The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_G03_T7.seq Fgr-S3_1_G03_T7 LENGTH:147bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_G03 ; CLONELIB: n/a
(147 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete s... 56 1e-05
gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B2... 44 0.037
ref|NM_126967.1| Arabidopsis thaliana chromosome 2 clone CH... 44 0.037
gb|AC051631.9|AC051631 Arabidopsis thaliana chromosome I cl... 44 0.037
gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6 42 0.15
dbj|AB010693.1|AB010693 Arabidopsis thaliana genomic DNA, c... 42 0.15
gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds 40 0.58
emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC ch... 40 0.58
emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA... 40 0.58
emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig regio... 40 0.58
emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig regio... 40 0.58
emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig regio... 40 0.58
emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon T... 40 0.58
emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL02... 40 0.58
emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL01... 40 0.58
emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA... 40 0.58
emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL03... 40 0.58
dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in... 40 0.58
dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in... 40 0.58
gb|AF439380.1| Medicago sativa retrotransposon polyprotein ... 38 2.3
gb|AC091238.2| Oryza sativa chromosome 10 clone OSJNBb0022I... 38 2.3
gb|U68072.1|LEU68072 Lycopersicon esculentum copia-like ret... 38 2.3
dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in... 38 2.3
gb|AF483544.1| Oncorhynchus mykiss clone B21 VHSV-induced m... 36 9.0
gb|AC010343.7| Homo sapiens chromosome 5 clone CTD-2017D15,... 36 9.0
gb|AE010506.1| Fusobacterium nucleatum subsp. nucleatum ATC... 36 9.0
gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3,... 36 9.0
gb|AC015502.7| Homo sapiens, clone RP11-21H13, complete seq... 36 9.0
gb|AC022443.5| Homo sapiens chromosome 5 clone RP11-36C20, ... 36 9.0
emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 o... 36 9.0
emb|AL589670.21| Mouse DNA sequence from clone RP23-414K1 o... 36 9.0
emb|AL590993.14|AL590993 Human DNA sequence from clone RP11... 36 9.0
gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33 36 9.0
emb|AL136300.22|AL136300 Human DNA sequence from clone RP11... 36 9.0
gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA seq... 36 9.0
emb|AL160236.4|CNS01RH0 Human chromosome 14 DNA sequence BA... 36 9.0
emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04... 36 9.0
emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 pr... 36 9.0
dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in... 36 9.0
dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in... 36 9.0
dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in... 36 9.0
dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in... 36 9.0
dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in... 36 9.0
dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in... 36 9.0
>gb|AF474982.1| Hordeum vulgare clone BAC 011009, complete sequence
Length = 77136
Score = 56.0 bits (28), Expect = 1e-05
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 47 acccatgtatatcttgagtagtcatcaacaatgacgaatccata 90
|||||||| ||||||||||| |||||||||||||| | ||||||
Sbjct: 26784 acccatgtgtatcttgagtaatcatcaacaatgactagtccata 26741
>gb|AC006528.5| Arabidopsis thaliana chromosome 2 clone F9B22 map mi398, complete
sequence
Length = 95765
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 tcttgagtagtcatcaacaatg 79
||||||||||||||||||||||
Sbjct: 21500 tcttgagtagtcatcaacaatg 21479
>ref|NM_126967.1| Arabidopsis thaliana chromosome 2 clone CHR2v12152001
Length = 4506
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 58 tcttgagtagtcatcaacaatg 79
||||||||||||||||||||||
Sbjct: 1845 tcttgagtagtcatcaacaatg 1824
>gb|AC051631.9|AC051631 Arabidopsis thaliana chromosome I clone T2J15 map mi291, complete
sequence
Length = 96221
Score = 44.1 bits (22), Expect = 0.037
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 tatcttgagtagtcatcaacaa 77
||||||||||||||||||||||
Sbjct: 84407 tatcttgagtagtcatcaacaa 84386
>gb|AF151726.1|AF151726 Dianthus caryophyllus clone CFMI-6
Length = 553
Score = 42.1 bits (21), Expect = 0.15
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtaca 22
|||||||||||||||||||||
Sbjct: 528 cgtggtcgcggccgaggtaca 508
>dbj|AB010693.1|AB010693 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21C13
Length = 75709
Score = 42.1 bits (21), Expect = 0.15
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 49 ccatgtatatcttgagtagtcatcaacaatgac 81
|||||||||||||| | ||| ||||||||||||
Sbjct: 41458 ccatgtatatcttgtgaagtgatcaacaatgac 41490
>gb|AF271776.1|AF271776 Homo sapiens DC48 mRNA, complete cds
Length = 1033
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 863 cgtggtcgcggccgaggtac 844
>emb|AJ315149.1|OMY315149 Oncorhynchus mykiss mRNA for CC chemokine
Length = 548
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 546 cgtggtcgcggccgaggtac 527
>emb|AJ293850.1|KPN293850 Klebsiella pneumoniae partial EVGA gene for putative positive
transcription regulator EVGA, contig region pSL042
Length = 450
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 58 cgtggtcgcggccgaggtac 77
>emb|AJ293849.1|KPN293849 Klebsiella pneumoniae contig region pSL029
Length = 720
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 21 cgtggtcgcggccgaggtac 40
>emb|AJ293848.1|KPN293848 Klebsiella pneumoniae contig region pSL022
Length = 739
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 33 cgtggtcgcggccgaggtac 52
>emb|AJ293847.1|KPN293847 Klebsiella pneumoniae contig region pSL015
Length = 700
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 420 cgtggtcgcggccgaggtac 401
>emb|AJ293846.1|KPN293846 Klebsiella pneumoniae transposon TN3926 partial tra7 gene for
transposase, contig region pSL007
Length = 748
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 701 cgtggtcgcggccgaggtac 682
>emb|AJ276853.1|KPN276853 Klebsiella pneumoniae partial SL021 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 446 cgtggtcgcggccgaggtac 427
>emb|AJ276850.1|KPN276850 Klebsiella pneumoniae partial SL017 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 301 cgtggtcgcggccgaggtac 282
>emb|AJ250102.1|OCU250102 Oryctolagus cuniculus partial mRNA for haptoglobin
Length = 647
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 4 cgtggtcgcggccgaggtac 23
>emb|AJ276856.1|KPN276856 Klebsiella pneumoniae partial SL038 plasmid
Length = 450
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 424 cgtggtcgcggccgaggtac 405
>dbj|AB019571.1|AB019571 Homo sapiens mRNA expressed only in placental villi, clone SMAP5
Length = 1042
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggtac 22
>dbj|AB019563.1|AB019563 Homo sapiens mRNA expressed only in placental villi, clone SMAP42
Length = 333
Score = 40.1 bits (20), Expect = 0.58
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtac 21
||||||||||||||||||||
Sbjct: 331 cgtggtcgcggccgaggtac 312
>gb|AF439380.1| Medicago sativa retrotransposon polyprotein gene interrupted by LTR
retroelement MCIRE, complete sequence
Length = 18789
Score = 38.2 bits (19), Expect = 2.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 68 tcatcaacaatgacgaatccata 90
|||||||||||||| ||||||||
Sbjct: 14580 tcatcaacaatgactaatccata 14558
>gb|AC091238.2| Oryza sativa chromosome 10 clone OSJNBb0022I16, complete sequence
Length = 127068
Score = 38.2 bits (19), Expect = 2.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 68 tcatcaacaatgacgaatccata 90
||||||||||||||||| |||||
Sbjct: 72995 tcatcaacaatgacgaaaccata 73017
>gb|U68072.1|LEU68072 Lycopersicon esculentum copia-like retrotransposon ToRTL1,
3-hydroxy-3-methylglutaryl CoA reductase 2 (HMG2) gene,
complete cds
Length = 16720
Score = 38.2 bits (19), Expect = 2.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 tatcttgagtagtcatcaacaat 78
|||||||| ||||||||||||||
Sbjct: 7657 tatcttgaatagtcatcaacaat 7679
>dbj|AB019573.1|AB019573 Homo sapiens mRNA expressed only in placental villi, clone SMAP31
Length = 300
Score = 38.2 bits (19), Expect = 2.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggta 20
|||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggta 21
>gb|AF483544.1| Oncorhynchus mykiss clone B21 VHSV-induced mRNA, partial sequence
Length = 633
Score = 36.2 bits (18), Expect = 9.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggtacat 23
||||||| ||||||||||||||
Sbjct: 631 cgtggtcccggccgaggtacat 610
>gb|AC010343.7| Homo sapiens chromosome 5 clone CTD-2017D15, complete sequence
Length = 133836
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 50 catgtatatcttgagtag 67
||||||||||||||||||
Sbjct: 51184 catgtatatcttgagtag 51167
>gb|AE010506.1| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 48 of
197 of the complete genome
Length = 10547
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 54 tatatcttgagtagtcat 71
||||||||||||||||||
Sbjct: 8994 tatatcttgagtagtcat 9011
>gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, complete sequence
Length = 204177
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 21 catcattcttgtacagaa 38
||||||||||||||||||
Sbjct: 135236 catcattcttgtacagaa 135253
>gb|AC015502.7| Homo sapiens, clone RP11-21H13, complete sequence
Length = 174520
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 21 catcattcttgtacagaa 38
||||||||||||||||||
Sbjct: 42745 catcattcttgtacagaa 42762
>gb|AC022443.5| Homo sapiens chromosome 5 clone RP11-36C20, complete sequence
Length = 126867
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 50 catgtatatcttgagtag 67
||||||||||||||||||
Sbjct: 102222 catgtatatcttgagtag 102239
>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete
sequence [Mus musculus]
Length = 224628
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30 tgtacagaattatgtgca 47
||||||||||||||||||
Sbjct: 152594 tgtacagaattatgtgca 152611
>emb|AL589670.21| Mouse DNA sequence from clone RP23-414K1 on chromosome 15, complete
sequence [Mus musculus]
Length = 203230
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 101 attgttgtgagggtagag 118
||||||||||||||||||
Sbjct: 131830 attgttgtgagggtagag 131847
>emb|AL590993.14|AL590993 Human DNA sequence from clone RP11-450E24 on chromosome 6, complete
sequence [Homo sapiens]
Length = 139687
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 101 attgttgtgagggtagag 118
||||||||||||||||||
Sbjct: 56340 attgttgtgagggtagag 56323
>gb|AF139768.1|AF139768 Homo sapiens chromosome 7 map 7q33
Length = 985
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggt 20
>emb|AL136300.22|AL136300 Human DNA sequence from clone RP11-10G5 on chromosome 13 Contains a
zinc finger gene similar to ZNF183, the start of the FARP1
(FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1
(chondrocyte-derived)) gene, ESTs, STSs, GSSs and CpG
islands, complet>
Length = 170916
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 64 gtagtcatcaacaatgac 81
||||||||||||||||||
Sbjct: 92367 gtagtcatcaacaatgac 92384
>gb|AF120321.1|AF120321 Mus musculus clone an01-h01 mRNA sequence
Length = 157
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 152 cgtggtcgcggccgaggt 135
>emb|AL160236.4|CNS01RH0 Human chromosome 14 DNA sequence BAC R-193F5 of library RPCI-11 from
chromosome 14 of Homo sapiens (Human), complete sequence
Length = 192401
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 47 acccatgtatatcttgag 64
||||||||||||||||||
Sbjct: 10505 acccatgtatatcttgag 10488
>emb|AJ293853.1|KPN293853 Klebsiella pneumoniae partial YC04 gene for putative capsule
polysaccharide export protein precursor, contig region
pSL001
Length = 500
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 22 cgtggtcgcggccgaggt 39
>emb|AJ292929.1|ABI292929 Agaricus bisporus mRNA for CEL6 protein
Length = 2579
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggt 20
>dbj|AB019574.1|AB019574 Homo sapiens mRNA expressed only in placental villi, clone SMAP27
Length = 106
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggt 20
>dbj|AB019572.1|AB019572 Homo sapiens mRNA expressed only in placental villi, clone SMAP26
Length = 190
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggt 20
>dbj|AB019567.1|AB019567 Homo sapiens mRNA expressed only in placental villi, clone SMAP77
Length = 171
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggt 20
>dbj|AB019565.1|AB019565 Homo sapiens mRNA expressed only in placental villi, clone SMAP52
Length = 1044
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 3 cgtggtcgcggccgaggt 20
>dbj|AB019564.1|AB019564 Homo sapiens mRNA expressed only in placental villi, clone SMAP47
Length = 417
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 54 cgtggtcgcggccgaggt 37
>dbj|AB019562.1|AB019562 Homo sapiens mRNA expressed only in placental villi, clone SMAP41
Length = 103
Score = 36.2 bits (18), Expect = 9.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cgtggtcgcggccgaggt 19
||||||||||||||||||
Sbjct: 101 cgtggtcgcggccgaggt 84
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 279,369
Number of Sequences: 1217082
Number of extensions: 279369
Number of successful extensions: 18376
Number of sequences better than 10.0: 44
length of query: 147
length of database: 5,500,847,177
effective HSP length: 19
effective length of query: 128
effective length of database: 5,477,722,619
effective search space: 701148495232
effective search space used: 701148495232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)