The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.3 [Apr-24-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fgr-S3_1_F21_T7.seq Fgr-S3_1_F21_T7 LENGTH:637bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_F21 ; CLONELIB: n/a 
         (637 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
           922,381 sequences; 289,601,141 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAA84231.1|  (Z34467) antirestriction protein [synthetic...    33   2.1  
ref|NP_395405.1|  (NC_003134) putative antirestriction prote...    31   8.0  

>emb|CAA84231.1| (Z34467) antirestriction protein [synthetic construct]
          Length = 168

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 13/42 (30%), Positives = 23/42 (53%)
 Frame = -3

Query: 377 WVESQGEADYKLRDDFFRIQSDIATIIMKEVIEEKGMFHHGP 252
           W E  GE DY   DD +R +++      +E++E+ G+ +  P
Sbjct: 96  WAEYTGECDYDAFDDAYRGEAESEEDFAREMVEDNGLLNEVP 137



>ref|NP_395405.1| (NC_003134) putative antirestriction protein [Yersinia pestis]
 pir||T14723 antirestriction protein homolog - Yersinia pestis plasmid pMT1
 gb|AAC13241.1| (AF053947) antirestriction protein homolog [Yersinia pestis]
 gb|AAC82748.1| (AF074611) antirestriction protein [Yersinia pestis]
 emb|CAB55243.1| (AL117211) putative antirestriction protein [Yersinia pestis]
          Length = 168

 Score = 31.2 bits (69), Expect = 8.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 377 WVESQGEADYKLRDDFFRIQSDIATIIMKEVIEEKGMFHHGP 252
           W E  GE DY   DD +R +++      +E++++ G+ +  P
Sbjct: 96  WAEYTGECDYDAFDDAYRGEAESEEDYAQEMVDDNGLLNEVP 137



  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  May 11, 2002  4:54 AM
  Number of letters in database: 289,601,141
  Number of sequences in database:  922,381
  
Lambda     K      H
   0.318    0.135     0.00 

Gapped
Lambda     K      H
   0.267   0.0410 4.94e-324 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,451,197
Number of Sequences: 922381
Number of extensions: 6891613
Number of successful extensions: 15065
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15058
length of database: 289,601,141
effective HSP length: 115
effective length of database: 183,527,326
effective search space used: 17618623296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)