The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
TBLASTX 2.2.3 [Apr-24-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr-S3_1_G18_T7.seq Fgr-S3_1_G18_T7 LENGTH:586bp ;
DIRECTION:5 ; CLONE:Fgr-S3_1_G18 ; CLONELIB: n/a
(586 letters)
Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions
2,802,641 sequences; 1,073,741,643 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF277495.1|BF277495 GA__Eb0030F10f Gossypium arboreum 7-... 48 0.001
gb|BG309944.1|BG309944 HVSMEc0015F10f Hordeum vulgare seedl... 47 0.002
gb|BF698026.1|BF698026 602130329F1 NIH_MGC_56 Homo sapiens ... 37 2.7
gb|BI083956.1|BI083956 602869304F1 NIH_MGC_102 Homo sapiens... 33 6.3
gb|BI724519.1|BI724519 1031072D08.y1 C. reinhardtii CC-1690... 35 7.0
gb|BI717021.1|BI717021 1031014H04.y1 C. reinhardtii CC-1690... 35 7.0
gb|BI724201.1|BI724201 1031069E03.y1 C. reinhardtii CC-1690... 35 7.0
gb|AW639085.1|AW639085 bl78d01.w1 Blackshear/Soares normali... 35 7.0
gb|BI723783.1|BI723783 1031067G07.y1 C. reinhardtii CC-1690... 35 7.0
gb|BI723784.1|BI723784 1031067G07.y2 C. reinhardtii CC-1690... 35 7.0
gb|BI723785.1|BI723785 1031067G07.y3 C. reinhardtii CC-1690... 35 7.0
gb|BI723630.1|BI723630 1031067D06.y2 C. reinhardtii CC-1690... 35 7.0
gb|BI723629.1|BI723629 1031067D06.y1 C. reinhardtii CC-1690... 35 7.0
gb|BM500574.1|BM500574 PAC000000001223 Pioneer AF-1 array Z... 35 9.6
gb|BE868042.1|BE868042 601444145F1 NIH_MGC_65 Homo sapiens ... 35 9.6
gb|AW834393.1|AW834393 MR2-TT0013-231199-018-g02 TT0013 Hom... 35 9.6
dbj|AV624259.1|AV624259 AV624259 Chlamydomonas reinhardtii ... 35 9.6
gb|BF866626.1|BF866626 963070F10.y1 C. reinhardtii CC-1690,... 35 9.6
>gb|BF277495.1|BF277495 GA__Eb0030F10f Gossypium arboreum 7-10 dpa fiber library Gossypium
arboreum cDNA clone GA__Eb0030F10f.
Length = 576
Score = 48.3 bits (99), Expect = 0.001
Identities = 22/40 (55%), Positives = 29/40 (72%)
Frame = +2 / +3
Query: 392 SVQIFHALTRQRKTATAATE*RNPQSARVRRRRGQGSEAL 511
SV + +LTRQ++T TAA + P SA RRRRG+GS+AL
Sbjct: 264 SVHVQCSLTRQQRTTTAAADEDGPASAWFRRRRGRGSQAL 383
Score = 39.1 bits (79), Expect(2) = 0.052
Identities = 19/33 (57%), Positives = 20/33 (60%)
Frame = -2 / -3
Query: 510 RASLP*PRRRRTRADCGFLHSVAAVAVFLCRVR 412
RA LP P RRR A+ G S AAV V CRVR
Sbjct: 382 RA*LPRPLRRRNHAEAGPSSSAAAVVVLCCRVR 284
Score = 21.2 bits (40), Expect(2) = 0.052
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3 / -2
Query: 560 ELSDLAPPLHSIVAGEEEL 504
+L DLAPPL + ++ L
Sbjct: 431 KLQDLAPPLEVSTSAKKSL 375
>gb|BG309944.1|BG309944 HVSMEc0015F10f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
cDNA clone HVSMEc0015F10f.
Length = 818
Score = 47.3 bits (97), Expect = 0.002
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +2 / +3
Query: 386 SSSVQIFHALTRQRKTATAATE*RNPQSARVRRRRGQGSEAL 511
+ SV + +LTRQ++T TAA + P SA RRRRG+GS++L
Sbjct: 189 AGSVHVQCSLTRQQRTTTAAADEDGPASAWFRRRRGRGSQSL 314
Score = 36.8 bits (74), Expect = 2.7
Identities = 17/30 (56%), Positives = 18/30 (59%)
Frame = -2 / -2
Query: 501 LP*PRRRRTRADCGFLHSVAAVAVFLCRVR 412
LP P RRR A+ G S AAV V CRVR
Sbjct: 304 LPRPLRRRNHAEAGPSSSAAAVVVLCCRVR 215
>gb|BF698026.1|BF698026 602130329F1 NIH_MGC_56 Homo sapiens cDNA clone IMAGE:4287079 5'.
Length = 699
Score = 36.8 bits (74), Expect = 2.7
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -1 / +3
Query: 310 FMCFLESLQRCLFLKSSHTKHPTCYMFL 227
+ C L L CLFLK S HP Y+FL
Sbjct: 45 YFCLLTKLDVCLFLKGSEHCHPQIYVFL 128
>gb|BI083956.1|BI083956 602869304F1 NIH_MGC_102 Homo sapiens cDNA clone IMAGE:5013937 5'.
Length = 1330
Score = 33.1 bits (66), Expect(2) = 6.3
Identities = 15/49 (30%), Positives = 25/49 (50%)
Frame = -1 / -1
Query: 379 LHFPVRPVLHQGVIKSYFYCPL*FMCFLESLQRCLFLKSSHTKHPTCYM 233
+HF LH+ ++S F+ PL FL S+ C S + + P C++
Sbjct: 1063 IHFFYLVWLHRSSLRSVFFGPLCSRSFLFSVGHCRCCGSLYPQQPRCFV 917
Score = 19.8 bits (37), Expect(2) = 6.3
Identities = 6/8 (75%), Positives = 7/8 (87%)
Frame = -3 / -3
Query: 194 IPQLCGFS 171
IPQ CGF+
Sbjct: 899 IPQACGFA 876
>gb|BI724519.1|BI724519 1031072D08.y1 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 535
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +2
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 335 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 439
>gb|BI717021.1|BI717021 1031014H04.y1 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 639
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +1
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 373 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 477
>gb|BI724201.1|BI724201 1031069E03.y1 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 542
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +1
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 277 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 381
>gb|AW639085.1|AW639085 bl78d01.w1 Blackshear/Soares normalized Xenopus egg library Xenopus
laevis cDNA clone PBX0078D01 5'.
Length = 583
Score = 35.4 bits (71), Expect = 7.0
Identities = 16/36 (44%), Positives = 21/36 (57%)
Frame = -1 / +3
Query: 382 HLHFPVRPVLHQGVIKSYFYCPL*FMCFLESLQRCL 275
HL+F +R L+Q IKSYF P +SL +CL
Sbjct: 384 HLYFSIRVSLYQIYIKSYFKNPFGVHTVFKSLSQCL 491
>gb|BI723783.1|BI723783 1031067G07.y1 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 526
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +2
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 53 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 157
>gb|BI723784.1|BI723784 1031067G07.y2 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 467
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +2
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 53 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 157
>gb|BI723785.1|BI723785 1031067G07.y3 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 478
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +2
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 53 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 157
>gb|BI723630.1|BI723630 1031067D06.y2 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 499
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +1
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 337 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 441
>gb|BI723629.1|BI723629 1031067D06.y1 C. reinhardtii CC-1690, Stress II (normalized),
Lambda Zap II Chlamydomonas reinhardtii cDNA.
Length = 604
Score = 35.4 bits (71), Expect = 7.0
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +1
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 337 SRRRPTASAATRWPTPMSCAPRRRRPSGWRATPSR 441
>gb|BM500574.1|BM500574 PAC000000001223 Pioneer AF-1 array Zea mays cDNA.
Length = 456
Score = 35.0 bits (70), Expect = 9.6
Identities = 18/44 (40%), Positives = 24/44 (53%)
Frame = +2 / +2
Query: 392 SVQIFHALTRQRKTATAATE*RNPQSARVRRRRGQGSEALPHRQ 523
+V FHA +R+R AA R + R RRR G + A PHR+
Sbjct: 200 AVTRFHARSRRRPAVPAAGARRALRRERARRRGGCAAGARPHRR 331
>gb|BE868042.1|BE868042 601444145F1 NIH_MGC_65 Homo sapiens cDNA clone IMAGE:3848170 5'.
Length = 973
Score = 35.0 bits (70), Expect = 9.6
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = +2 / +2
Query: 425 RKTATAATE*RNPQSARVRRRRGQGSEALPHRQRWN 532
R T E R P + + R+RGQ + A+ HRQR N
Sbjct: 863 RSRGTETPENRVPSAREIERQRGQTTRAVNHRQRRN 970
>gb|AW834393.1|AW834393 MR2-TT0013-231199-018-g02 TT0013 Homo sapiens cDNA.
Length = 237
Score = 35.0 bits (70), Expect = 9.6
Identities = 16/31 (51%), Positives = 18/31 (57%)
Frame = -1 / -1
Query: 388 TSHLHFPVRPVLHQGVIKSYFYCPL*FMCFL 296
+SHL F GVI S F CP+ FMCFL
Sbjct: 147 SSHLMFYCYSFRSGGVIVSGFMCPISFMCFL 55
>dbj|AV624259.1|AV624259 AV624259 Chlamydomonas reinhardtii 5% to 0.04% CO2 Chlamydomonas
reinhardtii cDNA clone LC075c01_r 5'.
Length = 477
Score = 35.0 bits (70), Expect = 9.6
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +2
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 128 SRRRPTASAATRWPTPTSCAPRRRRPSGWRATPSR 232
>gb|BF866626.1|BF866626 963070F10.y1 C. reinhardtii CC-1690, Stress condition I,
normalized, Lambda Zap II Chlamydomonas reinhardtii
cDNA.
Length = 751
Score = 35.0 bits (70), Expect = 9.6
Identities = 17/35 (48%), Positives = 20/35 (56%)
Frame = +2 / +1
Query: 416 TRQRKTATAATE*RNPQSARVRRRRGQGSEALPHR 520
+R+R TA+AAT P S RRRR G A P R
Sbjct: 382 SRRRPTASAATRWPTPTSCAPRRRRPSGWRATPSR 486
Database: Database of GenBank+EMBL+DDBJ sequences from EST Divisions
Posted date: May 12, 2002 6:20 AM
Number of letters in database: 1,220,047,589
Number of sequences in database: 11,552,259
Lambda K H
0.318 0.135 0.00
Matrix: BLOSUM62
Number of Hits to DB: 6,240,184,571
Number of Sequences: 11552259
Number of extensions: 71219314
Number of successful extensions: 3830718
Number of sequences better than 10.0: 22
length of database: 1,838,338,295
effective HSP length: 57
effective length of database: 1,179,859,532
effective search space used: 161640755884
frameshift window, decay const: 50, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)