The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_G02_T7.seq Fgr-S3_1_G02_T7 LENGTH:434bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_G02 ; CLONELIB: n/a
(434 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87180.1|AF480497_8 (AF480497) putative receptor prote... 32 1.5
gb|AAM13439.1|AF474072_1 (AF474072) similar to putative rec... 30 4.3
ref|NP_442751.1| (NC_000911) soluble lytic transglycosylase... 30 5.7
gb|AAF46710.1| (AE003453) CG10074 gene product [Drosophila ... 30 5.7
ref|NP_173357.1| (NM_101781) respiratory burst oxidase prot... 29 7.4
gb|AAF82233.1|AC069143_9 (AC069143) Contains a strong simil... 29 7.4
gb|AAC39478.1| (AF055356) respiratory burst oxidase protein... 29 7.4
>gb|AAL87180.1|AF480497_8 (AF480497) putative receptor protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 394
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/32 (46%), Positives = 18/32 (55%)
Frame = -2
Query: 187 VREVTSFDYARMKKPCLSSHQKEQLKDGYITP 92
+R +T FDYA +KK HQK QL G P
Sbjct: 62 LRTITYFDYATLKKATRDFHQKNQLGRGGFGP 93
>gb|AAM13439.1|AF474072_1 (AF474072) similar to putative receptor protein kinase from A.
thaliana [Hordeum vulgare subsp. vulgare]
Length = 426
Score = 30.0 bits (66), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (52%)
Frame = -2
Query: 187 VREVTSFDYARMKKPCLSSHQKEQLKDGYITP 92
+R +T FDY +KK HQK QL G P
Sbjct: 62 LRTITYFDYVTLKKATKDFHQKNQLGRGGFGP 93
>ref|NP_442751.1| (NC_000911) soluble lytic transglycosylase [Synechocystis sp. PCC
6803]
pir||S75975 hypothetical protein - Synechocystis sp. (strain PCC 6803)
dbj|BAA10822.1| (D64006) soluble lytic transglycosylase [Synechocystis sp. PCC
6803]
Length = 847
Score = 29.6 bits (65), Expect = 5.7
Identities = 17/53 (32%), Positives = 26/53 (48%)
Frame = -1
Query: 170 FRLCQDEEALSIFSSEGAVEGWLHYSPQDQTNFSSEGLTNLHFFAVMREYLPG 12
+RL QD+EA+ +F++E +P+ N EG T +EYL G
Sbjct: 603 YRLAQDQEAIELFNAEVRARAEGEATPELTVN---EGFTEALLKLTQQEYLQG 652
>gb|AAF46710.1| (AE003453) CG10074 gene product [Drosophila melanogaster]
Length = 1498
Score = 29.6 bits (65), Expect = 5.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 166 RN*SLHVLHILLQRKMILLCKDKRTTKC*H 255
RN +L ++H+LL RK + DKR C H
Sbjct: 367 RNRNLEIVHLLLDRKAKVTASDKRGDTCLH 396
>ref|NP_173357.1| (NM_101781) respiratory burst oxidase protein, putative
[Arabidopsis thaliana]
Length = 926
Score = 29.3 bits (64), Expect = 7.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 261 FARKKGKEIFKTAQMKHFSRTIPLFHDSI*TVAQ 362
FAR KE+F + KH + T+ +F+ I TVA+
Sbjct: 869 FARPNWKEVFSSIARKHPNSTVGVFYCGIQTVAK 902
>gb|AAF82233.1|AC069143_9 (AC069143) Contains a strong similarity to a respiratory burst
oxidase protein E (RbohE) from Arabidopsis thaliana
gb|AF055356 and contains an EF hand PF|00036 and ferric
reductase transmembrane component PF|01794 domains
Length = 932
Score = 29.3 bits (64), Expect = 7.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 261 FARKKGKEIFKTAQMKHFSRTIPLFHDSI*TVAQ 362
FAR KE+F + KH + T+ +F+ I TVA+
Sbjct: 875 FARPNWKEVFSSIARKHPNSTVGVFYCGIQTVAK 908
>gb|AAC39478.1| (AF055356) respiratory burst oxidase protein E [Arabidopsis
thaliana]
Length = 948
Score = 29.3 bits (64), Expect = 7.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 261 FARKKGKEIFKTAQMKHFSRTIPLFHDSI*TVAQ 362
FAR KE+F + KH + T+ +F+ I TVA+
Sbjct: 891 FARPNWKEVFSSIARKHPNSTVGVFYCGIQTVAK 924
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,010,228
Number of Sequences: 922381
Number of extensions: 3738107
Number of successful extensions: 7570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7570
length of database: 289,601,141
effective HSP length: 120
effective length of database: 178,915,421
effective search space used: 4293970104
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)