The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F11_T7.seq Fgr-S3_1_F11_T7 LENGTH:344bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F11 ; CLONELIB: n/a
(344 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_102304.1| (NC_002678) ATP-binding protein of ABC-tra... 33 0.59
ref|NP_188621.1| (NM_112877) unknown protein [Arabidopsis t... 31 2.3
emb|CAC15781.1| (AJ402494) immunoglobulin heavy chain varia... 30 5.0
dbj|BAB78652.1| (AP003022) contains EST AU064251(E20405)~si... 30 5.0
ref|NP_355424.1| (NC_003062) AGR_C_4489p [Agrobacterium tum... 30 6.6
ref|NP_110867.1| (NC_002689) Preprotein translocase SEC61 (... 29 8.6
dbj|BAB59494.1| (AP000992) preprotein translocase Sec61 [Th... 29 8.6
>ref|NP_102304.1| (NC_002678) ATP-binding protein of ABC-transporter [Mesorhizobium
loti]
dbj|BAB48090.1| (AP002995) ATP-binding protein of ABC-transporter [Mesorhizobium
loti]
Length = 661
Score = 33.1 bits (74), Expect = 0.59
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = -3
Query: 195 LGSTLGFFTRAAADLPFHEVS-----LFALALLETSGFTNVRGLCSSPIFRQ 55
LG+++ FF AA P + L L +L+ +GFT VRGL S+ + R+
Sbjct: 79 LGNSIAFFHDAANTSPLQAILTNAGILVLLVVLKDAGFTGVRGLVSATLHRK 130
>ref|NP_188621.1| (NM_112877) unknown protein [Arabidopsis thaliana]
dbj|BAB01301.1| (AB025631) gene_id:MPN9.11~unknown protein [Arabidopsis thaliana]
Length = 1117
Score = 31.2 bits (69), Expect = 2.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 267 IYQVSRVILLQWLFPLLQKHLVSG 196
IY V R++ L WL LL KH++SG
Sbjct: 339 IYLVFRLLALHWLMGLLNKHMLSG 362
>emb|CAC15781.1| (AJ402494) immunoglobulin heavy chain variable region [Homo
sapiens]
Length = 74
Score = 30.0 bits (66), Expect = 5.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 315 NTMYIQYTSIDLASLLIYQVSRVILLQWLFPL 220
NT+Y+Q S+ +Y ++V+++ W F L
Sbjct: 42 NTLYLQMNSLRAEDTAVYYCAKVVVIDWYFDL 73
>dbj|BAB78652.1| (AP003022) contains EST AU064251(E20405)~similar to Arabidopsis
thaliana chromosome 3, F16B3.5~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 232
Score = 30.0 bits (66), Expect = 5.0
Identities = 18/51 (35%), Positives = 25/51 (48%), Gaps = 9/51 (17%)
Frame = -1
Query: 293 LLSTLPAFLSTK-----YLG*FCSSGYSPYYRST*SRVW----VQPWVSSL 168
+L LP +++K LG CSS YS Y R W +QPW+ S+
Sbjct: 151 ILPILPKHIASKAYRLSLLGTICSSAYSLYVTYGKPRAWNMAAIQPWLQSI 201
>ref|NP_355424.1| (NC_003062) AGR_C_4489p [Agrobacterium tumefaciens] [Agrobacterium
tumefaciens str. C58 (Cereon)]
ref|NP_533146.1| (NC_003304) ABC transporter, membrane spanning protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
gb|AAK88209.1| (AE008160) AGR_C_4489p [Agrobacterium tumefaciens str. C58
(Cereon)]
gb|AAL43462.1| (AE009194) ABC transporter, membrane spanning protein
[Agrobacterium tumefaciens str. C58 (U. Washington)]
Length = 321
Score = 29.6 bits (65), Expect = 6.6
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 153 LPFHEVSLFALALLETSGFTNVRGLCSSPIFRQDTTCPAL 34
LP L ALAL TS F V + + +F QDT+ AL
Sbjct: 4 LPLISALLLALALAITSLFVGVSNVSLATLFAQDTSADAL 43
>ref|NP_110867.1| (NC_002689) Preprotein translocase SEC61 (secY), subunit alpha
[Thermoplasma volcanium]
Length = 586
Score = 29.3 bits (64), Expect = 8.6
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = -3
Query: 330 GQVHINTMYIQYTSIDLASLLIYQVSRVILLQWLFPLLQKHLVSGLGSTLGFFTRAA 160
G+ + +Y + LA+ L+ VS LL W P+L K + G LG + AA
Sbjct: 352 GRYPLQLLYASNIPVILATALLANVSMWTLLFWSSPVLSKVPLLGHNKFLGSYPSAA 408
>dbj|BAB59494.1| (AP000992) preprotein translocase Sec61 [Thermoplasma volcanium]
Length = 565
Score = 29.3 bits (64), Expect = 8.6
Identities = 18/57 (31%), Positives = 27/57 (46%)
Frame = -3
Query: 330 GQVHINTMYIQYTSIDLASLLIYQVSRVILLQWLFPLLQKHLVSGLGSTLGFFTRAA 160
G+ + +Y + LA+ L+ VS LL W P+L K + G LG + AA
Sbjct: 331 GRYPLQLLYASNIPVILATALLANVSMWTLLFWSSPVLSKVPLLGHNKFLGSYPSAA 387
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,947,446
Number of Sequences: 922381
Number of extensions: 2710092
Number of successful extensions: 6790
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6790
length of database: 289,601,141
effective HSP length: 90
effective length of database: 206,586,851
effective search space used: 4958084424
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)