The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_G06_T7.seq Fgr-S3_1_G06_T7 LENGTH:412bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_G06 ; CLONELIB: n/a
(412 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
pir||D75542 hypothetical protein - Deinococcus radiodurans ... 51 2e-09
pir||F75297 hypothetical protein - Deinococcus radiodurans ... 44 2e-07
gb|AAF13032.1|AF113616_1 (AF113616) intestinal mucin 3 [Hom... 32 1.6
gb|AAC02272.1| (AF007194) mucin [Homo sapiens] 32 1.6
dbj|BAB12116.1| (AB038782) intestinal mucin [Homo sapiens] 32 1.6
dbj|BAB12118.1| (AB038784) intestinal mucin [Homo sapiens] 32 1.6
dbj|BAB90320.1| (AP003447) hypothetical protein~similar to ... 31 2.0
ref|NP_055160.1| (NM_014345) endocrine regulator [Homo sapi... 30 4.5
ref|XP_004505.3| (XM_004505) endocrine regulator [Homo sapi... 30 4.5
gb|AAD17298.1| (AF121141) endocrine regulator [Homo sapiens] 30 4.5
ref|XP_061403.1| (XM_061403) hypothetical protein XP_061403... 30 4.5
gb|AAF54065.1| (AE003672) Alhambra gene product [alt 1] [Dr... 30 5.9
ref|NP_596472.1| (NC_003423) hypothetical protein [Schizosa... 30 5.9
gb|AAM08852.1|AC113337_16 (AC113337) Putative retroelement ... 29 7.7
dbj|BAA34474.2| (AB018297) KIAA0754 protein [Homo sapiens] 29 7.7
ref|NP_596690.1| (NC_003423) hypothetical serine-rich secre... 29 7.7
>pir||D75542 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF09840.1|AE001886_6 (AE001886) hypothetical protein [Deinococcus radiodurans]
Length = 139
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 27/54 (50%), Positives = 30/54 (55%)
Frame = +2
Query: 17 GTGILTCFPSTTLFSLALGTD*PCVD*RCAGNLGLSACEFFTRIVVTHVSIRTS 178
G GILTC PS F L LG D P D G L L+A + T +VTH IRTS
Sbjct: 3 GAGILTCCPSAAPFGLTLGPDFPWADDPSPGTLVLTAKKILTSFIVTHAGIRTS 56
Score = 30.4 bits (67), Expect(2) = 2e-09
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 280 APLHLPRRPTRLVSYYAFFKGW 345
+P H R TR VSYYA F+GW
Sbjct: 92 SPDHFRRIVTRPVSYYALFEGW 113
>pir||F75297 hypothetical protein - Deinococcus radiodurans (strain R1)
gb|AAF11800.1|AE002057_8 (AE002057) hypothetical protein [Deinococcus radiodurans]
Length = 133
Score = 43.9 bits (102), Expect(2) = 2e-07
Identities = 23/50 (46%), Positives = 27/50 (54%)
Frame = +2
Query: 29 LTCFPSTTLFSLALGTD*PCVD*RCAGNLGLSACEFFTRIVVTHVSIRTS 178
+TC PS F L LG D P D G L L+A + T +VTH IRTS
Sbjct: 1 MTCCPSAAPFGLTLGPDFPWADDPSPGTLVLTAKKILTSFIVTHAGIRTS 50
Score = 30.4 bits (67), Expect(2) = 2e-07
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 280 APLHLPRRPTRLVSYYAFFKGW 345
+P H R TR VSYYA F+GW
Sbjct: 86 SPDHFRRIVTRPVSYYALFEGW 107
>gb|AAF13032.1|AF113616_1 (AF113616) intestinal mucin 3 [Homo sapiens]
Length = 1217
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (43%)
Frame = +3
Query: 195 FSTHLHRLTERSSTASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*RVAASKPTS*LS 374
FST +H + S++ AS+ G ++SSA ++S + P S +S
Sbjct: 597 FSTTIHSVPSSPYIFSTENVGSASITGFPSLSSSATTSTSSTSSSLTTALTEITPFSYIS 656
Query: 375 KPSHITCPG 401
PS CPG
Sbjct: 657 LPSTTPCPG 665
>gb|AAC02272.1| (AF007194) mucin [Homo sapiens]
Length = 957
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (43%)
Frame = +3
Query: 195 FSTHLHRLTERSSTASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*RVAASKPTS*LS 374
FST +H + S++ AS+ G ++SSA ++S + P S +S
Sbjct: 597 FSTTIHSVPSSPYIFSTENVGSASITGFPSLSSSATTSTSSTSSSLTTALTEITPFSYIS 656
Query: 375 KPSHITCPG 401
PS CPG
Sbjct: 657 LPSTTPCPG 665
>dbj|BAB12116.1| (AB038782) intestinal mucin [Homo sapiens]
Length = 878
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (43%)
Frame = +3
Query: 195 FSTHLHRLTERSSTASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*RVAASKPTS*LS 374
FST +H + S++ AS+ G ++SSA ++S + P S +S
Sbjct: 257 FSTTIHSVPSSPYIFSTENVGSASITGFPSLSSSATTSTSSTSSSLTTALTEITPFSYIS 316
Query: 375 KPSHITCPG 401
PS CPG
Sbjct: 317 LPSTTPCPG 325
>dbj|BAB12118.1| (AB038784) intestinal mucin [Homo sapiens]
Length = 877
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/69 (28%), Positives = 31/69 (43%)
Frame = +3
Query: 195 FSTHLHRLTERSSTASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*RVAASKPTS*LS 374
FST +H + S++ AS+ G ++SSA ++S + P S +S
Sbjct: 257 FSTTIHSVPSSPYIFSTENVGSASITGFPSLSSSATTSTSSTSSSLTTALTEITPFSYIS 316
Query: 375 KPSHITCPG 401
PS CPG
Sbjct: 317 LPSTTPCPG 325
>dbj|BAB90320.1| (AP003447) hypothetical protein~similar to Oryza sativa chromosome
1, P0469E09 [Oryza sativa (japonica cultivar-group)]
Length = 1006
Score = 31.2 bits (69), Expect = 2.0
Identities = 26/84 (30%), Positives = 43/84 (50%)
Frame = -1
Query: 352 EAATL*RKRNSSLVESACAEDVTGLKPCTEATGVIFDDAVEERSVSL*R*VEKLAGGIRS 173
EAA R+ ++ E+ACAE+ + L+ + +DA+ ER +L E A R
Sbjct: 713 EAAVAIREVTLAVHEAACAEEESALR--------LREDALTERERAL---EEAEAAAQRL 761
Query: 172 ANADMSNDNASEKLARRKTKVSCA 101
A++ + A E+ ARR + +CA
Sbjct: 762 ADSLSLREAAQEEQARRNLESACA 785
>ref|NP_055160.1| (NM_014345) endocrine regulator [Homo sapiens]
gb|AAD47387.1|AF090114_1 (AF090114) unknown [Homo sapiens]
Length = 2099
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = +3
Query: 180 IPPASFSTHLHRLTERSS------TASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*R 341
IPPASF + H + +S T+ PV H + P+T QA + LR +
Sbjct: 603 IPPASFDAYRHYMAYAASRWPMYPTSQPSNHPVPEPHRIMPITK--QATRSRPNLRVIPT 660
Query: 342 VAASKP 359
V KP
Sbjct: 661 VTPDKP 666
>ref|XP_004505.3| (XM_004505) endocrine regulator [Homo sapiens]
Length = 2099
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = +3
Query: 180 IPPASFSTHLHRLTERSS------TASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*R 341
IPPASF + H + +S T+ PV H + P+T QA + LR +
Sbjct: 603 IPPASFDAYRHYMAYAASRWPMYPTSQPSNHPVPEPHRIMPITK--QATRSRPNLRVIPT 660
Query: 342 VAASKP 359
V KP
Sbjct: 661 VTPDKP 666
>gb|AAD17298.1| (AF121141) endocrine regulator [Homo sapiens]
Length = 2099
Score = 30.0 bits (66), Expect = 4.5
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Frame = +3
Query: 180 IPPASFSTHLHRLTERSS------TASSKMTPVASVHGLSPVTSSAQADSTSELLRFL*R 341
IPPASF + H + +S T+ PV H + P+T QA + LR +
Sbjct: 603 IPPASFDAYRHYMAYAASRWPMYPTSQPSNHPVPEPHRIMPITK--QATRSRPNLRVIPT 660
Query: 342 VAASKP 359
V KP
Sbjct: 661 VTPDKP 666
>ref|XP_061403.1| (XM_061403) hypothetical protein XP_061403 [Homo sapiens]
Length = 141
Score = 30.0 bits (66), Expect = 4.5
Identities = 17/55 (30%), Positives = 25/55 (44%)
Frame = +2
Query: 110 NLGLSACEFFTRIVVTHVSIRTSDTSSKLLNSPSQAYRTLLYRVIKDDTRSFGAW 274
++GL E FT + +THVS T D KL + + Y ++D G W
Sbjct: 72 DIGLDVSEKFTMVCMTHVSQSTPDIQKKLQKTEN------AYLFVEDIKEPHGFW 120
>gb|AAF54065.1| (AE003672) Alhambra gene product [alt 1] [Drosophila melanogaster]
Length = 1164
Score = 29.6 bits (65), Expect = 5.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 198 STHLHRLTERSSTASSKMTPVASVHGLSPVTSSAQADSTS 317
S+H+H T SS+ S+ T + G +P TSS+ + S
Sbjct: 523 SSHMHACTNSSSSTSTSTTSSSLSGGTAPATSSSNSKGPS 562
>ref|NP_596472.1| (NC_003423) hypothetical protein [Schizosaccharomyces pombe]
pir||T39293 hypothetical protein SPBC1105.16c - fission yeast
(Schizosaccharomyces pombe)
emb|CAB50979.1| (AL096851) putative RNase P subunit; similar to S. cerevisiae RPR2;
possibly involved in tRNA processing
[Schizosaccharomyces pombe]
Length = 107
Score = 29.6 bits (65), Expect = 5.9
Identities = 14/27 (51%), Positives = 16/27 (58%)
Frame = +1
Query: 163 QHSHF*YLQQASQLTFTGLQNAPLPRH 243
QH+ YL QASQL F +Q L RH
Sbjct: 8 QHARVSYLYQASQLLFRNVQEPTLSRH 34
>gb|AAM08852.1|AC113337_16 (AC113337) Putative retroelement [Oryza sativa] [Oryza sativa
(japonica cultivar-group)]
Length = 1318
Score = 29.3 bits (64), Expect = 7.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Frame = -1
Query: 355 LEAATL*RKRNSSLVESACAEDVTG-------LKPCTEATGVIFDDA 236
LE A + RK N +V+S C+ +TG LK ++ ++F DA
Sbjct: 476 LEVALVARKENVWIVDSGCSRHMTGDKNWFSSLKKASKTESIVFADA 522
>dbj|BAA34474.2| (AB018297) KIAA0754 protein [Homo sapiens]
Length = 1174
Score = 29.3 bits (64), Expect = 7.7
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 189 ASFSTHLHRLTERSSTASSKMTPVASVHGLSPVTSSAQADSTSE 320
ASF+ + L E +S A+S TP A V L TS A + TSE
Sbjct: 930 ASFAAVVATLEEPTSPAASVPTPAAMVATLEEFTSPAASVPTSE 973
>ref|NP_596690.1| (NC_003423) hypothetical serine-rich secreted protein
[Schizosaccharomyces pombe]
pir||T39903 serine-rich protein - fission yeast (Schizosaccharomyces pombe)
emb|CAA22127.1| (AL033534) hypothetical serine-rich secreted protein
[Schizosaccharomyces pombe]
Length = 534
Score = 29.3 bits (64), Expect = 7.7
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 2/71 (2%)
Frame = +3
Query: 186 PASFSTHLHRLTERSSTASSKMT--PVASVHGLSPVTSSAQADSTSELLRFL*RVAASKP 359
PAS S+H L+ S++SSK + PV+S + +S + + S+S L L +SKP
Sbjct: 393 PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSL----SSKP 448
Query: 360 TS*LSKPSHIT 392
S S +T
Sbjct: 449 ILTASSSSLLT 459
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,340,095
Number of Sequences: 922381
Number of extensions: 3466897
Number of successful extensions: 7442
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 7216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7429
length of database: 289,601,141
effective HSP length: 112
effective length of database: 186,294,469
effective search space used: 4471067256
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)