H+ CPE+
Sbjct: 88 KDCTQADNPTCYRCNKTGHWVRNCPEA 114
>gb|AAC48759.1| (U96448) cleavage and polyadenylation specificity factor 30 kDa
subunit [Bos taurus]
Length = 243
Score = 31.2 bits (69), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGC 156
+ L QVTC+KC + H+AN C
Sbjct: 212 RPLEQVTCYKCGEKGHYANRC 232
>ref|NP_006684.1| (NM_006693) cleavage and polyadenylation specific factor 4, 30kD
subunit; cleavage-polyadenylation specificity factor,
30kD; no arches-like (zebrafish) zinc finger protein;
cleavage-polyadenylation specificity factor [Homo
sapiens]
gb|AAD00321.1| (U79569) no arches [Homo sapiens]
Length = 269
Score = 31.2 bits (69), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGC 156
+ L QVTC+KC + H+AN C
Sbjct: 238 RPLEQVTCYKCGEKGHYANRC 258
>ref|NP_571084.1| (NM_131009) no arches [Danio rerio]
gb|AAC60040.1| (U70479) no arches [Danio rerio]
Length = 271
Score = 31.2 bits (69), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGC 156
+ L QVTC+KC + H+AN C
Sbjct: 240 RPLDQVTCYKCGEKGHYANKC 260
>ref|NP_178607.1| (NM_126562) putative retroelement pol polyprotein [Arabidopsis
thaliana]
gb|AAD32898.1| (AC007289) putative retroelement pol polyprotein [Arabidopsis
thaliana]
Length = 1307
Score = 31.2 bits (69), Expect = 2.1
Identities = 10/22 (45%), Positives = 17/22 (76%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGC 156
++D S+V C++C KT H+A+ C
Sbjct: 207 QRDKSKVICYRCDKTGHYASEC 228
>gb|AAH03101.1|AAH03101 (BC003101) Similar to cleavage and polyadenylation specific factor
4, 30kD subunit [Homo sapiens]
Length = 244
Score = 31.2 bits (69), Expect = 2.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGC 156
+ L QVTC+KC + H+AN C
Sbjct: 213 RPLEQVTCYKCGEKGHYANRC 233
>emb|CAD13472.1| (AJ421618) helicase [Arabidopsis thaliana]
Length = 870
Score = 31.2 bits (69), Expect = 2.1
Identities = 22/99 (22%), Positives = 47/99 (47%)
Frame = +3
Query: 81 VHLSPVERVRLLPRASIAISIL*FRTSIGKMSGLLALKASDLAQVFLGWG*WVGTVLAVA 260
+ L V+ +R+LP+ +I ++ ++S ++ A+ A+ L + + G V + AVA
Sbjct: 615 LELGEVQYLRMLPQLNICCTLNFHKSSPNTLAARSAIVAAILKKSHVKQGLHVFDIPAVA 674
Query: 261 SSIAITILGAVVIVRATSSMGMLKMSSRSGGKTWLLLSS 377
SSI + + ++A G + + + +L S
Sbjct: 675 SSICVATTDVLAEIQALKMKGEVTYELKDSAFCYTILKS 713
>ref|NP_442301.1| (NC_000911) methionyl-tRNA synthetase [Synechocystis sp. PCC 6803]
sp|Q55729|SYM_SYNY3 Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
pir||S76525 methionine--tRNA ligase (EC 6.1.1.10) - Synechocystis sp. (strain
PCC 6803)
dbj|BAA10371.1| (D64002) methionyl-tRNA synthetase [Synechocystis sp. PCC 6803]
Length = 532
Score = 31.2 bits (69), Expect = 2.1
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 360 KFYPQIGRTFSAYPWRR*LAQSQ---RHQEW*WQWRKQRPEPYQPI 232
K Y Q+G T+ WR L Q++ RHQ W Q P QPI
Sbjct: 477 KIYQQLGFTWDFDQWRSPLEQAEEFNRHQSWGQLGANQNLPPAQPI 522
>pir||S42136 cnjB protein - Tetrahymena thermophila
gb|AAC37171.1| (L03710) cnjB [Tetrahymena thermophila]
prf||1922371A cnjB gene [Tetrahymena thermophila]
Length = 1748
Score = 30.8 bits (68), Expect = 2.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 221 KKDLSQVTCFKCQKTRHFANGCPESQ 144
+K + TCFKC++ H + CP SQ
Sbjct: 1547 QKQQQKNTCFKCKQEGHISKDCPNSQ 1572
>sp|P52071|YPH1_METEX Hypothetical protein in phaC 3'region (ORF1)
gb|AAA72331.1| (L07893) [phaC] gene products [Methylobacterium extorquens]
Length = 276
Score = 30.8 bits (68), Expect = 2.7
Identities = 36/122 (29%), Positives = 54/122 (43%), Gaps = 1/122 (0%)
Frame = +3
Query: 9 PPRAGQKLTYYCIGLIFNL-LHVNVVHLSPVERVRLLPRASIAISIL*FRTSIGKMSGLL 185
P A Q I L+F + LH ++ L V + L P A + I++ T++G
Sbjct: 54 PALASQLAELGVILLMFGVGLHFSIGDLLAVRTIAL-PGAIVQITVA---TAMG------ 103
Query: 186 ALKASDLAQVFLGWG*WVGTVLAVASSIAITILGAVVIVRATSSMGMLKMSSRSGGKTWL 365
+ LA F GWG G V +A S+A T VV++RA G+L WL
Sbjct: 104 ----AGLAWGF-GWGAGAGLVFGLALSVAST----VVLLRALEGQGLLDSDKGRIAVGWL 154
Query: 366 LL 371
++
Sbjct: 155 IV 156
>dbj|BAB68043.1| (AP003453) putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
dbj|BAB89833.1| (AP003288) putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1433
Score = 30.4 bits (67), Expect = 3.5
Identities = 9/22 (40%), Positives = 15/22 (67%)
Frame = -2
Query: 218 KDLSQVTCFKCQKTRHFANGCP 153
+D S + CF C++ H++N CP
Sbjct: 281 RDKSHIKCFNCEEYGHYSNQCP 302
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,289,893
Number of Sequences: 922381
Number of extensions: 3844655
Number of successful extensions: 14429
Number of sequences better than 10.0: 256
Number of HSP's better than 10.0 without gapping: 13089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14379
length of database: 289,601,141
effective HSP length: 110
effective length of database: 188,139,231
effective search space used: 4515341544
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)