The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_G13_T7.seq Fgr-S3_1_G13_T7 LENGTH:498bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_G13 ; CLONELIB: n/a
(498 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
922,381 sequences; 289,601,141 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_050531.1| (NC_000902) similar to DNA methylase [Bact... 148 2e-35
ref|NP_037744.1| (NC_002167) Gp62 [Bacteriophage HK97] >gi|... 148 3e-35
ref|NP_049494.1| (NC_000924) putative DNA N-6-adenine-methy... 148 3e-35
ref|NP_311008.1| (NC_002695) putative DNA methylase [Escher... 148 3e-35
ref|NP_288678.1| (NC_002655) putative DNA methyltransferase... 146 1e-34
ref|NP_536818.1| (NC_003315) dam [Haemophilus phage HP2] >g... 76 1e-13
ref|NP_043482.1| (NC_001697) orf13 [Haemophilus phage HP1] ... 76 1e-13
ref|NP_569584.1| (NC_003385) hypothetical protein [Salmonel... 74 6e-13
gb|AAA87390.1| (J05393) DNA N-6-adenine-methyltransferase (... 58 5e-08
ref|NP_599073.1| (NC_003444) DNA adenine methylase [Shigell... 52 3e-06
sp|P76509|YFDM_ECOLI Hypothetical protein yfdM 50 7e-06
ref|NP_416857.1| (NC_000913) orf, hypothetical protein [Esc... 50 7e-06
ref|NP_613012.1| (NC_003525) hypothetical protein [Stx2 con... 50 1e-05
gb|AAA33195.1| (M11339) ORF3 [Dictyostelium discoideum] 37 0.11
pir||C24785 hypothetical protein 668 - slime mold (Dictyost... 37 0.11
gb|AAA70202.1| (M11340) unknown protein [Dictyostelium disc... 36 0.14
emb|CAD30439.1| (Z81080) cDNA EST yk550a3.5 comes from this... 35 0.42
ref|NP_492344.1| (NM_059943) Human KIAA0086 ORF like [Caeno... 35 0.42
sp|P17369|YHR3_VACCV Hypothetical host range 27.4 kDa prote... 31 6.0
sp|P12932|VHRP_COWPX Host range protein >gi|323392|gb|AAA42... 31 6.0
emb|CAA64094.1| (X94355) D9L [Cowpox virus] >gi|3096985|emb... 31 6.0
ref|NP_619814.1| (NC_003663) V024 [Cowpox virus] >gi|74392|... 31 6.0
gb|AAA72375.1| (L14268) No definition line found [Mycobacte... 30 7.8
>ref|NP_050531.1| (NC_000902) similar to DNA methylase [Bacteriophage VT2-Sa]
ref|NP_309223.1| (NC_002695) putative DNA methylase [Escherichia coli O157:H7]
dbj|BAA84315.1| (AP000363) hypothetical protein [Bacteriophage VT2-Sa]
dbj|BAA94133.1| (AP000422) DNA N-6-adenine-methyltransferase [Escherichia coli
O157:H7]
dbj|BAB34619.1| (AP002554) putative DNA methylase [Escherichia coli O157:H7]
Length = 175
Score = 148 bits (374), Expect = 2e-35
Identities = 65/97 (67%), Positives = 78/97 (80%)
Frame = +3
Query: 192 VTLKSTTDADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWE 371
+T+KS T A DKDCWQTP+WLFDALDIEFGFWLD AAS NALC + TE D+AL +W
Sbjct: 1 MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEADDALNSEWV 60
Query: 372 SHGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
SHG+IW NPPYS I PW+EKAA+Q +Q +T+V+LVP
Sbjct: 61 SHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVP 97
>ref|NP_037744.1| (NC_002167) Gp62 [Bacteriophage HK97]
gb|AAF31137.1| (AF069529) Gp62 [Bacteriophage HK97]
Length = 175
Score = 148 bits (373), Expect = 3e-35
Identities = 65/97 (67%), Positives = 78/97 (80%)
Frame = +3
Query: 192 VTLKSTTDADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWE 371
+T+KS T A DKDCWQTP+WLFDALDIEFGFWLD AAS NALC + TE D+AL +W
Sbjct: 1 MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEADDALNSEWI 60
Query: 372 SHGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
SHG+IW NPPYS I PW+EKAA+Q +Q +T+V+LVP
Sbjct: 61 SHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVP 97
>ref|NP_049494.1| (NC_000924) putative DNA N-6-adenine-methyltransferase
[Bacteriophage 933W]
ref|NP_286970.1| (NC_002655) putative DNA N-6-adenine-methyltransferase of
bacteriophage BP-933W [Escherichia coli O157:H7 EDL933]
ref|NP_613011.1| (NC_003525) hypothetical protein [Stx2 converting bacteriophage I]
emb|CAB39292.1| (Y10775) hypothetical protein [Bacteriophage 933W]
gb|AAD25439.1|AF125520_34 (AF125520) putative DNA N-6-adenine-methyltransferase
[Bacteriophage 933W]
gb|AAG55581.1|AE005296_3 (AE005296) putative DNA N-6-adenine-methyltransferase of
bacteriophage BP-933W [Escherichia coli O157:H7 EDL933]
dbj|BAB87980.1| (AP004402) hypothetical protein [Stx2 converting bacteriophage I]
Length = 175
Score = 148 bits (373), Expect = 3e-35
Identities = 65/97 (67%), Positives = 78/97 (80%)
Frame = +3
Query: 192 VTLKSTTDADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWE 371
+T+KS T A DKDCWQTP+WLFDALDIEFGFWLD AAS NALC + TE D+AL +W
Sbjct: 1 MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEVDDALNSEWV 60
Query: 372 SHGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
SHG+IW NPPYS I PW+EKAA+Q +Q +T+V+LVP
Sbjct: 61 SHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVP 97
>ref|NP_311008.1| (NC_002695) putative DNA methylase [Escherichia coli O157:H7]
dbj|BAB19597.1| (AP000400) DNA N-6-adenine-methyltransferase [Escherichia coli
O157:H7]
dbj|BAB36404.1| (AP002560) putative DNA methylase [Escherichia coli O157:H7]
emb|CAC83142.1| (AJ304858) putative methyltransferase MTase [Escherichia coli]
Length = 175
Score = 148 bits (373), Expect = 3e-35
Identities = 65/97 (67%), Positives = 78/97 (80%)
Frame = +3
Query: 192 VTLKSTTDADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWE 371
+T+KS T A DKDCWQTP+WLFDALDIEFGFWLD AAS NALC + TE D+AL +W
Sbjct: 1 MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEADDALNSEWI 60
Query: 372 SHGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
SHG+IW NPPYS I PW+EKAA+Q +Q +T+V+LVP
Sbjct: 61 SHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVP 97
>ref|NP_288678.1| (NC_002655) putative DNA methyltransferase encoded within prophage
CP-933V [Escherichia coli O157:H7 EDL933]
gb|AAG57233.1|AE005443_1 (AE005443) putative DNA methyltransferase encoded within prophage
CP-933V [Escherichia coli O157:H7 EDL933]
Length = 175
Score = 146 bits (368), Expect = 1e-34
Identities = 64/97 (65%), Positives = 77/97 (78%)
Frame = +3
Query: 192 VTLKSTTDADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWE 371
+T+KS T A DKDCWQTP+WLFDALDIEFGFWLD AAS NA C + TE D+AL +W
Sbjct: 1 MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNAXCAHWLTEADDALNSEWI 60
Query: 372 SHGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
SHG+IW NPPYS I PW+EKAA+Q +Q +T+V+LVP
Sbjct: 61 SHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVP 97
>ref|NP_536818.1| (NC_003315) dam [Haemophilus phage HP2]
gb|AAK37795.1| (AY027935) dam [Haemophilus influenzae phage HP2] [Haemophilus
phage HP2]
Length = 172
Score = 76.3 bits (186), Expect = 1e-13
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +3
Query: 201 KSTTDADDKDCWQTPVWLFDALDIEFG--FWLDVAASKHNALCTQFFTEEDNALERDWES 374
KS T DKD W TP W+F + F F LD A +HN F T E N L DW+
Sbjct: 3 KSNTKKSDKDLWATPWWVFHYAEQYFNIKFDLDTCAMEHNTKVKNFITPEQNTLTADWQG 62
Query: 375 HGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLV 479
W NPPYS LP++ +A QS +KT+V+L+
Sbjct: 63 R-YCWMNPPYSNPLPFVLRAISQSVLHNKTVVMLL 96
>ref|NP_043482.1| (NC_001697) orf13 [Haemophilus phage HP1]
sp|P51715|YO13_BPHP1 PUTATIVE ADENINE-SPECIFIC METHYLASE (ORF13)
pir||S69519 hypothetical protein 13 - phage HP1
gb|AAB09198.1| (U24159) orf13 [Haemophilus phage HP1]
Length = 173
Score = 76.3 bits (186), Expect = 1e-13
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Frame = +3
Query: 201 KSTTDADDKDCWQTPVWLFDALDIEFG--FWLDVAASKHNALCTQFFTEEDNALERDWES 374
KS T DKD W TP W+F + F F LD A +HN F T E N L DW+
Sbjct: 4 KSNTKKSDKDLWATPWWVFHYAEQYFNIKFDLDTCAMEHNTKVKNFITPEQNTLTADWQG 63
Query: 375 HGSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLV 479
W NPPYS LP++ +A QS +KT+V+L+
Sbjct: 64 R-YCWMNPPYSNPLPFVLRAISQSVLHNKTVVMLL 97
>ref|NP_569584.1| (NC_003385) hypothetical protein [Salmonella enterica subsp.
enterica serovar Typhi]
emb|CAD09979.1| (AL513384) hypothetical protein [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 197
Score = 73.9 bits (180), Expect = 6e-13
Identities = 42/98 (42%), Positives = 59/98 (59%), Gaps = 3/98 (3%)
Frame = +3
Query: 201 KSTTDADDKDCWQTPVWLFDALDIEFG--FWLDVAASKHNALCTQFFTEEDNALERDWES 374
K DA +D W+TP WLF A+ G F +DVA +K NAL F E +AL+ W
Sbjct: 9 KRERDASLRDLWRTPQWLFVAIQRYIGVKFDMDVACNKDNALLPNFIGVERDALKCSWGE 68
Query: 375 HGSI-WCNPPYSKILPWIEKAADQSRKQHKTLVLLVPR 485
G++ + NPPYSKI PWI+ AA + + + T V+L+P+
Sbjct: 69 PGTVAFLNPPYSKITPWID-AAIREQARGVTTVMLIPQ 105
>gb|AAA87390.1| (J05393) DNA N-6-adenine-methyltransferase (M.T1) [Enterobacteria
phage T1]
Length = 217
Score = 57.8 bits (138), Expect = 5e-08
Identities = 25/63 (39%), Positives = 40/63 (62%), Gaps = 1/63 (1%)
Frame = +3
Query: 225 KDCWQTPVWLFDALDIEFGFW-LDVAASKHNALCTQFFTEEDNALERDWESHGSIWCNPP 401
+D W TP + L+ +G + LD AAS+ N +C +F+++E N L+R W + +W NPP
Sbjct: 56 RDLWSTPREVIAYLEGRYGKYDLDAAASEENKVCEKFYSQETNCLKRWWGKNKHVWLNPP 115
Query: 402 YSK 410
YS+
Sbjct: 116 YSR 118
>ref|NP_599073.1| (NC_003444) DNA adenine methylase [Shigella flexneri bacteriophage
V]
gb|AAL89443.1| (U82619) DNA adenine methylase [Shigella flexneri bacteriophage V]
Length = 217
Score = 51.6 bits (122), Expect = 3e-06
Identities = 28/67 (41%), Positives = 38/67 (55%), Gaps = 6/67 (8%)
Frame = +3
Query: 228 DCWQTPVWLFDALDIEFG-FWLDVAASKHNALCTQFFTEEDNALERDW-----ESHGSIW 389
D W+TP +F ++ FG F LD+ NA C ++T EDNAL DW E G+ +
Sbjct: 25 DQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAF 84
Query: 390 CNPPYSK 410
NPPYS+
Sbjct: 85 GNPPYSR 91
>sp|P76509|YFDM_ECOLI Hypothetical protein yfdM
Length = 91
Score = 50.4 bits (119), Expect = 7e-06
Identities = 29/71 (40%), Positives = 38/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 228 DCWQTPVWLFDALDIEFG-FWLDVAASKHNALCTQFFTEEDNALERDW-----ESHGSIW 389
D W+TP +F ++ FG F LD+ NA C ++T EDNAL DW E G+ +
Sbjct: 25 DQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAF 84
Query: 390 CNPPYSKILPW 422
NPPY PW
Sbjct: 85 GNPPY----PW 91
>ref|NP_416857.1| (NC_000913) orf, hypothetical protein [Escherichia coli K12]
pir||A65009 hypothetical protein b2356 - Escherichia coli (strain K-12)
gb|AAC75415.1| (AE000324) orf, hypothetical protein [Escherichia coli K12]
Length = 102
Score = 50.4 bits (119), Expect = 7e-06
Identities = 29/71 (40%), Positives = 38/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 228 DCWQTPVWLFDALDIEFG-FWLDVAASKHNALCTQFFTEEDNALERDW-----ESHGSIW 389
D W+TP +F ++ FG F LD+ NA C ++T EDNAL DW E G+ +
Sbjct: 36 DQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAF 95
Query: 390 CNPPYSKILPW 422
NPPY PW
Sbjct: 96 GNPPY----PW 102
>ref|NP_613012.1| (NC_003525) hypothetical protein [Stx2 converting bacteriophage I]
dbj|BAB87981.1| (AP004402) hypothetical protein [Stx2 converting bacteriophage I]
Length = 104
Score = 49.7 bits (117), Expect = 1e-05
Identities = 26/49 (53%), Positives = 27/49 (55%)
Frame = -3
Query: 481 GTKSTSVLCCLRDWSAAFSIHGSILLYGGLHQIEPWLXXXXXXXXXXSV 335
GT T+V C SAAFS HG ILLYGGL QI PWL SV
Sbjct: 54 GTSITTVCRCCMHCSAAFSTHGLILLYGGLFQIAPWLTHSELSASSTSV 102
>gb|AAA33195.1| (M11339) ORF3 [Dictyostelium discoideum]
Length = 608
Score = 36.6 bits (83), Expect = 0.11
Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = +3
Query: 201 KSTTDADDKDCWQTPVWLFDALDIEFG-FWLDVAASKHNALCTQFFTEEDNALERDWESH 377
KS+T WQ +F+ + ++FG +D+ AS N T + T N L DW
Sbjct: 454 KSSTRVIKSYNWQLKKEVFNRIQLQFGQIQMDLFASHLNHQTTNYSTIRMNTLHLDWSQW 513
Query: 378 GSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
PP +LP I + + S + +++L+ P
Sbjct: 514 KQCLAFPP-PILLPSILEKMNSSSSKKVSIILIFP 547
>pir||C24785 hypothetical protein 668 - slime mold (Dictyostelium discoideum)
transposon DIRS-1 (fragment)
Length = 668
Score = 36.6 bits (83), Expect = 0.11
Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = +3
Query: 201 KSTTDADDKDCWQTPVWLFDALDIEFG-FWLDVAASKHNALCTQFFTEEDNALERDWESH 377
KS+T WQ +F+ + ++FG +D+ AS N T + T N L DW
Sbjct: 514 KSSTRVIKSYNWQLKKEVFNRIQLQFGQIQMDLFASHLNHQTTNYSTIRMNTLHLDWSQW 573
Query: 378 GSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
PP +LP I + + S + +++L+ P
Sbjct: 574 KQCLAFPP-PILLPSILEKMNSSSSKKVSIILIFP 607
>gb|AAA70202.1| (M11340) unknown protein [Dictyostelium discoideum]
Length = 608
Score = 36.2 bits (82), Expect = 0.14
Identities = 26/95 (27%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
Frame = +3
Query: 201 KSTTDADDKDCWQTPVWLFDALDIEFG-FWLDVAASKHNALCTQFFTEEDNALERDWESH 377
KS+T WQ +F+ + ++FG +D+ AS N + T NAL DW
Sbjct: 454 KSSTRVIKSYNWQLKKEVFNRIQLQFGQIQMDLFASHLNHQTNNYSTIRMNALHLDWSQW 513
Query: 378 GSIWCNPPYSKILPWIEKAADQSRKQHKTLVLLVP 482
PP +LP I + + S + +++L+ P
Sbjct: 514 KQCLAFPP-PILLPSILEKMNSSSSKKVSIILIFP 547
>emb|CAD30439.1| (Z81080) cDNA EST yk550a3.5 comes from this gene~cDNA EST yk550a3.3
comes from this gene [Caenorhabditis elegans]
Length = 608
Score = 34.7 bits (78), Expect = 0.42
Identities = 22/71 (30%), Positives = 37/71 (51%)
Frame = +3
Query: 213 DADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWESHGSIWC 392
DAD K C Q + DI ++L + S++N L T ++ L++ W S++C
Sbjct: 208 DADLKHCQQIKI----GEDISVDYFLKKSGSRYNFL-THAHSDHYRGLDKKWTR--SVYC 260
Query: 393 NPPYSKILPWI 425
+P +K+LP I
Sbjct: 261 SPETAKLLPHI 271
>ref|NP_492344.1| (NM_059943) Human KIAA0086 ORF like [Caenorhabditis elegans]
pir||T22006 hypothetical protein F39H2.1 - Caenorhabditis elegans
Length = 587
Score = 34.7 bits (78), Expect = 0.42
Identities = 22/71 (30%), Positives = 37/71 (51%)
Frame = +3
Query: 213 DADDKDCWQTPVWLFDALDIEFGFWLDVAASKHNALCTQFFTEEDNALERDWESHGSIWC 392
DAD K C Q + DI ++L + S++N L T ++ L++ W S++C
Sbjct: 252 DADLKHCQQIKI----GEDISVDYFLKKSGSRYNFL-THAHSDHYRGLDKKWTR--SVYC 304
Query: 393 NPPYSKILPWI 425
+P +K+LP I
Sbjct: 305 SPETAKLLPHI 315
>sp|P17369|YHR3_VACCV Hypothetical host range 27.4 kDa protein
pir||WZVZA3 27.4K HindIII-C protein - vaccinia virus (strain WR)
gb|AAA69594.1| (M22812) unknown protein [Vaccinia virus]
Length = 237
Score = 30.8 bits (68), Expect = 6.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 337 VKNCVHSALCLLAATSSQKPNSISKASNNHTGVCQQ 230
+K C+ A+ + TSS+ P SIS+ N++ +C Q
Sbjct: 108 IKQCIKYAMIIDDCTSSKIPESISQRYNDYIDLCNQ 143
>sp|P12932|VHRP_COWPX Host range protein
gb|AAA42918.1| (M19531) host range polypeptide [Cowpox virus]
Length = 669
Score = 30.8 bits (68), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 337 VKNCVHSALCLLAATSSQKPNSISKASNNHTGVCQQ 230
+K C+ A+ + SS+ P SISK N++ +C Q
Sbjct: 539 IKQCIRYAMIIDDCISSKIPESISKHYNDYIDICNQ 574
>emb|CAA64094.1| (X94355) D9L [Cowpox virus]
emb|CAA72559.1| (Y11842) C9L [Cowpox virus]
Length = 668
Score = 30.8 bits (68), Expect = 6.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 337 VKNCVHSALCLLAATSSQKPNSISKASNNHTGVCQQ 230
+K C+ A+ + TSS+ P SIS+ N++ +C Q
Sbjct: 541 IKQCIKYAMIIDDCTSSKIPESISQRYNDYIDLCNQ 576
>ref|NP_619814.1| (NC_003663) V024 [Cowpox virus]
pir||HRVZCP host range protein - cowpox virus
gb|AAM13472.1|AF482758_23 (AF482758) V024 [Cowpox virus]
Length = 668
Score = 30.8 bits (68), Expect = 6.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 337 VKNCVHSALCLLAATSSQKPNSISKASNNHTGVCQQ 230
+K C+ A+ + SS+ P SISK N++ +C Q
Sbjct: 539 IKQCIRYAMIIDDCISSKIPESISKHYNDYIDICNQ 574
>gb|AAA72375.1| (L14268) No definition line found [Mycobacterium tuberculosis]
Length = 168
Score = 30.4 bits (67), Expect = 7.8
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = -2
Query: 242 GLPAVLIVSVSSRFKCHVLFL--KIDLVQNLSN*RYRSVLFAPPSRPCSRNTPALPCFRS 69
GLP +++ +S R +L + + LV +L N RY PPSRP RN P R+
Sbjct: 57 GLPELVVTGLSPRRGQRLLNIAARRALVGDLLNSRYAD---HPPSRPSCRNGPGYTSGRA 113
Query: 68 SE-CV*PLWCEGGPHWYLPGRPL 3
C LW +G GRP+
Sbjct: 114 FVLCDRHLWRQGDGLAVGVGRPV 136
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF
Posted date: May 11, 2002 4:54 AM
Number of letters in database: 289,601,141
Number of sequences in database: 922,381
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,057,941
Number of Sequences: 922381
Number of extensions: 5528231
Number of successful extensions: 13698
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 13364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13689
length of database: 289,601,141
effective HSP length: 111
effective length of database: 187,216,850
effective search space used: 10109709900
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)