The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F10_T7.seq Fgr-S3_1_F10_T7 LENGTH:405bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F10 ; CLONELIB: n/a
(405 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_003644.1| Homo sapiens growth arrest-specific 7 (GAS... 48 0.007
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 48 0.007
emb|AJ224876.1|HSAJ4876 Homo sapiens mRNA for GAS7 protein 48 0.007
emb|AL157817.13|AL157817 Human DNA sequence from clone RP11... 46 0.028
emb|AJ293761.1|ABI293761 Agaricus bisporus mRNA for putativ... 46 0.028
gb|U60171.1|SCU60171 Sphingomonas chlorophenolica strain AT... 44 0.11
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 42 0.44
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 42 0.44
emb|AJ252088.1|SDU252088 Solanum dulcamara mRNA for gibbere... 42 0.44
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 42 0.44
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 42 0.44
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 42 0.44
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 42 0.44
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 42 0.44
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 42 0.44
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 42 0.44
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 42 0.44
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 42 0.44
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 42 0.44
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 42 0.44
gb|AC104802.4| Homo sapiens BAC clone RP11-456I21 from 2, c... 40 1.7
emb|AL591417.9| Mouse DNA sequence from clone RP23-272C1 on... 40 1.7
emb|AL596224.10| Human DNA sequence from clone RP11-26F12 o... 40 1.7
gb|AF136523.1|AF136523 Homo sapiens 40 1.7
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 1.7
ref|NG_000161.1| Drosophila melanogaster (sm) on chromosome 1 38 6.9
gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, ... 38 6.9
ref|NM_068341.1| Caenorhabditis elegans 38 6.9
gb|AC068985.17| Homo sapiens 3 BAC RP11-217E22 (Roswell Par... 38 6.9
gb|AC099014.1| Drosophila melanogaster, chromosome 2R, regi... 38 6.9
gb|AC099013.1| Drosophila melanogaster, chromosome 2R, regi... 38 6.9
gb|AF421559.1|AF421559 Glycine max inosine-5'-monophosphate... 38 6.9
gb|AC009251.6|AC009251 Drosophila melanogaster, chromosome ... 38 6.9
gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome ... 38 6.9
gb|AC009350.4|AC009350 Drosophila melanogaster, chromosome ... 38 6.9
gb|AC007824.5|AC007824 Drosophila melanogaster, chromosome ... 38 6.9
gb|AE003655.2|AE003655 Drosophila melanogaster genomic scaf... 38 6.9
gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaf... 38 6.9
gb|AE003795.2|AE003795 Drosophila melanogaster genomic scaf... 38 6.9
gb|AE003716.2|AE003716 Drosophila melanogaster genomic scaf... 38 6.9
gb|AE003683.2|AE003683 Drosophila melanogaster genomic scaf... 38 6.9
emb|AL669920.15| Mouse DNA sequence from clone RP23-263C23 ... 38 6.9
emb|AL136221.38|AL136221 Human DNA sequence from clone RP11... 38 6.9
emb|AJ324541.1|HSA324541 Homo sapiens genomic sequence surr... 38 6.9
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 6.9
emb|AL109809.18|HSJ673D20 Human DNA sequence from clone RP4... 38 6.9
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 6.9
emb|AL109983.2|HSJ718P11 Human DNA sequence from clone RP4-... 38 6.9
gb|S69000.1|S69000 interferon-omega45 [rabbits, Genomic, 15... 38 6.9
gb|S69129.1|S69129 interferon-omega20 [rabbits, Genomic, 16... 38 6.9
emb|AL136381.12|AL136381 Human DNA sequence from clone RP5-... 38 6.9
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 6.9
gb|AC005148.1|AC005148 Drosophila melanogaster DNA sequence... 38 6.9
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 6.9
emb|Y11883.1|TPRAB3CLP T.pseudospiralis mRNA for rab3C-like... 38 6.9
emb|Y11888.1|TBRAB5AP T.britovi mRNA for rab5A-like protein... 38 6.9
dbj|AB073680.1| Turbo marmoratus mRNA for nacrein, complete... 38 6.9
dbj|AP003334.4| Oryza sativa (japonica cultivar-group) geno... 38 6.9
gb|U95626.1|HSU95626 Homo sapiens chromosome 3 clone BAC 11... 38 6.9
emb|AJ245736.1|DPU245736 Daphnia pulex mRNA for aconitase 38 6.9
emb|AL049859.7|HSJ826A18 Human DNA sequence from clone 826A... 38 6.9
emb|AL096802.11|HSBG13C1 Human DNA sequence from clone GS1-... 38 6.9
dbj|AP001107.5|AP001107 Homo sapiens genomic DNA, chromosom... 38 6.9
emb|AJ010201.1|GMA010201 Glycine max mRNA for inosine monop... 38 6.9
gb|U26254.1|OAU26254 Ovis aries interferon type I precursor... 38 6.9
emb|X59068.1|OAAMY49 O.aries Amy 49 gene for ovine interfer... 38 6.9
dbj|AB031228.1|AB031228 Pisum sativum PsAD2 mRNA, complete cds 38 6.9
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 6.9
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 6.9
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 6.9
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 6.9
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 6.9
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 6.9
>ref|NM_003644.1| Homo sapiens growth arrest-specific 7 (GAS7), transcript variant
a, mRNA
Length = 2427
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgagcggccgccccgggcaggtc 24
||||||||||||||||||||||||
Sbjct: 1 tcgagcggccgccccgggcaggtc 24
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 381 attgtacctcggccgcgaccacgc 404
||||||||||||||||||||||||
Sbjct: 506 attgtacctcggccgcgaccacgc 529
>emb|AJ224876.1|HSAJ4876 Homo sapiens mRNA for GAS7 protein
Length = 2427
Score = 48.1 bits (24), Expect = 0.007
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tcgagcggccgccccgggcaggtc 24
||||||||||||||||||||||||
Sbjct: 1 tcgagcggccgccccgggcaggtc 24
>emb|AL157817.13|AL157817 Human DNA sequence from clone RP11-457D13 on chromosome 13q14.2-21.1.
Contains an RPL5 (60S ribosomal protein 5) pseudogene.
Contains STSs, GSSs, ESTs and a CpG island, complete
sequence [Homo sapiens]
Length = 176148
Score = 46.1 bits (23), Expect = 0.028
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 116 tcccagagcttccattgccattt 138
|||||||||||||||||||||||
Sbjct: 98511 tcccagagcttccattgccattt 98489
>emb|AJ293761.1|ABI293761 Agaricus bisporus mRNA for putative xylanase (xyl1 gene), strain
D649
Length = 1171
Score = 46.1 bits (23), Expect = 0.028
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgagcggccgccccgggcaggt 23
|||||||||||||||||||||||
Sbjct: 134 tcgagcggccgccccgggcaggt 156
>gb|U60171.1|SCU60171 Sphingomonas chlorophenolica strain ATCC 33790 16S rRNA gene,
partial sequence
Length = 1021
Score = 44.1 bits (22), Expect = 0.11
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 237 gttggtacggttctggccgttgcttc 262
||||||| ||||||||||||||||||
Sbjct: 641 gttggtaaggttctggccgttgcttc 616
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 844 gtacctcggccgcgaccacgc 864
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 527 gtacctcggccgcgaccacgc 547
>emb|AJ252088.1|SDU252088 Solanum dulcamara mRNA for gibberellin 20-oxidase (ga20ox1 gene)
Length = 1539
Score = 42.1 bits (21), Expect = 0.44
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 1 tcgagcggccgccccgggcaggtcaaaaa 29
|||||||||||||| ||||||||||||||
Sbjct: 15 tcgagcggccgccc-gggcaggtcaaaaa 42
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 77 gtacctcggccgcgaccacgc 57
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 40 gtacctcggccgcgaccacgc 20
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 52 gtacctcggccgcgaccacgc 32
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 401 gtacctcggccgcgaccacgc 421
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 682 gtacctcggccgcgaccacgc 702
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 427 gtacctcggccgcgaccacgc 447
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 282 gtacctcggccgcgaccacgc 302
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 23 gtacctcggccgcgaccacgc 3
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 405 gtacctcggccgcgaccacgc 425
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgc 2
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 384 gtacctcggccgcgaccacgc 404
|||||||||||||||||||||
Sbjct: 312 gtacctcggccgcgaccacgc 332
>gb|AC104802.4| Homo sapiens BAC clone RP11-456I21 from 2, complete sequence
Length = 30108
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 178 gtcttctggcacttaaagca 197
||||||||||||||||||||
Sbjct: 24096 gtcttctggcacttaaagca 24077
>emb|AL591417.9| Mouse DNA sequence from clone RP23-272C1 on chromosome 11, complete
sequence [Mus musculus]
Length = 131385
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88 tgtcccctgttgaaagggtt 107
||||||||||||||||||||
Sbjct: 96672 tgtcccctgttgaaagggtt 96653
>emb|AL596224.10| Human DNA sequence from clone RP11-26F12 on chromosome 1, complete
sequence [Homo sapiens]
Length = 114784
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 256 ttgcttcctccattgccatt 275
||||||||||||||||||||
Sbjct: 107715 ttgcttcctccattgccatt 107696
>gb|AF136523.1|AF136523 Homo sapiens
Length = 4280
Score = 40.1 bits (20), Expect = 1.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tcgagcggccgccccgggcaggtc 24
|||||||||||||| |||||||||
Sbjct: 16 tcgagcggccgcccggggcaggtc 39
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 385 tacctcggccgcgaccacgc 404
||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgc 2
>ref|NG_000161.1| Drosophila melanogaster (sm) on chromosome 1
Length = 111523
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 105356 ttccattgccatttccatt 105338
>gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, complete sequence
Length = 191119
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 130 ttgccatttccattctgtg 148
|||||||||||||||||||
Sbjct: 147387 ttgccatttccattctgtg 147369
>ref|NM_068341.1| Caenorhabditis elegans
Length = 3303
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 803 ttccattgccatttccatt 821
>gb|AC068985.17| Homo sapiens 3 BAC RP11-217E22 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 173106
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 149 attcaggacatccattggc 167
|||||||||||||||||||
Sbjct: 36490 attcaggacatccattggc 36472
>gb|AC099014.1| Drosophila melanogaster, chromosome 2R, region 56D-56D, BAC clone
BACR26L01, complete sequence
Length = 160106
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 121769 ttccattgccatttccatt 121751
>gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56D-56E, BAC clone
BACR25K02, complete sequence
Length = 173347
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 156314 ttccattgccatttccatt 156332
>gb|AF421559.1|AF421559 Glycine max inosine-5'-monophosphate dehydrogenase-like protein
mRNA, complete cds
Length = 1472
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 222 ggctggggttgatgggttg 240
|||||||||||||||||||
Sbjct: 583 ggctggggttgatgggttg 601
>gb|AC009251.6|AC009251 Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
BACR48K02, complete sequence
Length = 178530
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126 tccattgccatttccattc 144
|||||||||||||||||||
Sbjct: 62962 tccattgccatttccattc 62980
>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone
BACR48C05, complete sequence
Length = 164450
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 264 tccattgccattaccattc 282
|||||||||||||||||||
Sbjct: 3505 tccattgccattaccattc 3523
>gb|AC009350.4|AC009350 Drosophila melanogaster, chromosome 3R, region 85D-85E, BAC clone
BACR19N07, complete sequence
Length = 176933
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 101371 ttccattgccatttccatt 101389
>gb|AC007824.5|AC007824 Drosophila melanogaster, chromosome 3R, region 89E-90A, BAC clone
BACR02L16, complete sequence
Length = 190866
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 264 tccattgccattaccattc 282
|||||||||||||||||||
Sbjct: 159146 tccattgccattaccattc 159164
>gb|AE003655.2|AE003655 Drosophila melanogaster genomic scaffold 142000013386055 section 48 of
63, complete sequence
Length = 253753
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126 tccattgccatttccattc 144
|||||||||||||||||||
Sbjct: 190568 tccattgccatttccattc 190586
>gb|AE003426.1|AE003426 Drosophila melanogaster genomic scaffold 142000013386054 section 10 of
35, complete sequence
Length = 300193
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 172795 ttccattgccatttccatt 172813
>gb|AE003795.2|AE003795 Drosophila melanogaster genomic scaffold 142000013386047 section 48 of
52, complete sequence
Length = 259914
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 84380 ttccattgccatttccatt 84398
>gb|AE003716.2|AE003716 Drosophila melanogaster genomic scaffold 142000013386035 section 41 of
105, complete sequence
Length = 225039
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 264 tccattgccattaccattc 282
|||||||||||||||||||
Sbjct: 210195 tccattgccattaccattc 210213
>gb|AE003683.2|AE003683 Drosophila melanogaster genomic scaffold 142000013386035 section 8 of
105, complete sequence
Length = 243076
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 130326 ttccattgccatttccatt 130344
>emb|AL669920.15| Mouse DNA sequence from clone RP23-263C23 on chromosome 11, complete
sequence [Mus musculus]
Length = 216776
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 82 ttcacctgtcccctgttga 100
|||||||||||||||||||
Sbjct: 59934 ttcacctgtcccctgttga 59916
>emb|AL136221.38|AL136221 Human DNA sequence from clone RP11-391H12 on chromosome 13, complete
sequence [Homo sapiens]
Length = 188896
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 112 ttcttcccagagcttccat 130
|||||||||||||||||||
Sbjct: 137719 ttcttcccagagcttccat 137701
>emb|AJ324541.1|HSA324541 Homo sapiens genomic sequence surrounding NotI site, clone
NR1-CL17R
Length = 786
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 13 cccgggcaggtcaaaaact 31
|||||||||||||||||||
Sbjct: 393 cccgggcaggtcaaaaact 375
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>emb|AL109809.18|HSJ673D20 Human DNA sequence from clone RP4-673D20 on chromosome 20 Contains a
PTPNS (protein tyrosine phosphatase, non-receptor type
substrate) family pseudogene, STSs, GSSs and a CpG island,
complete sequence [Homo sapiens]
Length = 132396
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 181 ttctggcacttaaagcaag 199
|||||||||||||||||||
Sbjct: 52769 ttctggcacttaaagcaag 52751
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 135 acctcggccgcgaccacgc 153
>emb|AL109983.2|HSJ718P11 Human DNA sequence from clone RP4-718P11 on chromosome 20p12.1-12.3.
Contains part of the gene for a novel class II
aminotransferase similar to serine palmotyltransferase,
ESTs, STSs and GSSs, complete sequence [Homo sapiens]
Length = 104913
Score = 38.2 bits (19), Expect = 6.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 134 catttccattctgtgattcagga 156
||||||||||||||| |||||||
Sbjct: 50641 catttccattctgtggttcagga 50619
>gb|S69000.1|S69000 interferon-omega45 [rabbits, Genomic, 1588 nt]
Length = 1588
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 gatcttcaacctcctccac 71
|||||||||||||||||||
Sbjct: 761 gatcttcaacctcctccac 779
>gb|S69129.1|S69129 interferon-omega20 [rabbits, Genomic, 1609 nt]
Length = 1609
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 gatcttcaacctcctccac 71
|||||||||||||||||||
Sbjct: 788 gatcttcaacctcctccac 806
>emb|AL136381.12|AL136381 Human DNA sequence from clone RP5-905H16 on chromosome 1p22.1-22.3
Contains the 3' part of the PRKCL2 (protein kinase C-like
2) gene, ESTs, STSs and GSSs, complete sequence [Homo
sapiens]
Length = 131847
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 188 acttaaagcaagtgacttg 206
|||||||||||||||||||
Sbjct: 113084 acttaaagcaagtgacttg 113102
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 39 acctcggccgcgaccacgc 21
>gb|AC005148.1|AC005148 Drosophila melanogaster DNA sequence (P1s DS05759 (D204) and DS09033
(D211)), complete sequence
Length = 95262
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 18167 ttccattgccatttccatt 18185
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>emb|Y11883.1|TPRAB3CLP T.pseudospiralis mRNA for rab3C-like protein, partial
Length = 219
Score = 38.2 bits (19), Expect = 6.9
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 2 cgagcggccgccccgggcaggtcaaaa 28
||||||||||||| |||||||||||||
Sbjct: 1 cgagcggccgccc-gggcaggtcaaaa 26
>emb|Y11888.1|TBRAB5AP T.britovi mRNA for rab5A-like protein, partial
Length = 219
Score = 38.2 bits (19), Expect = 6.9
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 2 cgagcggccgccccgggcaggtcaaaa 28
||||||||||||| |||||||||||||
Sbjct: 1 cgagcggccgccc-gggcaggtcaaaa 26
>dbj|AB073680.1| Turbo marmoratus mRNA for nacrein, complete cds
Length = 1710
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125 ttccattgccatttccatt 143
|||||||||||||||||||
Sbjct: 1053 ttccattgccatttccatt 1035
>dbj|AP003334.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1114B07
Length = 148060
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 154 ggacatccattggcaaaat 172
|||||||||||||||||||
Sbjct: 122303 ggacatccattggcaaaat 122321
>gb|U95626.1|HSU95626 Homo sapiens chromosome 3 clone BAC 110P12, complete sequence
Length = 143068
Score = 38.2 bits (19), Expect = 6.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 359 ttggcttctgctaagctcctgaa 381
||||||||||| |||||||||||
Sbjct: 85953 ttggcttctgccaagctcctgaa 85931
>emb|AJ245736.1|DPU245736 Daphnia pulex mRNA for aconitase
Length = 2558
Score = 38.2 bits (19), Expect = 6.9
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 1 tcgagcggccgccccgggcaggtcaaa 27
|||||||||||||| ||||||||||||
Sbjct: 1 tcgagcggccgccc-gggcaggtcaaa 26
>emb|AL049859.7|HSJ826A18 Human DNA sequence from clone 826A18 on chromosome Xq23. Contains STSs
and GSSs, complete sequence [Homo sapiens]
Length = 77913
Score = 38.2 bits (19), Expect = 6.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 125 ttccattgccatttccattctgt 147
|||| ||||||||||||||||||
Sbjct: 52213 ttcctttgccatttccattctgt 52235
>emb|AL096802.11|HSBG13C1 Human DNA sequence from clone GS1-13C1 on chromosome 1q25-31.1 Contains
STSs and GSSs, complete sequence [Homo sapiens]
Length = 75414
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 302 gcgagctacctcctccatg 320
|||||||||||||||||||
Sbjct: 32281 gcgagctacctcctccatg 32299
>dbj|AP001107.5|AP001107 Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete
sequences
Length = 196662
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 325 tgctgaaaatgtcctcccg 343
|||||||||||||||||||
Sbjct: 29986 tgctgaaaatgtcctcccg 30004
>emb|AJ010201.1|GMA010201 Glycine max mRNA for inosine monophosphate dehydrogenase
Length = 2016
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 222 ggctggggttgatgggttg 240
|||||||||||||||||||
Sbjct: 1081 ggctggggttgatgggttg 1099
>gb|U26254.1|OAU26254 Ovis aries interferon type I precursor gene, complete cds
Length = 1383
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 gatcttcaacctcctccac 71
|||||||||||||||||||
Sbjct: 681 gatcttcaacctcctccac 699
>emb|X59068.1|OAAMY49 O.aries Amy 49 gene for ovine interferon alpha
Length = 1228
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 gatcttcaacctcctccac 71
|||||||||||||||||||
Sbjct: 628 gatcttcaacctcctccac 646
>dbj|AB031228.1|AB031228 Pisum sativum PsAD2 mRNA, complete cds
Length = 522
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 262 cctccattgccattaccat 280
|||||||||||||||||||
Sbjct: 287 cctccattgccattaccat 269
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 37 acctcggccgcgaccacgc 55
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 6.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 386 acctcggccgcgaccacgc 404
|||||||||||||||||||
Sbjct: 84 acctcggccgcgaccacgc 102
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,080,064
Number of Sequences: 1217082
Number of extensions: 1080064
Number of successful extensions: 19557
Number of sequences better than 10.0: 73
length of query: 405
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 384
effective length of database: 5,475,288,455
effective search space: 2102510766720
effective search space used: 2102510766720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)