The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTN 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_G18_T7.seq Fgr-S3_1_G18_T7 LENGTH:586bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_G18 ; CLONELIB: n/a
(586 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,217,082 sequences; 1,205,879,881 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC091122.8| Oryza sativa (japonica cultivar-group) chrom... 42 0.65
gb|AE000693.1|AE000693 Aquifex aeolicus strain VF5 42 0.65
gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24,... 40 2.6
ref|NM_067643.1| reverse transcriptase 40 2.6
ref|NM_070568.1| Caenorhabditis elegans 40 2.6
gb|AC024204.1| Caenorhabditis elegans cosmid Y73B6A, comple... 40 2.6
gb|AF024493.1| Caenorhabditis elegans cosmid F23F1, complet... 40 2.6
gb|U27312.2| Caenorhabditis elegans cosmid F26A1, complete ... 40 2.6
gb|AF036692.1|AF036692 Caenorhabditis elegans cosmid C44B12... 40 2.6
gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 f... 40 2.6
gb|AC012081.16|AC012081 Homo sapiens 3 BAC RP11-416O18 (Ros... 40 2.6
emb|AL132952.1|CEY51H4A Caenorhabditis elegans cosmid Y51H4... 40 2.6
emb|AL590873.15| Mouse DNA sequence from clone RP23-217I3 o... 40 2.6
emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region i... 40 2.6
emb|AL110479.1|CEY105C5B Caenorhabditis elegans cosmid Y105... 40 2.6
emb|AL117193.2|CEY105C5A Caenorhabditis elegans cosmid Y105... 40 2.6
gb|AC024862.1|AC024862 Caenorhabditis elegans clone Y73B6A,... 40 2.6
>gb|AC091122.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone
OSJNBb0091N21 map G4003, complete sequence
Length = 152423
Score = 42.1 bits (21), Expect = 0.65
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 71 agaagattttcaaaatgaata 91
|||||||||||||||||||||
Sbjct: 69012 agaagattttcaaaatgaata 68992
>gb|AE000693.1|AE000693 Aquifex aeolicus strain VF5
Length = 14693
Score = 42.1 bits (21), Expect = 0.65
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 111 gatgagtcttgaagaatttca 131
|||||||||||||||||||||
Sbjct: 9773 gatgagtcttgaagaatttca 9793
>gb|AC104187.2| Homo sapiens chromosome 3 clone RP11-424N24, complete sequence
Length = 186052
Score = 40.1 bits (20), Expect = 2.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 313 aaagagggcagtaaaagtaacttt 336
|||||||||| |||||||||||||
Sbjct: 123960 aaagagggcaataaaagtaacttt 123937
>ref|NM_067643.1| reverse transcriptase
Length = 1170
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 1142 agattttcaaaatgaatagg 1123
>ref|NM_070568.1| Caenorhabditis elegans
Length = 1041
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 1013 agattttcaaaatgaatagg 994
>gb|AC024204.1| Caenorhabditis elegans cosmid Y73B6A, complete sequence
Length = 93268
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 48902 agattttcaaaatgaatagg 48883
>gb|AF024493.1| Caenorhabditis elegans cosmid F23F1, complete sequence
Length = 20486
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 10698 agattttcaaaatgaatagg 10717
>gb|U27312.2| Caenorhabditis elegans cosmid F26A1, complete sequence
Length = 36852
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 23703 agattttcaaaatgaatagg 23722
>gb|AF036692.1|AF036692 Caenorhabditis elegans cosmid C44B12, complete sequence
Length = 42254
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 37114 agattttcaaaatgaatagg 37133
>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence
Length = 177314
Score = 40.1 bits (20), Expect = 2.6
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 119 ttgaagaatttcactaagcgttcttaat 146
||||| ||||||| ||||||||||||||
Sbjct: 95520 ttgaacaatttcaataagcgttcttaat 95493
>gb|AC012081.16|AC012081 Homo sapiens 3 BAC RP11-416O18 (Roswell Park Cancer Institute Human BAC
Library) complete sequence
Length = 178317
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 324 taaaagtaacttttaattac 343
||||||||||||||||||||
Sbjct: 166103 taaaagtaacttttaattac 166084
>emb|AL132952.1|CEY51H4A Caenorhabditis elegans cosmid Y51H4A, complete sequence
Length = 269619
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 166636 agattttcaaaatgaatagg 166655
>emb|AL590873.15| Mouse DNA sequence from clone RP23-217I3 on chromosome 11, complete
sequence [Mus musculus]
Length = 182011
Score = 40.1 bits (20), Expect = 2.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 ttctcagaagattttcaaaatgaa 89
|||||||||| |||||||||||||
Sbjct: 108126 ttctcagaagtttttcaaaatgaa 108149
>emb|AL713882.1|CNS07YOZ Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
clone 4B7 of library Caltech CITB-BAC from chromosome 11
of Mus musculus (mouse)
Length = 132348
Score = 40.1 bits (20), Expect = 2.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 364 gaactgggaagtgtagatgtgaag 387
||||||||||||||||| ||||||
Sbjct: 61377 gaactgggaagtgtagaagtgaag 61354
>emb|AL110479.1|CEY105C5B Caenorhabditis elegans cosmid Y105C5B, complete sequence
Length = 321304
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 258632 agattttcaaaatgaatagg 258613
>emb|AL117193.2|CEY105C5A Caenorhabditis elegans cosmid Y105C5A, complete sequence
Length = 314838
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 9234 agattttcaaaatgaatagg 9215
>gb|AC024862.1|AC024862 Caenorhabditis elegans clone Y73B6A, complete sequence
Length = 93268
Score = 40.1 bits (20), Expect = 2.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 74 agattttcaaaatgaatagg 93
||||||||||||||||||||
Sbjct: 48902 agattttcaaaatgaatagg 48883
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
Posted date: May 13, 2002 3:54 AM
Number of letters in database: 1,205,879,881
Number of sequences in database: 1,217,082
Lambda K H
1.37 0.711 0.00
Gapped
Lambda K H
1.37 0.711 4.94e-324
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,883,014
Number of Sequences: 1217082
Number of extensions: 1883014
Number of successful extensions: 38718
Number of sequences better than 10.0: 17
length of query: 586
length of database: 5,500,847,177
effective HSP length: 21
effective length of query: 565
effective length of database: 5,475,288,455
effective search space: 3093537977075
effective search space used: 3093537977075
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)