The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_F17_T7.seq Fgr-S3_1_F17_T7 LENGTH:480bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F17 ; CLONELIB: n/a
(480 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 44 0.13
gb|AC092874.2| Sus scrofa clone RP44-326F1, complete sequence 42 0.52
gb|AC096883.2| Sus scrofa clone RP44-276G17, complete sequence 42 0.52
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 42 0.52
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 42 0.52
emb|AL445201.14|AL445201 Human DNA sequence from clone RP11... 42 0.52
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 42 0.52
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 42 0.52
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 42 0.52
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 42 0.52
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 42 0.52
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 42 0.52
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 42 0.52
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 42 0.52
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 42 0.52
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 42 0.52
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 42 0.52
gb|AC092437.4| Homo sapiens BAC clone RP11-326I19 from 4, c... 40 2.1
ref|NM_125979.1| Arabidopsis thaliana chromosome 5 clone CH... 40 2.1
gb|AY075510.1| Drosophila melanogaster map 89E10-89E10 stra... 40 2.1
gb|AY070646.1| Drosophila melanogaster map 89E10-89E10 stra... 40 2.1
gb|AC093135.2| Pan troglodytes clone RP43-100O17, complete ... 40 2.1
gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome ... 40 2.1
gb|AE003715.1|AE003715 Drosophila melanogaster genomic scaf... 40 2.1
gb|AC004945.1|AC004945 Homo sapiens chromosome 7 clone RP5-... 40 2.1
gb|AC007298.17|AC007298 Homo sapiens 12q22 BAC RPCI11-256L6... 40 2.1
gb|AF079255.1|AF079255 Ischaemum santapaui 40 2.1
emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome ... 40 2.1
dbj|AB020743.1|AB020743 Arabidopsis thaliana genomic DNA, c... 40 2.1
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 40 2.1
gb|AC011385.6| Homo sapiens chromosome 5 clone CTB-15L17, c... 38 8.2
gb|AF483544.1| Oncorhynchus mykiss clone B21 VHSV-induced m... 38 8.2
gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7... 38 8.2
gb|AC022387.8| Homo sapiens chromosome 10 clone RP11-111N20... 38 8.2
gb|AC113340.2| Homo sapiens chromosome 5 clone CTB-164L20, ... 38 8.2
gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, c... 38 8.2
gb|AC055860.13| Homo sapiens chromosome 11, clone RP11-195O... 38 8.2
gb|AC079436.2| Rattus norvegicus chromosome 4 clone RP31-10... 38 8.2
gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, c... 38 8.2
gb|AC011251.5|AC011251 Drosophila melanogaster, chromosome ... 38 8.2
gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-... 38 8.2
gb|U14003.1|ECOUW93 Escherichia coli K-12 chromosomal regio... 38 8.2
gb|AE000503.1|AE000503 Escherichia coli K12 38 8.2
gb|AE003568.2|AE003568 Drosophila melanogaster genomic scaf... 38 8.2
emb|AL645783.13| Mouse DNA sequence from clone RP23-459H16 ... 38 8.2
gb|AC005728.1|AC005728 Homo sapiens Chromosome 11p14.3 PAC ... 38 8.2
gb|AC011809.2|AC011809 Arabidopsis thaliana chromosome I cl... 38 8.2
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 38 8.2
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 38 8.2
emb|AL513011.7|AL513011 Human DNA sequence from clone RP11-... 38 8.2
emb|AL357654.9|AL357654 Human DNA sequence from clone RP5-1... 38 8.2
emb|AL391001.12|AL391001 Human DNA sequence from clone RP11... 38 8.2
emb|AL157931.17|AL157931 Human DNA sequence from clone RP11... 38 8.2
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 38 8.2
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 38 8.2
emb|AL034377.1|HS751H9 Human DNA sequence from clone RP4-75... 38 8.2
dbj|AP003366.2| Staphylococcus aureus subsp. aureus Mu50 ge... 38 8.2
dbj|AP003138.2| Staphylococcus aureus subsp. aureus N315 ge... 38 8.2
gb|M91609.1|IS4AAHM Plasmid pTiS4 (from Agrobacterium vitis... 38 8.2
dbj|AP001507.1|AP001507 Bacillus halodurans genomic DNA, se... 38 8.2
dbj|AP000059.1|AP000059 Aeropyrum pernix genomic DNA, secti... 38 8.2
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 38 8.2
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 38 8.2
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 38 8.2
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 38 8.2
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 38 8.2
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 38 8.2
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 44.1 bits (22), Expect = 0.13
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 458 tgtacctcggccgcgaccacgc 479
||||||||||||||||||||||
Sbjct: 508 tgtacctcggccgcgaccacgc 529
>gb|AC092874.2| Sus scrofa clone RP44-326F1, complete sequence
Length = 164404
Score = 42.1 bits (21), Expect = 0.52
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 126 aatactttaacctttgcatgcccaccaat 154
|||||||||||| ||||||||| ||||||
Sbjct: 21413 aatactttaaccattgcatgccaaccaat 21441
>gb|AC096883.2| Sus scrofa clone RP44-276G17, complete sequence
Length = 148088
Score = 42.1 bits (21), Expect = 0.52
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 126 aatactttaacctttgcatgcccaccaat 154
|||||||||||| ||||||||| ||||||
Sbjct: 144710 aatactttaaccattgcatgccaaccaat 144738
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 844 gtacctcggccgcgaccacgc 864
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 527 gtacctcggccgcgaccacgc 547
>emb|AL445201.14|AL445201 Human DNA sequence from clone RP11-358L16 on chromosome 10, complete
sequence [Homo sapiens]
Length = 179193
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 90 atgaaaacatctagataatca 110
|||||||||||||||||||||
Sbjct: 44510 atgaaaacatctagataatca 44530
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 77 gtacctcggccgcgaccacgc 57
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 40 gtacctcggccgcgaccacgc 20
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 52 gtacctcggccgcgaccacgc 32
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 401 gtacctcggccgcgaccacgc 421
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 682 gtacctcggccgcgaccacgc 702
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 427 gtacctcggccgcgaccacgc 447
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 282 gtacctcggccgcgaccacgc 302
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 23 gtacctcggccgcgaccacgc 3
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 405 gtacctcggccgcgaccacgc 425
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 22 gtacctcggccgcgaccacgc 2
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 42.1 bits (21), Expect = 0.52
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 459 gtacctcggccgcgaccacgc 479
|||||||||||||||||||||
Sbjct: 312 gtacctcggccgcgaccacgc 332
>gb|AC092437.4| Homo sapiens BAC clone RP11-326I19 from 4, complete sequence
Length = 203583
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 252 agtaaaaagaaggctgcaga 271
||||||||||||||||||||
Sbjct: 63708 agtaaaaagaaggctgcaga 63727
>ref|NM_125979.1| Arabidopsis thaliana chromosome 5 clone CHR5v12152001
Length = 1914
Score = 40.1 bits (20), Expect = 2.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 344 ttgacgcattttactaacaatctt 367
||||||||||||||||| ||||||
Sbjct: 486 ttgacgcattttactaagaatctt 463
>gb|AY075510.1| Drosophila melanogaster map 89E10-89E10 strain y; cn bw sp
Length = 1233
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 cctcctccatgcagaaggca 32
||||||||||||||||||||
Sbjct: 635 cctcctccatgcagaaggca 616
>gb|AY070646.1| Drosophila melanogaster map 89E10-89E10 strain y; cn bw sp
Length = 1123
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 cctcctccatgcagaaggca 32
||||||||||||||||||||
Sbjct: 665 cctcctccatgcagaaggca 646
>gb|AC093135.2| Pan troglodytes clone RP43-100O17, complete sequence
Length = 172105
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 tgatcttgagtaaactgctt 190
||||||||||||||||||||
Sbjct: 168699 tgatcttgagtaaactgctt 168718
>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone
BACR03M20, complete sequence
Length = 175335
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 cctcctccatgcagaaggca 32
||||||||||||||||||||
Sbjct: 100255 cctcctccatgcagaaggca 100274
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 cctcctccatgcagaaggca 32
||||||||||||||||||||
Sbjct: 96034 cctcctccatgcagaaggca 96053
>gb|AE003715.1|AE003715 Drosophila melanogaster genomic scaffold 142000013386035 section 40 of
105, complete sequence
Length = 223098
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 cctcctccatgcagaaggca 32
||||||||||||||||||||
Sbjct: 195015 cctcctccatgcagaaggca 195034
>gb|AC004945.1|AC004945 Homo sapiens chromosome 7 clone RP5-997N5 map 7q11.23-q21.1, complete
sequence
Length = 167372
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 tgatcttgagtaaactgctt 190
||||||||||||||||||||
Sbjct: 107796 tgatcttgagtaaactgctt 107815
>gb|AC007298.17|AC007298 Homo sapiens 12q22 BAC RPCI11-256L6 (Roswell Park Cancer Institute
Human BAC Library) complete sequence
Length = 201572
Score = 40.1 bits (20), Expect = 2.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 257 aaagaaggctgcagagttcttaca 280
||||||| ||||||||||||||||
Sbjct: 52035 aaagaagactgcagagttcttaca 52058
>gb|AF079255.1|AF079255 Ischaemum santapaui
Length = 1286
Score = 40.1 bits (20), Expect = 2.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 261 aaggctgcagagttcttacatacc 284
||||||||| ||||||||||||||
Sbjct: 898 aaggctgcatagttcttacatacc 921
>emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project)
Length = 118086
Score = 40.1 bits (20), Expect = 2.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 344 ttgacgcattttactaacaatctt 367
||||||||||||||||| ||||||
Sbjct: 26125 ttgacgcattttactaagaatctt 26102
>dbj|AB020743.1|AB020743 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K22J17
Length = 11211
Score = 40.1 bits (20), Expect = 2.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 344 ttgacgcattttactaacaatctt 367
||||||||||||||||| ||||||
Sbjct: 9246 ttgacgcattttactaagaatctt 9269
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 40.1 bits (20), Expect = 2.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 460 tacctcggccgcgaccacgc 479
||||||||||||||||||||
Sbjct: 21 tacctcggccgcgaccacgc 2
>gb|AC011385.6| Homo sapiens chromosome 5 clone CTB-15L17, complete sequence
Length = 134599
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 122 tagaaatactttaaccttt 140
|||||||||||||||||||
Sbjct: 68055 tagaaatactttaaccttt 68037
>gb|AF483544.1| Oncorhynchus mykiss clone B21 VHSV-induced mRNA, partial sequence
Length = 633
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 457 atgtacctcggccgcgaccacgc 479
|||||||||||||| ||||||||
Sbjct: 610 atgtacctcggccgggaccacgc 632
>gb|AC010863.10| Homo sapiens chromosome 10 clone RP11-346E7, complete sequence
Length = 186902
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 203 caaaggaaaaagattcaga 221
|||||||||||||||||||
Sbjct: 123923 caaaggaaaaagattcaga 123941
>gb|AC022387.8| Homo sapiens chromosome 10 clone RP11-111N20, complete sequence
Length = 185819
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 203 caaaggaaaaagattcaga 221
|||||||||||||||||||
Sbjct: 144877 caaaggaaaaagattcaga 144859
>gb|AC113340.2| Homo sapiens chromosome 5 clone CTB-164L20, complete sequence
Length = 84791
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 122 tagaaatactttaaccttt 140
|||||||||||||||||||
Sbjct: 73011 tagaaatactttaaccttt 72993
>gb|AC109473.2| Homo sapiens chromosome 5 clone RP11-3B10, complete sequence
Length = 170363
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 122 tagaaatactttaaccttt 140
|||||||||||||||||||
Sbjct: 32054 tagaaatactttaaccttt 32036
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 200 ctacaaaggaaaaagattcagac 222
||||||||||| |||||||||||
Sbjct: 27207 ctacaaaggaataagattcagac 27229
>gb|AC055860.13| Homo sapiens chromosome 11, clone RP11-195O23, complete sequence
Length = 160494
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 184 actgctttggcaaccacta 202
|||||||||||||||||||
Sbjct: 113825 actgctttggcaaccacta 113807
>gb|AC079436.2| Rattus norvegicus chromosome 4 clone RP31-108L19 strain Brown Norway,
complete sequence
Length = 174622
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 231 ctaacacaactcattatgg 249
|||||||||||||||||||
Sbjct: 51327 ctaacacaactcattatgg 51345
>gb|AC008575.7| Homo sapiens chromosome 5 clone CTC-554D6, complete sequence
Length = 168285
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 200 ctacaaaggaaaaagattcagac 222
||||||||||| |||||||||||
Sbjct: 61005 ctacaaaggaataagattcagac 60983
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 122 tagaaatactttaaccttt 140
|||||||||||||||||||
Sbjct: 56158 tagaaatactttaaccttt 56176
>gb|AC011251.5|AC011251 Drosophila melanogaster, chromosome X, region 19F-20A, BAC clone
BACR09F10, complete sequence
Length = 173508
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 383 ttgatgttgattcatcgatatct 405
||||||| |||||||||||||||
Sbjct: 17215 ttgatgtggattcatcgatatct 17237
>gb|AC079463.3|AC079463 Homo sapiens chromosome 5 clone CTB-123N6, complete sequence
Length = 106514
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 122 tagaaatactttaaccttt 140
|||||||||||||||||||
Sbjct: 47668 tagaaatactttaaccttt 47650
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 200 ctacaaaggaaaaagattcagac 222
||||||||||| |||||||||||
Sbjct: 42821 ctacaaaggaataagattcagac 42843
>gb|U14003.1|ECOUW93 Escherichia coli K-12 chromosomal region from 92.8 to 00.1 minutes
Length = 338534
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68 ccgcccatccttcacggtc 86
|||||||||||||||||||
Sbjct: 251873 ccgcccatccttcacggtc 251855
>gb|AE000503.1|AE000503 Escherichia coli K12
Length = 11277
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68 ccgcccatccttcacggtc 86
|||||||||||||||||||
Sbjct: 9581 ccgcccatccttcacggtc 9563
>gb|AE003568.2|AE003568 Drosophila melanogaster genomic scaffold 142000013386037 section 5 of
5, complete sequence
Length = 292911
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 383 ttgatgttgattcatcgatatct 405
||||||| |||||||||||||||
Sbjct: 94258 ttgatgtggattcatcgatatct 94280
>emb|AL645783.13| Mouse DNA sequence from clone RP23-459H16 on chromosome 13, complete
sequence [Mus musculus]
Length = 98685
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 165 aagaggtgatcttgagtaa 183
|||||||||||||||||||
Sbjct: 89632 aagaggtgatcttgagtaa 89650
>gb|AC005728.1|AC005728 Homo sapiens Chromosome 11p14.3 PAC clone 6-130a9 containing tryptophan
hydroxylase gene, complete sequence
Length = 131389
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 184 actgctttggcaaccacta 202
|||||||||||||||||||
Sbjct: 83432 actgctttggcaaccacta 83450
>gb|AC011809.2|AC011809 Arabidopsis thaliana chromosome I clone F6A14, complete sequence
Length = 108767
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 204 aaaggaaaaagattcagac 222
|||||||||||||||||||
Sbjct: 86005 aaaggaaaaagattcagac 85987
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 135 acctcggccgcgaccacgc 153
>emb|AL513011.7|AL513011 Human DNA sequence from clone RP11-284O5 on chromosome 6, complete
sequence [Homo sapiens]
Length = 157204
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 93 aaaacatctagataatcat 111
|||||||||||||||||||
Sbjct: 143532 aaaacatctagataatcat 143514
>emb|AL357654.9|AL357654 Human DNA sequence from clone RP5-1025P18 on chromosome 20. Contains
STSs and GSSs, complete sequence [Homo sapiens]
Length = 22651
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 244 ttatgggcagtaaaaagaa 262
|||||||||||||||||||
Sbjct: 15809 ttatgggcagtaaaaagaa 15827
>emb|AL391001.12|AL391001 Human DNA sequence from clone RP11-477H21 on chromosome 1, complete
sequence [Homo sapiens]
Length = 196730
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 319 aaacaaatagtttaattgc 337
|||||||||||||||||||
Sbjct: 33707 aaacaaatagtttaattgc 33725
>emb|AL157931.17|AL157931 Human DNA sequence from clone RP11-124N19 on chromosome 13,
complete sequence [Homo sapiens]
Length = 147181
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 244 ttatgggcagtaaaaagaa 262
|||||||||||||||||||
Sbjct: 294 ttatgggcagtaaaaagaa 276
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 39 acctcggccgcgaccacgc 21
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>emb|AL034377.1|HS751H9 Human DNA sequence from clone RP4-751H9 on chromosome 6q13. Contains
the 3' end of a novel gene, ESTs, STSs and GSSs, complete
sequence [Homo sapiens]
Length = 104033
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 318 taaacaaatagtttaattg 336
|||||||||||||||||||
Sbjct: 78206 taaacaaatagtttaattg 78188
>dbj|AP003366.2| Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete
sequence, section 9/9
Length = 109589
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 440 atctttaccaatgacatatgtac 462
||||| |||||||||||||||||
Sbjct: 76854 atcttcaccaatgacatatgtac 76876
>dbj|AP003138.2| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome,
section 10/10
Length = 117016
Score = 38.2 bits (19), Expect = 8.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 440 atctttaccaatgacatatgtac 462
||||| |||||||||||||||||
Sbjct: 84282 atcttcaccaatgacatatgtac 84304
>gb|M91609.1|IS4AAHM Plasmid pTiS4 (from Agrobacterium vitis) T2 tryptophan monooxygenase
(iaaM) and indole acetamide hydrolase (iaaH) genes,
complete cds
Length = 5516
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 agtaaactgctttggcaac 197
|||||||||||||||||||
Sbjct: 4259 agtaaactgctttggcaac 4241
>dbj|AP001507.1|AP001507 Bacillus halodurans genomic DNA, section 1/14
Length = 300150
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 202 acaaaggaaaaagattcag 220
|||||||||||||||||||
Sbjct: 281242 acaaaggaaaaagattcag 281260
>dbj|AP000059.1|AP000059 Aeropyrum pernix genomic DNA, section 2/7
Length = 167000
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 259 agaaggctgcagagttctt 277
|||||||||||||||||||
Sbjct: 122198 agaaggctgcagagttctt 122180
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 20 acctcggccgcgaccacgc 2
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 37 acctcggccgcgaccacgc 55
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 38.2 bits (19), Expect = 8.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 461 acctcggccgcgaccacgc 479
|||||||||||||||||||
Sbjct: 84 acctcggccgcgaccacgc 102
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,381,025
Number of Sequences: 1217082
Number of extensions: 1381025
Number of successful extensions: 25008
Number of sequences better than 10.0: 67
length of query: 480
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 459
effective length of database: 5,475,288,455
effective search space: 2513157400845
effective search space used: 2513157400845
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)