The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F16_T7.seq Fgr-S3_1_F16_T7 LENGTH:195bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F16 ; CLONELIB: n/a
(195 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC093620.3| Homo sapiens chromosome 7 clone RP13-901C16,... 48 0.003
emb|AJ242726.1|XLA242726 Xenopus laevis mRNA for p21 activa... 42 0.20
emb|Y10472.1|NTODC N.tabacum mRNA for ornithine decarboxylase 42 0.20
ref|NM_077151.1| Caenorhabditis elegans 40 0.79
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 40 0.79
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 40 0.79
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 40 0.79
gb|AF081464.1|AF081464 Bos taurus 40 0.79
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 40 0.79
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 40 0.79
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 40 0.79
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 40 0.79
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 40 0.79
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 40 0.79
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 40 0.79
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 40 0.79
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 40 0.79
gb|U46672.1|CELF07C7 Caenorhabditis elegans cosmid F07C7 40 0.79
emb|Y11357.1|CP1A1CS C.papaya mRNA for 1-aminocyclopropane-... 40 0.79
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 0.79
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 40 0.79
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 40 0.79
gb|AF075584.1|TGFA2 Homo sapiens transforming growth factor... 38 3.1
gb|AF270320.1|AF270320 Staphylococcus epidermidis strain SR... 38 3.1
gb|AF270250.1|AF270250 Staphylococcus epidermidis strain SR... 38 3.1
emb|AL358176.22| Human DNA sequence from clone RP11-467I20 ... 38 3.1
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 3.1
emb|AL139385.12|AL139385 Human DNA sequence from clone RP11... 38 3.1
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 3.1
emb|AL138966.19|AL138966 Human DNA sequence from clone RP11... 38 3.1
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 3.1
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 3.1
dbj|AP000848.4|AP000848 Homo sapiens genomic DNA, chromosom... 38 3.1
dbj|AP000779.4|AP000779 Homo sapiens genomic DNA, chromosom... 38 3.1
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 3.1
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 3.1
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 3.1
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 3.1
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 3.1
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 3.1
>gb|AC093620.3| Homo sapiens chromosome 7 clone RP13-901C16, complete sequence
Length = 71183
Score = 48.1 bits (24), Expect = 0.003
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 168 cctccagacctgcccggcggccgc 191
||||||||||||||||||||||||
Sbjct: 68264 cctccagacctgcccggcggccgc 68241
>emb|AJ242726.1|XLA242726 Xenopus laevis mRNA for p21 activated kinase 2 (PAK2 gene)
Length = 1714
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 175 acctgcccggcggccgctcga 195
|||||||||||||||||||||
Sbjct: 33 acctgcccggcggccgctcga 13
>emb|Y10472.1|NTODC N.tabacum mRNA for ornithine decarboxylase
Length = 1616
Score = 42.1 bits (21), Expect = 0.20
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 175 acctgcccggcggccgctcga 195
|||||||||||||||||||||
Sbjct: 53 acctgcccggcggccgctcga 33
>ref|NM_077151.1| Caenorhabditis elegans
Length = 5640
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 131 caacgatcttggaggtgagc 150
||||||||||||||||||||
Sbjct: 866 caacgatcttggaggtgagc 847
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 864 gcgtggtcgcggccgaggta 845
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 547 gcgtggtcgcggccgaggta 528
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 529 gcgtggtcgcggccgaggta 510
>gb|AF081464.1|AF081464 Bos taurus
Length = 3859
Score = 40.1 bits (20), Expect = 0.79
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 172 cagacctgcccggcggccgctcga 195
|||||||||||||||| |||||||
Sbjct: 91 cagacctgcccggcgggcgctcga 68
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 57 gcgtggtcgcggccgaggta 76
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 20 gcgtggtcgcggccgaggta 39
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 32 gcgtggtcgcggccgaggta 51
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 421 gcgtggtcgcggccgaggta 402
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 702 gcgtggtcgcggccgaggta 683
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 447 gcgtggtcgcggccgaggta 428
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 302 gcgtggtcgcggccgaggta 283
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 3 gcgtggtcgcggccgaggta 22
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 425 gcgtggtcgcggccgaggta 406
>gb|U46672.1|CELF07C7 Caenorhabditis elegans cosmid F07C7
Length = 8232
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 131 caacgatcttggaggtgagc 150
||||||||||||||||||||
Sbjct: 1878 caacgatcttggaggtgagc 1859
>emb|Y11357.1|CP1A1CS C.papaya mRNA for 1-aminocyclopropane-1-carboxylate synthase
Length = 1770
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175 acctgcccggcggccgctcg 194
||||||||||||||||||||
Sbjct: 1751 acctgcccggcggccgctcg 1770
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggta 21
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggta 21
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 40.1 bits (20), Expect = 0.79
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggta 20
||||||||||||||||||||
Sbjct: 332 gcgtggtcgcggccgaggta 313
>gb|AF075584.1|TGFA2 Homo sapiens transforming growth factor alpha precursor (TGFA)
gene, exon 2 and partial cds
Length = 758
Score = 38.2 bits (19), Expect = 3.1
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Minus
Query: 170 tccagacctgccc-ggcggccgctcga 195
||||||||||||| |||||||||||||
Sbjct: 38 tccagacctgcccgggcggccgctcga 12
>gb|AF270320.1|AF270320 Staphylococcus epidermidis strain SR1 clone step.4007g09 genomic
sequence
Length = 2019
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 118 tgaacgagcttatcaacga 136
|||||||||||||||||||
Sbjct: 1428 tgaacgagcttatcaacga 1410
>gb|AF270250.1|AF270250 Staphylococcus epidermidis strain SR1 clone step.1056e08 genomic
sequence
Length = 3044
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 118 tgaacgagcttatcaacga 136
|||||||||||||||||||
Sbjct: 322 tgaacgagcttatcaacga 304
>emb|AL358176.22| Human DNA sequence from clone RP11-467I20 on chromosome 1, complete
sequence [Homo sapiens]
Length = 184311
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 agtttttaacaaagcttac 76
|||||||||||||||||||
Sbjct: 99934 agtttttaacaaagcttac 99952
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>emb|AL139385.12|AL139385 Human DNA sequence from clone RP11-90L1 on chromosome 13, complete
sequence [Homo sapiens]
Length = 177392
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 ttttaacaaagcttacctt 79
|||||||||||||||||||
Sbjct: 132217 ttttaacaaagcttacctt 132235
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 153 gcgtggtcgcggccgaggt 135
>emb|AL138966.19|AL138966 Human DNA sequence from clone RP11-380N8 on chromosome 13, complete
sequence [Homo sapiens]
Length = 171160
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 61 ttttaacaaagcttacctt 79
|||||||||||||||||||
Sbjct: 20408 ttttaacaaagcttacctt 20390
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 21 gcgtggtcgcggccgaggt 39
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AP000848.4|AP000848 Homo sapiens genomic DNA, chromosome 11q, clone:RP11-775D16, complete
sequence
Length = 186962
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgagcttgagtttttaaca 68
|||||||||||||||||||
Sbjct: 42812 tgagcttgagtttttaaca 42830
>dbj|AP000779.4|AP000779 Homo sapiens genomic DNA, chromosome 11q clone:RP11-822I2, complete
sequence
Length = 196606
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 tgagcttgagtttttaaca 68
|||||||||||||||||||
Sbjct: 181161 tgagcttgagtttttaaca 181179
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 2 gcgtggtcgcggccgaggt 20
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 55 gcgtggtcgcggccgaggt 37
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 3.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcgtggtcgcggccgaggt 19
|||||||||||||||||||
Sbjct: 102 gcgtggtcgcggccgaggt 84
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 405,093
Number of Sequences: 1217082
Number of extensions: 405093
Number of successful extensions: 27606
Number of sequences better than 10.0: 40
length of query: 195
length of database: 5,500,847,177
effective HSP length: 20
effective length of query: 175
effective length of database: 5,476,505,537
effective search space: 958388468975
effective search space used: 958388468975
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)