The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F11_T7.seq Fgr-S3_1_F11_T7 LENGTH:344bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F11 ; CLONELIB: n/a
(344 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF339051.1|AF339051 Triticum monococcum WIS-2-1A Ty1-cop... 381 e-103
emb|X63184.1|TAWIS21A T.aestivum DNA for Wis-2-1A retrotran... 373 e-101
gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, comp... 224 5e-56
gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete s... 220 7e-55
gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 200 7e-49
gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar More... 198 3e-48
gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex B... 168 2e-39
emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial... 168 2e-39
gb|AE008895.1|AE008895 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE008893.1|AE008893 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE008886.1|AE008886 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE008881.1|AE008881 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE008856.1|AE008856 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE008820.1|AE008820 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE008706.1|AE008706 Salmonella typhimurium LT2, section ... 98 7e-18
gb|AE005632.1|AE005632 Escherichia coli O157:H7 EDL933 geno... 98 7e-18
gb|AE005629.1|AE005629 Escherichia coli O157:H7 EDL933 geno... 98 7e-18
gb|AE005607.1|AE005607 Escherichia coli O157:H7 EDL933 geno... 98 7e-18
gb|AE005555.1|AE005555 Escherichia coli O157:H7 EDL933 geno... 98 7e-18
gb|AE005489.1|AE005489 Escherichia coli O157:H7 EDL933 geno... 98 7e-18
gb|AE005196.1|AE005196 Escherichia coli O157:H7 EDL933 geno... 98 7e-18
gb|AE000474.1|AE000474 Escherichia coli K12 98 7e-18
gb|AE000471.1|AE000471 Escherichia coli K12 98 7e-18
gb|AE000461.1|AE000461 Escherichia coli K12 98 7e-18
gb|AE000406.1|AE000406 Escherichia coli K12 98 7e-18
gb|AE000345.1|AE000345 Escherichia coli K12 98 7e-18
gb|AE000129.1|AE000129 Escherichia coli K12 98 7e-18
emb|AL627282.1|AL627282 Salmonella enterica serovar Typhi (... 98 7e-18
emb|AL627280.1|AL627280 Salmonella enterica serovar Typhi (... 98 7e-18
emb|AL627279.1|AL627279 Salmonella enterica serovar Typhi (... 98 7e-18
emb|AL627278.1|AL627278 Salmonella enterica serovar Typhi (... 98 7e-18
emb|AL627276.1|AL627276 Salmonella enterica serovar Typhi (... 98 7e-18
emb|AL627266.1|AL627266 Salmonella enterica serovar Typhi (... 98 7e-18
gb|AF170176.1|STYSTMF1 Salmonella typhimurium LT2 clone STM... 98 7e-18
gb|AF146763.1|AF146763 Klebsiella oxytoca 800.98 23S riboso... 98 7e-18
gb|AF233324.1|STYSTMD1 Salmonella typhimurium LT2 clone STM... 98 7e-18
gb|AF053968.1|AF053968 Escherichia coli strain A 8190 rrlC ... 98 7e-18
gb|AF053967.1|AF053967 Escherichia coli strain ECOR 24 rrlB... 98 7e-18
gb|AF053966.1|AF053966 Escherichia coli rrlD operon, comple... 98 7e-18
gb|AF053965.1|AF053965 Escherichia coli strain ECOR 40 rrlB... 98 7e-18
gb|AF053964.1|AF053964 Escherichia coli strain ECOR 52 rrlD... 98 7e-18
gb|AF053963.1|AF053963 Escherichia coli strain ECOR 35 rrlC... 98 7e-18
gb|U18997.1|ECOUW67 Escherichia coli K-12 chromosomal regio... 98 7e-18
emb|AJ278710.1|ECO278710 Escherichia coli 23S rRNA gene, st... 98 7e-18
gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to... 98 7e-18
gb|U77929.1|SEU77929 Salmonella enterica V 1,6,14,25:a:e,n,... 98 7e-18
gb|U77928.1|CFU77928 Citrobacter freundii 23S ribosomal RNA... 98 7e-18
gb|U77927.1|SBU77927 Salmonella bongori 66:z41:- 23S riboso... 98 7e-18
gb|U77926.1|SEU77926 Salmonella enterica IV 43:z4,z23:- 23S... 98 7e-18
gb|U77924.1|SEU77924 Salmonella enterica IIIa 51:z4,z23:- 2... 98 7e-18
gb|U77923.1|SEU77923 Salmonella enterica IIIa 23S ribosomal... 98 7e-18
gb|U77922.1|SEU77922 Salmonella enterica IIIb 61:i:z 23S ri... 98 7e-18
gb|U77921.1|SEU77921 Salmonella enterica II 1,9,12:1,w:e,n,... 98 7e-18
gb|U77920.1|SEU77920 Salmonella enterica 1,4,[5],12,:i:1,2 ... 98 7e-18
gb|U77919.1|SEU77919 Salmonella enterica 23S ribosomal RNA ... 98 7e-18
gb|J01695.1|ECORGNB E.coli rRNA operon (rrnB) coding for Gl... 98 7e-18
gb|U72488.1|CVU72488 Cloning vector pRNA8 98 7e-18
gb|U70214.1|ECU70214 Escherichia coli chromosome minutes 4-6 98 7e-18
dbj|AB035926.1|AB035926 Escherichia coli O157:H7 yaeD, rrsH... 98 7e-18
dbj|AB035925.1|AB035925 Escherichia coli O157:H7 clpB, rrsG... 98 7e-18
dbj|AB035924.1|AB035924 Escherichia coli O157:H7 purH, rrsE... 98 7e-18
dbj|AB035923.1|AB035923 Escherichia coli O157:H7 yrdA, rrsD... 98 7e-18
dbj|AB035922.1|AB035922 Escherichia coli O157:H7 yieP, rrsC... 98 7e-18
dbj|AB035921.1|AB035921 Escherichia coli O157:H7 murI, rrsB... 98 7e-18
dbj|AB035920.1|AB035920 Escherichia coli O157:H7 hemG, rrsA... 98 7e-18
dbj|AP002567.1|AP002567 Escherichia coli O157:H7 DNA, compl... 98 7e-18
dbj|AP002566.1|AP002566 Escherichia coli O157:H7 DNA, compl... 98 7e-18
dbj|AP002564.1|AP002564 Escherichia coli O157:H7 DNA, compl... 98 7e-18
dbj|AP002562.1|AP002562 Escherichia coli O157:H7 DNA, compl... 98 7e-18
dbj|AP002550.1|AP002550 Escherichia coli O157:H7 DNA, compl... 98 7e-18
emb|X87284.1|KP23S1388 K.pneumoniae 23S rRNA gene, ATCC 138... 98 7e-18
gb|M87049.1|ECOUW85 E. coli genomic sequence of the region ... 98 7e-18
dbj|D90887.1|D90887 E.coli genomic DNA, Kohara clone #437(5... 98 7e-18
dbj|D90886.1|D90886 E.coli genomic DNA, Kohara clone #436(5... 98 7e-18
dbj|D83536.2|ECOTSF Escherichia coli genomic DNA. (4.1 - 6.... 98 7e-18
emb|V00348.1|ECRRNBZ E. coli ribosomal operon rrnB encoding... 98 7e-18
emb|V00331.1|ECRNA3 E. coli gene rrnB (codes for 23S riboso... 98 7e-18
dbj|D12649.1|ECORRNH E.coli rrnH gene for rRNAs and tRNAs 98 7e-18
gb|M25458.1|ECORR23S E.coli 23S rRNA 96 3e-17
gb|AE005616.1|AE005616 Escherichia coli O157:H7 EDL933 geno... 94 1e-16
gb|AE000453.1|AE000453 Escherichia coli K12 94 1e-16
gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 m... 94 1e-16
gb|K01058.1|ECOTGI13 E.coli 23s rrna gene (partial) 92 4e-16
gb|AF263562.1|AF263562 Secondary endosymbiont of Heteropsyl... 90 2e-15
gb|AF263561.1|AF263561 secondary endosymbiont of Glycaspis ... 90 2e-15
gb|AE004341.1|AE004341 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004340.1|AE004340 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004319.1|AE004319 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004157.1|AE004157 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004126.1|AE004126 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004119.1|AE004119 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004106.1|AE004106 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AE004097.1|AE004097 Vibrio cholerae chromosome I, sectio... 74 1e-10
gb|AF263557.1|AF263557 Secondary endosymbiont of Bactericer... 74 1e-10
emb|AJ310650.1|VAG310650 Vibrio agarivorans 23S rRNA gene, ... 74 1e-10
emb|AJ310649.1|VAG310649 Vibrio agarivorans 23S rRNA gene, ... 74 1e-10
emb|AJ414159.1|AJ414159 Yersinia pestis strain CO92 complet... 74 1e-10
emb|AJ414158.1|AJ414158 Yersinia pestis strain CO92 complet... 74 1e-10
emb|AJ414156.1|AJ414156 Yersinia pestis strain CO92 complet... 74 1e-10
emb|AJ414146.1|AJ414146 Yersinia pestis strain CO92 complet... 74 1e-10
emb|AJ414141.1|AJ414141 Yersinia pestis strain CO92 complet... 74 1e-10
emb|AJ294425.1|VSP294425 Vibrio splendidus 23S rRNA gene, s... 74 1e-10
emb|AJ294424.1|VPE294424 Vibrio pelagius 23S rRNA gene, str... 74 1e-10
emb|AJ294423.1|VNA294423 Vibrio navarrensis 23S rRNA gene, ... 74 1e-10
emb|AJ294422.1|VME294422 Vibrio mediterranei 23S rRNA gene,... 74 1e-10
emb|AJ294421.1|VLE294421 Vibrio lentus 23S rRNA gene, strai... 74 1e-10
emb|AJ294420.1|VLE294420 Vibrio lentus 23S rRNA gene, strai... 74 1e-10
gb|U77925.1|YEU77925 Yersinia enterocolitica 23S ribosomal ... 74 1e-10
emb|X87293.1|VV23S2756 V.vulnificus 23S rRNA gene, biotype 1 74 1e-10
emb|X87294.1|VV23S2138 V.vulnificus 23S rRNA gene, biotype 2 74 1e-10
gb|U10956.1|VCU10956 Vibrio cholerae ATCC 14035 23S rRNA ge... 74 1e-10
gb|U10952.1|VCU10952 Vibrio cholerae ATCC 35971 23S rRNA ge... 74 1e-10
gb|U10951.1|VVU10951 Vibrio vulnificus ATCC 27562 23S rRNA ... 74 1e-10
gb|AF369905.1|AF369905 Serratia marcescens 23S ribosomal RN... 72 4e-10
gb|AF146762.1|AF146762 Proteus mirabilis 838.98 23S ribosom... 72 4e-10
pdb|1C2W|B Chain B, 23s Rrna Structure Fitted To A Cryo-Ele... 68 6e-09
gb|AF407378.1|AF407378 Aeromonas culicicola 23S ribosomal R... 66 3e-08
gb|AF223399.1|AF223399 Neisseria gonorrhoeae strain 1231-1 ... 66 3e-08
gb|AF223398.1|AF223398 Neisseria gonorrhoeae strain 1020-1 ... 66 3e-08
gb|AF223396.1|AF223396 Neisseria gonorrhoeae strain 1245-1 ... 66 3e-08
emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A... 66 3e-08
emb|AL162757.2|NMA6Z2491 Neisseria meningitidis serogroup A... 66 3e-08
emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A... 66 3e-08
emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A... 66 3e-08
emb|X65487.1|PS23SRRN P.shigelloides gene for 23S rRNA 66 3e-08
emb|X67300.1|NM23SRRNA N.meningitidis gene for 23S rRNA 66 3e-08
emb|X67293.1|NG23SRRNA N.gonorrhoeae gene for 23S rRNA 66 3e-08
emb|X87281.1|AH23S3018 A.hydrophila 23S rRNA gene 66 3e-08
gb|AF362022.1|AF362022 Acidithiobacillus ferrooxidans strai... 64 1e-07
gb|AF167988.1|AF167988 Bartonella vinsonii subsp. berkhoffi... 64 1e-07
gb|U18089.1|TFU18089 Thiobacillus ferrooxidans 16S rRNA gen... 64 1e-07
emb|X87282.1|AF23S3003 A.faecalis 23S rRNA gene 64 1e-07
gb|AF362021.1|AF362021 Acidithiobacillus thiooxidans strain... 60 2e-06
gb|AF263556.1|AF263556 Secondary endosymbiont of Aphalaroid... 60 2e-06
gb|AF129499.1|AF129499 Buchnera aphidicola natural-host Sch... 60 2e-06
gb|AE006010.1| Caulobacter crescentus section 336 of 359 o... 58 6e-06
gb|AE005930.1| Caulobacter crescentus section 256 of 359 o... 58 6e-06
gb|AF091800.1|AF091800 Rhizobium tropici strain CCT 4160T 1... 58 6e-06
gb|AF091796.1|AF091796 Agrobacterium rhizogenes strain CCT ... 58 6e-06
gb|AF091794.1|AF091794 Agrobacterium rhizogenes strain CCT ... 58 6e-06
gb|AF268221.2|AF268221 Uncultured proteobacterium EBAC46D07... 58 6e-06
gb|AF268216.2|AF268216 Uncultured proteobacterium EBAC39D12... 58 6e-06
gb|AF239245.1|AF239245 Methylobacterium extorquens 23S ribo... 58 6e-06
gb|AF184909.1|AF184909 Uncultured Methylobacterium-like sp.... 58 6e-06
gb|AF209075.1|AF209075 Agrobacterium radiobacter strain K84... 58 6e-06
gb|AF209073.1|AF209073 Agrobacterium tumefaciens strain 8/1... 58 6e-06
gb|AF208479.1|AF208479 Rhizobium tropici 23S ribosomal RNA ... 58 6e-06
gb|AF207783.1|AF207783 Rhizobium galegae strain LMG 6214 23... 58 6e-06
gb|AF263558.1|AF263558 Secondary endosymbiont of Blastopsyl... 58 6e-06
gb|AE002551.2|AE002551 Neisseria meningitidis serogroup B s... 58 6e-06
gb|AE002516.1|AE002516 Neisseria meningitidis serogroup B s... 58 6e-06
gb|AE002387.1|AE002387 Neisseria meningitidis serogroup B s... 58 6e-06
gb|AE002365.1|AE002365 Neisseria meningitidis serogroup B s... 58 6e-06
emb|Y15288.1|AEJK223SR Acetobacter europaeus 23S rRNA gene 58 6e-06
emb|X89812.1|AX23SRRNA Acetobacter xylinus DNA for 23S ribo... 58 6e-06
emb|X87288.1|BD23S1635 B.diminuta 23S rRNA gene 58 6e-06
emb|Y14680.1|AI23SRRNA Acetobacter intermedius 23S rRNA gene 58 6e-06
emb|X89771.1|AE23SRRNA A.europaeus DNA for 23S ribosomal RN... 58 6e-06
gb|AF208483.1|AF208483 Agrobacterium rubi 23S ribosomal RNA... 56 2e-05
emb|AL646081.1|AL646081 Ralstonia solanacearum GMI1000 mega... 56 2e-05
emb|AL646073.1|AL646073 Ralstonia solanacearum GMI1000 chro... 56 2e-05
emb|AL646072.1|AL646072 Ralstonia solanacearum GMI1000 chro... 56 2e-05
emb|AL646064.1|AL646064 Ralstonia solanacearum GMI1000 chro... 56 2e-05
emb|AJ302313.1|BSP302313 Burkholderia sp. STM678 partial 23... 56 2e-05
gb|AF031936.1|AF031936 Pasteurella haemolytica 16S-23S inte... 56 2e-05
gb|AF012421.1|AF012421 Ralstonia pickettii strain PD1515 23... 56 2e-05
gb|AF012420.1|AF012420 Ralstonia solanacearum strain PD2762... 56 2e-05
gb|AF012419.1|AF012419 Ralstonia solanacearum strain PD1450... 56 2e-05
gb|AF012418.1|AF012418 Ralstonia solanacearum strain PD1449... 56 2e-05
gb|AF012417.1|AF012417 Ralstonia solanacearum strain PD1445... 56 2e-05
gb|AF012416.1|AF012416 Ralstonia solanacearum strain PD278 ... 56 2e-05
emb|Y18705.1|BVI18705 Burkholderia vietnamiensis 23S rRNA g... 56 2e-05
emb|Y18704.1|BMU18704 Burkholderia multivorans 23S rRNA gen... 56 2e-05
emb|X88894.1|ZR23SRRNA Z.ramigera DNA for 23S ribosomal RNA 56 2e-05
emb|X87292.1|TC23S5495 T.cuprinus 23S rRNA gene 56 2e-05
emb|X75567.1|TCRNA23S T.cuprinus gene for 23S ribosomal RNA 56 2e-05
emb|X16368.1|PC23RRNA Pseudomonas cepacia gene for 23S ribo... 56 2e-05
emb|Y17184.1|BPY17184 Burkholderia pseudomallei 23S rRNA gene 56 2e-05
emb|X68323.1|BPG23S B.pertussis gene for 23S ribosomal RNA 56 2e-05
emb|X68368.1|BP23SRRA B.parapertussis gene for 23S ribosoma... 56 2e-05
emb|Y17183.1|BMY17183 Burkholderia mallei 23S rRNA gene 56 2e-05
emb|Y17182.1|BGY17182 Burkholderia gladioli 23S rRNA gene 56 2e-05
emb|X70371.1|BB23SRRA B.bronchiseptica gene for 23S rRNA 56 2e-05
gb|AE009481.1|AE009481 Brucella melitensis strain 16M chrom... 54 1e-04
gb|AE009462.1|AE009462 Brucella melitensis strain 16M chrom... 54 1e-04
gb|AE009657.1|AE009657 Brucella melitensis strain 16M chrom... 54 1e-04
gb|AF220149.1|AF220149 Brucella melitensis ribosomal RNA op... 54 1e-04
gb|AF220148.1|AF220148 Brucella melitensis ribosomal RNA op... 54 1e-04
gb|AF220147.1|AF220147 Brucella melitensis ribosomal RNA op... 54 1e-04
gb|AF191073.1|AF191073 Stealth virus 1 clone 3B43, genomic ... 54 1e-04
gb|AF272630.1|AF272630 Ureaplasma urealyticum strain ATCC 3... 52 4e-04
gb|AF272629.1|AF272629 Ureaplasma urealyticum strain ATCC 2... 52 4e-04
gb|AF272628.1|AF272628 Ureaplasma urealyticum strain ATCC 2... 52 4e-04
gb|AF272623.1|AF272623 Ureaplasma urealyticum strain ATCC 2... 52 4e-04
gb|AF272617.1|AF272617 Ureaplasma urealyticum strain ATCC 3... 52 4e-04
gb|AF272616.1|AF272616 Ureaplasma urealyticum strain ATCC 2... 52 4e-04
gb|AF272615.1|AF272615 Ureaplasma urealyticum strain ATCC 2... 52 4e-04
gb|AF272607.1|AF272607 Ureaplasma urealyticum strain ATCC 2... 52 4e-04
gb|AE002127.1|AE002127 Ureaplasma urealyticum section 28 of... 52 4e-04
gb|AE002112.1|AE002112 Ureaplasma urealyticum section 13 of... 52 4e-04
gb|AF129500.1|AF129500 Buchnera aphidicola natural-host Mel... 52 4e-04
emb|AL139076.2|CJ11168X3 Campylobacter jejuni NCTC11168 com... 52 4e-04
emb|AL139075.2|CJ11168X2 Campylobacter jejuni NCTC11168 com... 52 4e-04
emb|AL139074.2|CJ11168X1 Campylobacter jejuni NCTC11168 com... 52 4e-04
emb|Z29326.1|CJ16SRNA C.jejuni TGH9011(ATCC43431) gene for ... 52 4e-04
dbj|AB003380.1|AB003380 Fibrobacter succinogenes DNA for 23... 52 4e-04
gb|AF416765.1|AF416765 Ehrlichia chaffeensis strain Arkansa... 50 0.002
gb|AF091798.1|AF091798 Rhizobium tropici strain CCT 4164 16... 50 0.002
gb|AF091792.1|AF091792 Rhizobium leguminosarum strain CCT 5... 50 0.002
gb|AF091790.1|AF091790 Rhizobium leguminosarum strain CCT 4... 50 0.002
gb|AF091788.1|AF091788 Rhizobium leguminosarum strain CCT 4... 50 0.002
gb|AF268236.2|AF268236 Uncultured proteobacterium EBAC37G09... 50 0.002
gb|AF239246.1|AF239246 Bradyrhizobium sp. USDA4362 23S ribo... 50 0.002
gb|AF184910.1|AF184910 Bradyrhizobium sp. USDA 4377 23S rib... 50 0.002
gb|AF209072.1|AF209072 Agrobacterium tumefaciens strain K27... 50 0.002
gb|AF208480.1|AF208480 Agrobacterium rhizogenes 23S ribosom... 50 0.002
gb|AF207785.1|AF207785 Rhizobium leguminosarum strain LMG 8... 50 0.002
gb|AF207782.1|AF207782 Rhizobium leguminosarum 23S ribosoma... 50 0.002
emb|AJ130894.1|HSA130894 Homo sapiens mRNA for transcriptio... 50 0.002
gb|AF223397.1|AF223397 Neisseria gonorrhoeae strain 1199-1 ... 50 0.002
gb|L77146.1|ZEFHSC7R Danio rerio heat shock cognate (hsc70)... 50 0.002
gb|AF184626.1|AF184626 Rhodopseudomonas palustris ribosomal... 50 0.002
gb|AF184625.1|AF184625 Rhodopseudomonas palustris ribosomal... 50 0.002
gb|U09230.1|BAU09230 Buchnera aphidicola shikimate dehydrog... 50 0.002
gb|AF053405.1|AF053405 Mus musculus 50 0.002
emb|X71839.1|RP23SRRN R.palustris 16S rRNA gene 50 0.002
emb|AJ005014.1|NSLAJ5014 Nitrobacter sp. 23S rRNA gene, str... 50 0.002
emb|AJ005008.1|NSDAJ5008 Nitrobacter sp. 23S rRNA gene, str... 50 0.002
emb|AJ005013.1|RPAJ5013 Rhodopseudomonas palustris 23S rRNA... 50 0.002
emb|AJ005012.1|NVAJ5012 Nitrobacter vulgaris 23S rRNA gene 50 0.002
emb|AJ005010.1|NWAJ5010 Nitrobacter winogradskyi 23S rRNA gene 50 0.002
emb|AJ005011.1|NHAJ5011 Nitrobacter hamburgensis 23S rRNA gene 50 0.002
emb|AJ005009.1|ANAJ5009 Nitrobacter agilis 23S rRNA gene 50 0.002
emb|X79704.1|CB23SRR C.burnetii 23Sr RNA gene 50 0.002
emb|X87290.1|RR23S170S R.rubrum 23S rRNA gene 50 0.002
dbj|D87747.1|D87747 Mus musculus mRNA for murine CXCR-4, co... 50 0.002
gb|AF459639.1| Triticum monococcum BAC clones 116F2 and 115... 48 0.006
gb|AE009348.1|AE009348 Agrobacterium tumefaciens str. C58 l... 48 0.006
gb|AE009325.1|AE009325 Agrobacterium tumefaciens str. C58 l... 48 0.006
gb|AE009200.1|AE009200 Agrobacterium tumefaciens strain C58... 48 0.006
gb|AE008980.1|AE008980 Agrobacterium tumefaciens strain C58... 48 0.006
gb|AE008290.2|AE008290 Agrobacterium tumefaciens str. C58 l... 48 0.006
gb|AE008265.2|AE008265 Agrobacterium tumefaciens str. C58 l... 48 0.006
gb|AE008167.1|AE008167 Agrobacterium tumefaciens str. C58 c... 48 0.006
gb|AE007948.2|AE007948 Agrobacterium tumefaciens str. C58 c... 48 0.006
gb|AF326781.1|AF326781 Triticum monococcum actin (ACT-1) ge... 48 0.006
gb|AF272627.1|AF272627 Ureaplasma urealyticum strain ATCC 3... 48 0.006
gb|AF272625.1|AF272625 Ureaplasma urealyticum strain ATCC 2... 48 0.006
gb|AF272624.1|AF272624 Ureaplasma urealyticum strain ATCC 2... 48 0.006
gb|AF272622.1|AF272622 Ureaplasma urealyticum strain ATCC 3... 48 0.006
>gb|AF339051.1|AF339051 Triticum monococcum WIS-2-1A Ty1-copia-like retrotransposon, complete
sequence
Length = 9682
Score = 381 bits (192), Expect = e-103
Identities = 216/224 (96%)
Strand = Plus / Plus
Query: 98 aaaccactagtttcaagaagggcaagggcaaaaagggatacttcatgaaacggcaaatca 157
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||
Sbjct: 4368 aaaccactagtttcaagaagggcaagggcacaaagggatacttcatgaaaaagcaattca 4427
Query: 158 gctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtgcttctgt 217
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4428 gctgctgctctaatgaagaaacccaaggttgaacccaaacccgagactaagtgcttctgt 4487
Query: 218 aataaggggaatagccactggagcagaattaccctagatacttggtagataagaaggctg 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4488 aataaggggaatagccactggagcagaattaccctagatacttggtagataagaaggctg 4547
Query: 278 gcaaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||||||||||||||||||||||||| |||| |||| |||||
Sbjct: 4548 gcaaggtcgatagaagtatattggatatgcattatgttaatgtg 4591
>emb|X63184.1|TAWIS21A T.aestivum DNA for Wis-2-1A retrotransposon-like element
Length = 5114
Score = 373 bits (188), Expect = e-101
Identities = 215/224 (95%)
Strand = Plus / Plus
Query: 98 aaaccactagtttcaagaagggcaagggcaaaaagggatacttcatgaaacggcaaatca 157
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1882 aaaccactagtttcaagaagggcaagggcaagaagggatacttcatgaaacggcaaatca 1941
Query: 158 gctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtgcttctgt 217
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1942 gctgctgctctagtgaagaaacccgaggttgaacccaaacccgagactaagtgcttctgt 2001
Query: 218 aataaggggaatagccactggagcagaattaccctagatacttggtagataagaaggctg 277
||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 2002 aataaggggaacaaccactggagcaagattaccctagatacttggtagatgagaaggctg 2061
Query: 278 gcaaggtcgatagaagtatattggatatacattgtgttgatgtg 321
||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2062 gcaaggtcgatagaagtatattggatatacattatgttaatgtg 2105
>gb|AY013246.1| Hordeum vulgare chromosome 5 BAC 635P2, complete sequence
Length = 102433
Score = 224 bits (113), Expect = 5e-56
Identities = 205/233 (87%), Gaps = 2/233 (0%)
Strand = Plus / Minus
Query: 91 gttagtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacg 149
|||||||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||
Sbjct: 56134 gttagtaaaaccactaagtttcaagaaaggcaagggctagaagggatacttcgtgaaacg 56075
Query: 150 gcaaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagt 209
||||| ||| |||||| ||| |||||| ||||||| || |||||||||||||||||||||
Sbjct: 56074 gcaaaacagttgctgcactaatgaagagacccaagattaaacccaaacccgagactaagt 56015
Query: 210 gcttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataa 269
||||||||||| ||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 56014 gcttctgtaatgaggggaacagtcactgaggcggagcaactctagatacttggtagataa 55955
Query: 270 gaaggctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||||||| || ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 55954 gaaggctggcaaaagtcgaaagaagtatatttgatatacataatgttgatgtg 55902
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
Length = 77136
Score = 220 bits (111), Expect = 7e-55
Identities = 192/219 (87%)
Strand = Plus / Minus
Query: 91 gttagtaaaaccactagtttcaagaagggcaagggcaaaaagggatacttcatgaaacgg 150
|||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
Sbjct: 70556 gttagtaaaaccactagtttcaagaagggcaagggctagatgggatacttcatgaaacag 70497
Query: 151 caaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtg 210
|||| ||| || ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 70496 caaaccagttgttgctctaatgaagaaacccaagattgaacccaaacccgagactaagtg 70437
Query: 211 cttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataag 270
||||||| || |||||||| | |||| || || ||||||||||||||||||||| ||
Sbjct: 70436 cttctgtcatgaggggaatggtaactgaggcggagctaccctagatacttggtagatgag 70377
Query: 271 aaggctggcaaggtcgatagaagtatattggatatacat 309
||||||| | | ||| | |||||||||| |||||||||
Sbjct: 70376 aaggctgacgaagtcaacggaagtatatttgatatacat 70338
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 accactagtttcaagaagggcaaggg 125
||||||||||||||||| ||||||||
Sbjct: 33913 accactagtttcaagaaaggcaaggg 33938
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
Length = 261265
Score = 200 bits (101), Expect = 7e-49
Identities = 202/233 (86%), Gaps = 2/233 (0%)
Strand = Plus / Plus
Query: 91 gttagtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacg 149
|||||||||||||||| ||||| |||| ||||||||| | |||||||||||| |||||||
Sbjct: 148449 gttagtaaaaccactaagtttcgagaaaggcaagggctagaagggatacttcgtgaaacg 148508
Query: 150 gcaaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagt 209
||||| ||| |||||| ||| |||||| ||||||| || |||||||||| ||||||||||
Sbjct: 148509 gcaaaacagttgctgcactaatgaagagacccaagattaaacccaaacctgagactaagt 148568
Query: 210 gcttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataa 269
||||||||||| ||||||| || ||||| || || || |||||||||||||||||||
Sbjct: 148569 gcttctgtaatgaggggaacagtcactgaggcggagcaactctagatacttggtagataa 148628
Query: 270 gaaggctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||| ||||| || ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 148629 gaagactggcaaaagtcgagagaagtatatttgatatacatgatgttgatgtg 148681
Score = 200 bits (101), Expect = 7e-49
Identities = 199/229 (86%), Gaps = 2/229 (0%)
Strand = Plus / Minus
Query: 95 gtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacggcaa 153
|||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||||||
Sbjct: 234323 gtaaaaccactaagtttcaagaaaggcaagggctagaagggatacttcgtgaaacggcaa 234264
Query: 154 atcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtgctt 213
| ||| |||||| ||| |||||| ||||||| || |||||||||||||||||||||||||
Sbjct: 234263 aacagttgctgcactaatgaagacacccaagattaaacccaaacccgagactaagtgctt 234204
Query: 214 ctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataagaag 273
|||||| ||||||| || ||||| || || || |||||||||||||||||||||||
Sbjct: 234203 ctgtaacgaggggaacagtcactgaggcggagcaactctagatacttggtagataagaag 234144
Query: 274 gctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||| || ||| | ||||||||||| ||||||||| ||||||||||
Sbjct: 234143 gctggcaaaagtcaagagaagtatattagatatacatgatgttgatgtg 234095
Score = 176 bits (89), Expect = 1e-41
Identities = 196/229 (85%), Gaps = 2/229 (0%)
Strand = Plus / Plus
Query: 95 gtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacggcaa 153
|||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||||||
Sbjct: 246265 gtaaaaccactaagtttcaagaaaggcaagggctagaagggatacttcgtgaaacggcaa 246324
Query: 154 atcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtgctt 213
| ||| || ||| ||| |||||| ||||||| | |||||||||||||||||||||||||
Sbjct: 246325 aacagttgttgcactaatgaagagacccaagataaaacccaaacccgagactaagtgctt 246384
Query: 214 ctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataagaag 273
||||||| ||||||| | ||||| || || || | |||||||||||||||||||||
Sbjct: 246385 ctgtaatgaggggaacaatcactgaggcggagcaactcaagatacttggtagataagaag 246444
Query: 274 gctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||| || ||||| |||||| |||| ||||||||| ||||||||||
Sbjct: 246445 gctggcaaaagtcgaaagaagtgtatttgatatacatgatgttgatgtg 246493
Score = 153 bits (77), Expect = 1e-34
Identities = 196/233 (84%), Gaps = 2/233 (0%)
Strand = Plus / Minus
Query: 91 gttagtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacg 149
|||||||||||||||| ||||| |||| ||||||||| | |||||||||||| |||||||
Sbjct: 170810 gttagtaaaaccactaagtttcgagaaaggcaagggctagaagggatacttcgtgaaacg 170751
Query: 150 gcaaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagt 209
||||| ||| || ||| ||| |||||| |||| || || ||||||| |||| ||||||||
Sbjct: 170750 gcaaagcagttgttgcactaatgaagagaccccagattaaacccaagcccgggactaagt 170691
Query: 210 gcttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataa 269
||||||| || ||||||| | || || || || || |||||||||||||||||||
Sbjct: 170690 gcttctgctatgaggggaacggtcattgaggcggagcaactctagatacttggtagataa 170631
Query: 270 gaaggctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||||||| || ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 170630 gaaggctggcaaaagtcgaaagaagtatatttgatatacatgatgttgatgtg 170578
Score = 44.1 bits (22), Expect = 0.094
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 100 accactagtttcaagaagggcaaggg 125
||||||||||||||||| ||||||||
Sbjct: 163393 accactagtttcaagaaaggcaaggg 163368
>gb|AF474071.1| Hordeum vulgare subsp. vulgare cultivar Morex BAC clone 745c13,
complete sequence
Length = 102842
Score = 198 bits (100), Expect = 3e-48
Identities = 190/219 (86%), Gaps = 2/219 (0%)
Strand = Plus / Plus
Query: 91 gttagtaaaaccactagtttcaagaagggcaagggcaaaaagggatacttcatgaaacgg 150
||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct: 93861 gttagtaaaaccactagtttcaagaag--caagggctagaagggatacttcatgaaacga 93918
Query: 151 caaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtg 210
|||| ||| |||||||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct: 93919 caaaccagttgctgctctaatgaagaaacccaggattgaacccaaacccgagactaagtg 93978
Query: 211 cttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataag 270
|||||| || ||||||| | ||||| || || |||||||||| |||||| |||||
Sbjct: 93979 attctgttatgaggggaacggtcactgaggcggagctaccctagatgcttggttgataat 94038
Query: 271 aaggctggcaaggtcgatagaagtatattggatatacat 309
||||||||||| |||| | ||||||||| |||||||||
Sbjct: 94039 aaggctggcaaagtcggcataagtatatttgatatacat 94077
Score = 180 bits (91), Expect = 6e-43
Identities = 197/231 (85%), Gaps = 1/231 (0%)
Strand = Plus / Minus
Query: 92 ttagtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacgg 150
||||||||||||||| |||||| ||| ||||||||| | |||||||||||| |||||| |
Sbjct: 61678 ttagtaaaaccactaagtttcatgaaaggcaagggctagaagggatacttcgtgaaacag 61619
Query: 151 caaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtg 210
|||| ||| |||||| ||| |||||| ||||||| | |||||||||| |||||||||||
Sbjct: 61618 caaaacagttgctgcactaatgaagagacccaagtctaaacccaaaccggagactaagtg 61559
Query: 211 cttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataag 270
||||||| || ||||||| | ||||| || || |||||||||| |||||||||||||
Sbjct: 61558 cttctgttatgaggggaacggtcactgaggcggagctaccctagatgcttggtagataag 61499
Query: 271 aaggctggcaaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||||||| ||||| || |||||||| ||||||||| ||||||||||
Sbjct: 61498 taggctggcaaagtcgaaagtagtatatttgatatacatgatgttgatgtg 61448
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 100 accactagtttcaagaagggcaagggcaaaaag 132
||||||||||||||||| |||||||| ||||||
Sbjct: 23202 accactagtttcaagaaaggcaagggtaaaaag 23234
>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
sequence
Length = 113510
Score = 168 bits (85), Expect = 2e-39
Identities = 198/233 (84%), Gaps = 2/233 (0%)
Strand = Plus / Minus
Query: 91 gttagtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacg 149
|||||||||||||||| |||||||||| ||| ||||| | |||||||||||| |||||||
Sbjct: 70684 gttagtaaaaccactaagtttcaagaaaggcgagggctagaagggatacttcgtgaaacg 70625
Query: 150 gcaaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagt 209
||||| ||| || ||| ||| |||||| ||||||| || |||||||| ||||||||||||
Sbjct: 70624 gcaaaacagttgttgcgctaatgaagagacccaagattaaacccaaaaccgagactaagt 70565
Query: 210 gcttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataa 269
||||||||||| ||||||| || |||| || || || |||||||||||||||||||
Sbjct: 70564 gcttctgtaatgaggggaacagtcactaaggcggagcaactctagatacttggtagataa 70505
Query: 270 gaaggctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
| ||||||| || ||||| |||| |||||| ||||||||| ||||||||||
Sbjct: 70504 gtgggctggcaaaagtcgaaagaaatatatttgatatacatgatgttgatgtg 70452
Score = 145 bits (73), Expect = 3e-32
Identities = 195/233 (83%), Gaps = 2/233 (0%)
Strand = Plus / Minus
Query: 91 gttagtaaaaccactag-tttcaagaagggcaagggcaaaaagggatacttcatgaaacg 149
|||||||||||||||| |||| ||| ||||||||| | |||||||||||| |||||||
Sbjct: 112613 gttagtaaaaccactaaatttcgggaaaggcaagggctagaagggatacttcgtgaaacg 112554
Query: 150 gcaaatcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagt 209
||||| ||| ||| || ||| |||||| |||| || || ||||||| |||| ||||||||
Sbjct: 112553 gcaaagcagttgcagcactaatgaagagaccccagattaaacccaagcccgggactaagt 112494
Query: 210 gcttctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataa 269
|||||||| || ||||||| | ||||| || || || |||||||||||||||||||
Sbjct: 112493 gcttctgttatgaggggaacggtcactgaggcggagcaactctagatacttggtagataa 112434
Query: 270 gaaggctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
||||| |||| || ||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 112433 gaaggttggcaaaagtcgaaagaagtatatttgatatacatgatgttgatgtg 112381
>emb|AJ279072.1|HVU279072 Hordeum vulgare BARE-2 and partial BAGY-2 retrotransposons
Length = 19906
Score = 168 bits (85), Expect = 2e-39
Identities = 195/229 (85%), Gaps = 2/229 (0%)
Strand = Plus / Plus
Query: 95 gtaaaaccacta-gtttcaagaagggcaagggcaaaaagggatacttcatgaaacggcaa 153
|||||||||||| |||||||||| ||||||||| | |||||||||||| |||||||||||
Sbjct: 7270 gtaaaaccactaagtttcaagaaaggcaagggctagaagggatacttcgtgaaacggcaa 7329
Query: 154 atcagctgctgctctagtgaagaaacccaaggttgaacccaaacccgagactaagtgctt 213
| ||| |||||| ||| |||||| |||||| || |||||||||||||||||||||||||
Sbjct: 7330 aacagttgctgcactaatgaagagacccaatattaaacccaaacccgagactaagtgctt 7389
Query: 214 ctgtaataaggggaatagccactggagcagaattaccctagatacttggtagataagaag 273
| ||||| ||||||| | ||||| || || || | ||||||||||||||||||| |
Sbjct: 7390 ccgtaatgaggggaacaatcactgaggcggagcaactcaagatacttggtagataagatg 7449
Query: 274 gctggc-aaggtcgatagaagtatattggatatacattgtgttgatgtg 321
|||||| || ||||| |||||| |||| ||||||||| ||||||||||
Sbjct: 7450 gctggcaaaagtcgaaagaagtgtatttgatatacatgatgttgatgtg 7498
>gb|AE008895.1|AE008895 Salmonella typhimurium LT2, section 203 of 224 of the complete genome
Length = 25597
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10389 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 10441
>gb|AE008893.1|AE008893 Salmonella typhimurium LT2, section 201 of 224 of the complete genome
Length = 20178
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10673 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 10725
>gb|AE008886.1|AE008886 Salmonella typhimurium LT2, section 194 of 224 of the complete genome
Length = 21018
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 10517
>gb|AE008881.1|AE008881 Salmonella typhimurium LT2, section 189 of 224 of the complete genome
Length = 21570
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18433 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 18485
>gb|AE008856.1|AE008856 Salmonella typhimurium LT2, section 164 of 224 of the complete genome
Length = 20382
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 19879 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 19827
>gb|AE008820.1|AE008820 Salmonella typhimurium LT2, section 128 of 224 of the complete genome
Length = 21722
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 19212 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 19160
>gb|AE008706.1|AE008706 Salmonella typhimurium LT2, section 14 of 224 of the complete genome
Length = 21381
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11617 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 11669
>gb|AE005632.1|AE005632 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 251 of
290
Length = 11155
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8534 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 8586
>gb|AE005629.1|AE005629 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 248
of 290
Length = 11278
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 752
>gb|AE005607.1|AE005607 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 226 of
290
Length = 10734
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6860 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 6912
>gb|AE005555.1|AE005555 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 174 of
290
Length = 10387
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3151 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3099
>gb|AE005489.1|AE005489 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 108 of
290
Length = 11567
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6191 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 6139
>gb|AE005196.1|AE005196 Escherichia coli O157:H7 EDL933 genome, contig 1 of 3, section 20
of 155
Length = 11477
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 532
>gb|AE000474.1|AE000474 Escherichia coli K12
Length = 14833
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2531 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 2583
>gb|AE000471.1|AE000471 Escherichia coli K12
Length = 11679
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5583 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 5635
>gb|AE000461.1|AE000461 Escherichia coli K12
Length = 12724
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 527
>gb|AE000406.1|AE000406 Escherichia coli K12
Length = 10747
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5185 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 5133
>gb|AE000345.1|AE000345 Escherichia coli K12
Length = 11628
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6189 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 6137
>gb|AE000129.1|AE000129 Escherichia coli K12
Length = 11005
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6092 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 6144
>emb|AL627282.1|AL627282 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
complete chromosome; segment 18/20
Length = 234050
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 21745 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 21797
>emb|AL627280.1|AL627280 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
complete chromosome; segment 16/20
Length = 245050
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18655 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 18603
>emb|AL627279.1|AL627279 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
complete chromosome; segment 15/20
Length = 264050
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 133654 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 133602
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 91599 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 91547
>emb|AL627278.1|AL627278 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
complete chromosome; segment 14/20
Length = 258050
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 215188 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 215136
>emb|AL627276.1|AL627276 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
complete chromosome; segment 12/20
Length = 274050
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 13126 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 13074
>emb|AL627266.1|AL627266 Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
complete chromosome; segment 2/20
Length = 268050
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 38732 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 38784
>gb|AF170176.1|STYSTMF1 Salmonella typhimurium LT2 clone STMF1 strain SGSC1412
Length = 43339
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 41685 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 41737
>gb|AF146763.1|AF146763 Klebsiella oxytoca 800.98 23S ribosomal RNA gene, partial sequence
Length = 282
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgtgaactcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 281
>gb|AF233324.1|STYSTMD1 Salmonella typhimurium LT2 clone STMD1 strain SGSC1412
Length = 96086
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 94432 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 94484
>gb|AF053968.1|AF053968 Escherichia coli strain A 8190 rrlC operon, complete sequence
Length = 2905
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|AF053967.1|AF053967 Escherichia coli strain ECOR 24 rrlB operon, complete sequence
Length = 2904
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|AF053966.1|AF053966 Escherichia coli rrlD operon, complete sequence
Length = 2903
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|AF053965.1|AF053965 Escherichia coli strain ECOR 40 rrlB operon, complete sequence
Length = 2902
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|AF053964.1|AF053964 Escherichia coli strain ECOR 52 rrlD operon, complete sequence
Length = 2904
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|AF053963.1|AF053963 Escherichia coli strain ECOR 35 rrlC operon, complete sequence
Length = 2905
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U18997.1|ECOUW67 Escherichia coli K-12 chromosomal region from 67.4 to 76.0 minutes
Length = 372438
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 207172 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 207120
>emb|AJ278710.1|ECO278710 Escherichia coli 23S rRNA gene, strain K12 DSM 30083T
Length = 2900
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 407
>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes
Length = 176195
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 75642 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 75694
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 34240 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 34292
>gb|U77929.1|SEU77929 Salmonella enterica V 1,6,14,25:a:e,n,x 23S ribosomal RNA (rrl)
gene, complete sequence
Length = 2908
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77928.1|CFU77928 Citrobacter freundii 23S ribosomal RNA (rrl) gene, complete
sequence
Length = 2906
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgaactcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77927.1|SBU77927 Salmonella bongori 66:z41:- 23S ribosomal RNA (rrl) gene, complete
sequence
Length = 2906
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77926.1|SEU77926 Salmonella enterica IV 43:z4,z23:- 23S ribosomal RNA (rrl) gene,
complete sequence
Length = 2908
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77924.1|SEU77924 Salmonella enterica IIIa 51:z4,z23:- 23S ribosomal RNA (rrl) gene,
complete sequence
Length = 2906
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77923.1|SEU77923 Salmonella enterica IIIa 23S ribosomal RNA (rrl) gene, complete
sequence
Length = 2906
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77922.1|SEU77922 Salmonella enterica IIIb 61:i:z 23S ribosomal RNA (rrl) gene,
complete sequence
Length = 2906
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77921.1|SEU77921 Salmonella enterica II 1,9,12:1,w:e,n,x 23S ribosomal RNA (rrl)
gene, complete sequence
Length = 2906
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77920.1|SEU77920 Salmonella enterica 1,4,[5],12,:i:1,2 23S ribosomal RNA (rrl) gene,
complete sequence
Length = 2908
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|U77919.1|SEU77919 Salmonella enterica 23S ribosomal RNA (rrl) gene, complete sequence
Length = 2908
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|J01695.1|ECORGNB E.coli rRNA operon (rrnB) coding for Glu-tRNA-2, 5S, 16S and 23S rRNA
Length = 7508
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3909
>gb|U72488.1|CVU72488 Cloning vector pRNA8
Length = 11918
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 8132 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 8080
>gb|U70214.1|ECU70214 Escherichia coli chromosome minutes 4-6
Length = 123171
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 57191 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 57243
>dbj|AB035926.1|AB035926 Escherichia coli O157:H7 yaeD, rrsH, ileV, alaV, rrlH, rrfH, aspU,
yafB genes for phosphatase, 16S rRNA, isoleucine tRNA 1B,
alanine tRNA 1B, 23S rRNA, 5S rRNA, aspartate tRNA 1,
aldose reductase, complete and partial cds
Length = 7017
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3349 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3401
>dbj|AB035925.1|AB035925 Escherichia coli O157:H7 clpB, rrsG, gltW, rrlG, rrfG, kgtP genes for
heat shock protein, 16S rRNA, glutamate tRNA 2, 23S rRNA,
5S rRNA, alpha-ketoglutarate permease, partial cds
Length = 6829
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3225 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3277
>dbj|AB035924.1|AB035924 Escherichia coli O157:H7 purH, rrsE, gltV, rrlE, rrfE, yjaB, metA
genes for phosphoribosyl aminoimiddazol carboxamide
formyltransferase, 16S rRNA, glutamate tRNA 2, 23S rRNA,
5S rRNA, hypothetical protein, homoserine
transsuccinylase, partial and compl>
Length = 6811
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3201 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3253
>dbj|AB035923.1|AB035923 Escherichia coli O157:H7 yrdA, rrsD, ileU, alaU, rrlD, rrfD, thrV,
rrfF genes for transferase, 16S rRNA, isoleucine tRNA 1,
alanine tRNA 1B, 23S rRNA, 5S rRNA, threonine tRNA 1, 5S
rRNA, partial cds
Length = 6560
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3336 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3388
>dbj|AB035922.1|AB035922 Escherichia coli O157:H7 yieP, rrsC, gltU, rrlC, rrfC, astP, trpT,
yifA genes for hypothetical protein, 16S rRNA, glutamate
tRNA 2, 23S rRNA, 5S rRNA, aspartate tRNA 1, tryptophan
tRNA, hypothetical protein, partial cds
Length = 6851
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3232 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3284
>dbj|AB035921.1|AB035921 Escherichia coli O157:H7 murI, rrsB, gltT, rrlB, rrfB, murB genes for
glutamate racemase, 16S rRNA, glutamate tRNA 2, 23S rRNA,
5S rRNA, UDP-N-acetyl enolpyruvoyl glucosamine reductase,
partial cds
Length = 6903
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3261 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3313
>dbj|AB035920.1|AB035920 Escherichia coli O157:H7 hemG, rrsA, ileT, alaT, rrlA, rrfA, mobB,
mobA genes for protoporphyrin oxidase protein, 16S rRNA,
isoleucine tRNA 1, alanine tRNA 1B, 23S rRNA, 5S rRNA,
molybdopterin-guanine dinucleotide biosynthesis protein
B, molybdopterin->
Length = 7003
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3309 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3361
>dbj|AP002567.1|AP002567 Escherichia coli O157:H7 DNA, complete genome, section 18/20
Length = 318703
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 251307 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 251359
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 66100 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 66152
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 210281 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 210333
>dbj|AP002566.1|AP002566 Escherichia coli O157:H7 DNA, complete genome, section 17/20
Length = 280900
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 250456 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 250508
>dbj|AP002564.1|AP002564 Escherichia coli O157:H7 DNA, complete genome, section 15/20
Length = 307962
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 250131 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 250079
>dbj|AP002562.1|AP002562 Escherichia coli O157:H7 DNA, complete genome, section 13/20
Length = 270365
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74647 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 74595
>dbj|AP002550.1|AP002550 Escherichia coli O157:H7 DNA, complete genome, section 1/20
Length = 281530
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 229447 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 229499
>emb|X87284.1|KP23S1388 K.pneumoniae 23S rRNA gene, ATCC 13883 T
Length = 2903
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgaactcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>gb|M87049.1|ECOUW85 E. coli genomic sequence of the region from 84.5 to 86.5 minutes
Length = 91414
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 90927 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 90979
>dbj|D90887.1|D90887 E.coli genomic DNA, Kohara clone #437(58.6-59.0 min.)
Length = 16772
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 6977 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 6925
>dbj|D90886.1|D90886 E.coli genomic DNA, Kohara clone #436(58.4-58.8 min.)
Length = 16446
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 14130 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 14078
>dbj|D83536.2|ECOTSF Escherichia coli genomic DNA. (4.1 - 6.1 min)
Length = 91430
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 35664 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 35716
>emb|V00348.1|ECRRNBZ E. coli ribosomal operon rrnB encoding the 16S ribosomal RNA. Also
transfer RNA specific for Glu, 23S ribosomal RNA and two
unidentified open reading frames. This sequence was
obtained from the transducing phage lambda-rif-d 18
(BAMHI fragment)
Length = 7508
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3857 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 3909
>emb|V00331.1|ECRNA3 E. coli gene rrnB (codes for 23S ribosomal RNA)
Length = 2904
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 410
>dbj|D12649.1|ECORRNH E.coli rrnH gene for rRNAs and tRNAs
Length = 4481
Score = 97.6 bits (49), Expect = 7e-18
Identities = 52/53 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 1725
>gb|M25458.1|ECORR23S E.coli 23S rRNA
Length = 542
Score = 95.6 bits (48), Expect = 3e-17
Identities = 51/52 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatgggg 70
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatgggg 409
>gb|AE005616.1|AE005616 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 235 of
290
Length = 11332
Score = 93.7 bits (47), Expect = 1e-16
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 21 tgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 tgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 2618
>gb|AE000453.1|AE000453 Escherichia coli K12
Length = 14325
Score = 93.7 bits (47), Expect = 1e-16
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggg 69
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggg 470
>gb|L10328.1|ECOUW82 E. coli; the region from 81.5 to 84.5 minutes
Length = 136254
Score = 93.7 bits (47), Expect = 1e-16
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggg 69
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 133445 tgtgagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggg 133495
>gb|K01058.1|ECOTGI13 E.coli 23s rrna gene (partial)
Length = 630
Score = 91.7 bits (46), Expect = 4e-16
Identities = 49/50 (98%)
Strand = Plus / Plus
Query: 22 gagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
|||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 gagctcgatgagtagggcgggacacgtggtatcctgtctgaatatggggg 192
>gb|AF263562.1|AF263562 Secondary endosymbiont of Heteropsylla texana 16S ribosomal RNA gene,
partial sequence; intergenic spacer, complete sequence;
and 23S ribosomal RNA gene, partial sequence
Length = 4572
Score = 89.7 bits (45), Expect = 2e-15
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2372 tgtgaactcgaagagtagggcgggacacgtgttatcctgtctgaatatggggg 2424
>gb|AF263561.1|AF263561 secondary endosymbiont of Glycaspis brimblecombei
Length = 9906
Score = 89.7 bits (45), Expect = 2e-15
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 19 tgtgagctcgaagagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7359 tgtgaactcgaagagtagggcgggacacgtgttatcctgtctgaatatggggg 7411
>gb|AE004341.1|AE004341 Vibrio cholerae chromosome I, section 249 of 251 of the complete
chromosome
Length = 11102
Score = 73.8 bits (37), Expect = 1e-10
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 31 gagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 5276 gagtagggcgggacacgtgatatcctgtctgaatatggggg 5236
>gb|AE004340.1|AE004340 Vibrio cholerae chromosome I, section 248 of 251 of the complete
chromosome
Length = 12224
Score = 73.8 bits (37), Expect = 1e-10
Identities = 40/41 (97%)
Strand = Plus / Minus
Query: 31 gagtagggcgggacacgtggtatcctgtctgaatatggggg 71
||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11693 gagtagggcgggacacgtgatatcctgtctgaatatggggg 11653
>