The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.

BLASTX 2.2.1 [Apr-13-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Fgr_contig0007.seq Fgr_contig0007
         (1275 letters)

Database: nr
           705,144 sequences; 222,175,239 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB90789.1|  (AL355652) hypothetical protein simialr to ...   221  8e-57
ref|NP_012604.1|  Yjr070cp [Saccharomyces cerevisiae] >gi|13...   212  6e-54
gb|AAF57189.1|  (AE003779) CG2245 gene product [Drosophila m...   195  8e-49
pir||T19243  hypothetical protein C14A4.1 - Caenorhabditis e...   184  1e-45
gb|AAH02295.1|AAH02295  (BC002295) Similar to CG2245 gene pr...   184  1e-45
ref|NP_112594.1|  hypothetical protein MGC4293 [Homo sapiens...   178  7e-44
gb|AAK49594.1|AF372878_1  (AF372878) AT3g58180/F9D24_90 [Ara...   145  7e-34
gb|AAC33193.1|  (AC005551) R26529_2, partial CDS [Homo sapiens]   135  5e-31
pir||T45978  hypothetical protein F9D24.90 - Arabidopsis tha...   135  7e-31
gb|AAC27388.1|  (AF027149) similar to ORF YJR070C from S. ce...   120  2e-26
emb|CAB97722.1|  (AL160493) probable hypothetical 35.7 Kd pr...   117  2e-25
gb|AAC27391.1|  (AF028592) unknown [Babesia bovis]                110  2e-23
ref|NP_012597.1|  A12.2 subunit of RNA polymerase I; Rpa12p ...    97  3e-19
sp|O94703|RPA9_SCHPO  DNA-DIRECTED RNA POLYMERASE I 13.1 KDA...    89  6e-17
gb|AAG19974.1|  (AE005079) Vng1743c [Halobacterium sp. NRC-1]      64  3e-09
sp|Q58548|RPOM_METJA  DNA-DIRECTED RNA POLYMERASE SUBUNIT M ...    64  3e-09
ref|NP_075651.1|  nuclear RNA polymerase I small specific su...    60  3e-08
sp|Q56254|RPOM_THECE  DNA-DIRECTED RNA POLYMERASE SUBUNIT M ...    60  4e-08
pir||A71112  probable transcription-associated protein - Pyr...    60  5e-08
ref|NP_127055.1|  DNA-DIRECTED RNA POLYMERASE SUBUNIT M (EC ...    59  6e-08
ref|NP_055411.1|  zinc ribbon domain containing, 1; transcri...    58  2e-07
gb|AAK44118.1|AF370303_1  (AF370303) unknown protein [Arabid...    57  3e-07
pir||T48045  hypothetical protein T12C14.230 - Arabidopsis t...    57  3e-07
pir||S33694  transcription elongation factor tfIIs - Sulfolo...    57  3e-07
sp|Q07271|RPOM_SULAC  DNA-DIRECTED RNA POLYMERASE SUBUNIT M        57  3e-07
gb|AAK18841.1|AC082645_11  (AC082645) putative RNA polymeras...    57  3e-07
pir||A55263  transcription-associated protein - Thermococcus...    56  7e-07
gb|AAF55918.1|  (AE003736) CG13418 gene product [Drosophila ...    55  1e-06
gb|AAK40629.1|  (AE006664) DNA-directed RNA polymerase, subu...    55  1e-06
emb|CAB66386.1|  (AJ271332) archaeal transcription factor S ...    54  2e-06
ref|NP_070063.1|  transcription-associated protein TFIIS [Ar...    53  6e-06
gb|AAB82597.1|  (AF026272) YJR070c-like protein [Babesia big...    52  8e-06
gb|AAF79907.1|AC022472_16  (AC022472) Contains a weak simila...    52  1e-05
gb|AAF57437.1|  (AE003791) CG10438 gene product [Drosophila ...    50  5e-05
ref|XP_007933.2|  polymerase (RNA) III (DNA directed) polype...    49  7e-05
ref|NP_057394.1|  polymerase (RNA) III (DNA directed) polype...    49  7e-05
emb|CAC12135.1|  (AL445066) probable transcription-associate...    49  9e-05
dbj|BAB32384.1|  (AK021353) putative [Mus musculus]                49  9e-05
ref|NP_080177.1|  RIKEN cDNA 1500004O14 gene [Mus musculus] ...    49  1e-04
ref|NP_010330.1|  TFIIS-like small Pol III subunit C11; Rpc1...    49  1e-04
gb|AAF89697.1|AF170279_1  (AF170279) phycoerythrobilin lyase...    48  1e-04
gb|AAD15481.1|  (AC006266) putative DNA-directed RNA polymer...    48  1e-04
pdb|1QYP|     Thermococcus Celer Rpb9, Nmr, 25 Structures          48  1e-04
gb|AAG18974.1|  (AE004998) DNA-directed RNA-polymerase subun...    48  1e-04
ref|NP_111261.1|  DNA-directed RNA polymerase subunit M [The...    48  2e-04
dbj|BAB59895.1|  (AP000993) transcription factor [TFIIS/RPB9...    48  2e-04
pir||E71618  Zn-ribbon transcription factor (TFIIS family) P...    47  3e-04
pir||PS0180  transcription elongation factor S-II-related pr...    47  3e-04
dbj|BAB22010.1|  (AK002319) putative [Mus musculus]                47  3e-04
emb|CAA11392.1|  (AJ223472) transcription elongation factor ...    47  3e-04
gb|AAF71710.1|AF220261_1  (AF220261) transcription elongatio...    46  6e-04
gb|AAA40418.1|  (M18209) transcription factor S-II [Mus musc...    46  6e-04
pir||S26831  transcription elongation factor IIS - human >gi...    46  6e-04
gb|AAF60910.1|  (AC024880) contains similarity to SW:RPB9_DR...    46  6e-04
dbj|BAA00768.1|  (D00925) ORF2 [Mus musculus]                      46  6e-04
sp|P23713|TFSL_MOUSE  TRANSCRIPTION FACTOR S-II-RELATED PROT...    46  6e-04
emb|CAA11393.1|  (AJ223473) transcription elongation factor ...    46  6e-04
ref|NP_035671.1|  transcription elongation factor A (SII), 1...    46  6e-04
pir||JC1170  transcription elongation factor SII - human >gi...    46  6e-04
ref|NP_006747.1|  transcription elongation factor A (SII), 1...    46  6e-04
pir||A53004  transcription elongation factor S-II - rat >gi|...    46  7e-04
ref|NP_033352.1|  transcription elongation factor A (SII), 2...    46  7e-04
pir||S72365  transcription elongation factor TFIIS.oB - Afri...    46  7e-04
gb|AAF97332.1|AC023628_13  (AC023628) Similar to DNA-directe...    46  7e-04
gb|AAF44916.1|AE003406_121  (AE003416) symbol=TfIIS; synonym...    46  7e-04
pir||S55899  transcription elongation factor EF-TfIIS - frui...    46  7e-04
sp|P20232|TFS2_DROME  TRANSCRIPTION ELONGATION FACTOR S-II (...    46  7e-04
pir||S34159  transcription elongation factor IIS - human >gi...    46  7e-04
ref|XP_003202.2|  transcription elongation factor A (SII), 1...    46  7e-04
emb|CAA24928.1|  (X00047) reading frame PPR2 [Saccharomyces ...    45  0.001
emb|CAA66256.1|  (X97666) TFIIS elongation factor [Xenopus l...    45  0.001
gb|AAA34580.1|  (M60770) DST1 [Saccharomyces cerevisiae] >gi...    45  0.001
ref|NP_011472.1|  RNA polymerase II elongation factor; Dst1p...    45  0.001
sp|O13896|RPCZ_SCHPO  DNA-DIRECTED RNA POLYMERASES III 12.5 ...    45  0.001
pir||T19321  hypothetical protein C15H11.8 - Caenorhabditis ...    45  0.002
pir||G72738  probable DNA-directed RNA polymerase subunit M ...    45  0.002
sp|P23881|TFSM_MOUSE  TRANSCRIPTION FACTOR S-II-RELATED PROT...    45  0.002
gb|AAC60115.1|  (U57837) transcription elongation factor [Xe...    45  0.002
ref|NP_003186.1|  transcription elongation factor A (SII), 2...    44  0.002
gb|AAF36076.1|  (AC024214) Hypothetical protein Y77E11A.6 [C...    44  0.002
pir||JC4809  transcriptional factor TFIIS - African clawed f...    44  0.003
gb|AAC64680.1|  (AF039948) transcription elongation factor S...    44  0.004
dbj|BAB16755.1|  (AB040437) transcription elongation factor ...    44  0.004
gb|AAC64679.1|  (AF039947) transcription elongation factor S...    44  0.004
dbj|BAB01057.1|  (AB023041) contains similarity to transcrip...    43  0.005
pdb|1TFI|     Transcriptional Elongation Factor Sii (Tfiis, ...    43  0.005
emb|CAB52702.1|  (AJ001230) bilin biosynthesis protein [Proc...    42  0.008
sp|P52652|TFS2_CAEEL  PUTATIVE TRANSCRIPTION ELONGATION FACT...    42  0.011
emb|CAB62850.1|  (AL035475) putative transcription factor [P...    42  0.011
dbj|BAB25798.1|  (AK008637) putative [Mus musculus]                42  0.014
pir||T43279  DNA-directed RNA polymerase (EC 2.7.7.6) II cha...    41  0.024
sp|O27369|RPOM_METTH  DNA-DIRECTED RNA POLYMERASE SUBUNIT M ...    40  0.031
sp|P49373|TFS2_SCHPO  TRANSCRIPTION ELONGATION FACTOR S-II (...    40  0.053
ref|NP_042831.1|  transcription factor SII homolog [African ...    39  0.069
emb|CAB76962.1|  (AJ133610) alpha-gliadin [Triticum aestivum]      39  0.12
emb|CAA50848.1|  (X71982) transcription factor SII [African ...    39  0.12
dbj|BAB05437.1|  (AP001512) BH1718~unknown conserved protein...    37  0.26
pir||E69096  phycocyanin alpha phycocyanobilin lyase CpcE re...    37  0.26
emb|CAB64589.1|  (AL135958) transcription factor IIS (TFIIS)...    37  0.34
sp|P36958|RPB9_DROME  DNA-DIRECTED RNA POLYMERASE II 15.1 KD...    37  0.45
sp|P04724|GDA4_WHEAT  ALPHA/BETA-GLIADIN A-IV PRECURSOR (PRO...    37  0.45
gb|AAC67362.1|  (AC005499) putative elongation factor [Arabi...    36  0.59
gb|AAA96524.1|  (U51306) alpha-gliadin storage protein [Trit...    36  0.59
ref|NP_003421.1|  zinc finger protein 91 (HPF7, HTF10) [Homo...    36  0.59
ref|XP_008833.3|  zinc finger protein 91 (HPF7, HTF10) [Homo...    36  0.59
pir||S39445  DNA-directed RNA polymerase (EC 2.7.7.6) II cha...    36  0.77
pir||T42076  protein kinase homolog - Streptomyces coelicolo...    36  0.77
ref|NP_048472.1|  contains a zinc ribbon domain; similar to ...    36  0.77
pir||S47663  transcription elongation factor TFIIS homolog -...    36  0.77
emb|CAB76958.1|  (AJ133606) alpha-gliadin [Triticum aestivum]      36  0.77
ref|NP_006224.1|  polymerase (RNA) II (DNA directed) polypep...    36  0.77
emb|CAB76960.1|  (AJ133608) alpha-gliadin [Triticum aestivum]      36  0.77
emb|CAB76959.1|  (AJ133607) alpha-gliadin [Triticum aestivum]      35  1.3
pir||T34241  hypothetical protein F26F12.1 - Caenorhabditis ...    35  1.3
gb|AAF34780.1|  (U96166) srpA [Streptococcus cristatus]            35  1.7
pir||D22364  alpha/beta-gliadin precursor (clone A735) - wheat     35  1.7
emb|CAB76961.1|  (AJ133609) alpha-gliadin [Triticum aestivum]      34  2.2
dbj|BAA01477.1|  (D10627) zinc finger protein [Mus musculus]       34  2.2
dbj|BAA12318.1|  (D84341) alpha-gliadin [Triticum aestivum]        34  2.2
emb|CAA10257.1|  (AJ130948) alpha-gliadin [Triticum aestivum...    34  2.2
emb|CAB76955.1|  (AJ133603) alpha-gliadin [Triticum aestivum]      34  2.2
emb|CAC27153.1|  (AJ310422) RNA polymerase III smallest subu...    34  2.2
pir||T46121  hypothetical protein T2J13.70 - Arabidopsis tha...    34  2.9
pir||S33441  EF protein - Streptococcus suis >gi|298032|emb|...    34  2.9
pir||T51517  telomerase reverse transcriptase - Arabidopsis ...    34  2.9
gb|AAD54276.1|AF172097_1  (AF172097) telomerase reverse tran...    34  2.9
pir||S18235  omega secalin precursor (clone pSec1B) - rye >g...    34  2.9
pir||T26232  hypothetical protein W06D12.5 - Caenorhabditis ...    34  2.9
pir||C69050  phycocyanin alpha phycocyanobilin lyase CpcE - ...    34  2.9
gb|AAB29028.2|  (S66940) RNA polymerase II subunit 9 [Drosop...    34  2.9
pir||S75919  hypothetical protein slr1687 - Synechocystis sp...    33  3.8
sp|P73638|CPCE_SYNY3  PHYCOCYANOBILIN LYASE ALPHA SUBUNIT (P...    33  3.8
pir||S47662  transcription elongation factor TFIIS homolog -...    33  3.8
gb|AAB58912.1|  (U84037) slow myotomal muscle troponin-T iso...    33  3.8
ref|NP_078754.1|  orf105 [lymphocystis disease virus 1]            33  3.8
gb|AAA96276.1|  (U50984) alpha-gliadin [Triticum aestivum]         33  5.0
pir||B41288  vascular cell adhesion molecule 1, short splice...    33  5.0
ref|NP_001069.1|  vascular cell adhesion molecule 1 [Homo sa...    33  5.0
gb|AAD44475.1|AF076964_4  (AF076964) transcription factor II...    33  5.0
gb|AAB07011.1|  (U65898) zinc finger protein XFDL 156 [Xenop...    33  6.5
pir||T23407  hypothetical protein K07C5.6 - Caenorhabditis e...    33  6.5
gb|AAC78143.1|  (AF102552) 270 kDa ankyrin G isoform [Rattus...    33  6.5
emb|CAB65857.1|  (AL121804) /prediction=(method:''genscan'',...    33  6.5
sp|P18715|ZG26_XENLA  GASTRULA ZINC FINGER PROTEIN XLCGF26.1...    33  6.5
gb|AAF45799.1|  (AE003424) EG:BACR7C10.7 gene product [Droso...    33  6.5
pir||A27319  gliadin - wheat >gi|170740|gb|AAA34290.1| (M164...    32  8.5
sp|P04726|GDA6_WHEAT  ALPHA/BETA-GLIADIN CLONE PW1215 PRECUR...    32  8.5
ref|NP_002578.1|  protocadherin 1 (cadherin-like 1); pc42 [H...    32  8.5
pir||B22364  alpha/beta-gliadin precursor (clone A26) - wheat      32  8.5
dbj|BAA34724.1|  (AB020542) Zinc finger protein s11-6 [Mus m...    32  8.5
ref|NP_032398.2|  interleukin 7 receptor; IL-7 receptor alph...    32  8.5
sp|P29729|PECE_MASLA  BILIN BIOSYNTHESIS PROTEIN PECE >gi|14...    32  8.5
gb|AAF60534.1|  (AC006749) Hypothetical protein T22H9.1 [Cae...    32  8.5

>emb|CAB90789.1| (AL355652) hypothetical protein simialr to YJR070C
           [Schizosaccharomyces pombe]
          Length = 318

 Score =  221 bits (564), Expect = 8e-57
 Identities = 125/262 (47%), Positives = 165/262 (62%), Gaps = 4/262 (1%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S LLKHE+AY +GQ+G   AV+PL  +++DL +  M RH          + ++L +L +Y
Sbjct: 60  SELLKHEMAYVMGQSGQQYAVQPLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKY 119

Query: 198 RDRKEEDIS-IVETCEIAIERIEWENSAERQKEKLRPSDFASI-DPAPPMP--ESDKEAE 365
              KE+ ++ I ETCE+AI RI+W+N  ++  EK+ PS + S+ DPAPPMP  E D ++E
Sbjct: 120 Y--KEDPLAPIRETCELAIARIQWKNGLDKNNEKITPSMYDSVVDPAPPMPDHEQDVKSE 177

Query: 366 VEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIA 545
           V  L  +++D N  LF RYR MF LR++ +                G  D S LFRHEIA
Sbjct: 178 VAKLRSEIVDQNLPLFYRYRVMFRLRNIGNEEAVLALTD-------GFKDPSPLFRHEIA 230

Query: 546 FVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVV 725
           FVFGQ+  PAS+PAL + L NT E  MVRHEAAEALG +   D     L+KF  D  +VV
Sbjct: 231 FVFGQMIAPASVPALIKVLENTEEVPMVRHEAAEALGGIA-NDECLPVLKKFSKDDVRVV 289

Query: 726 RESCIVALDIAEYEKGEDAEYALIPE 803
            ESCIVALD+ EYEK  D EYA IP+
Sbjct: 290 AESCIVALDMIEYEKSGDMEYAYIPK 315



 Score = 71.6 bits (174), Expect = 1e-11
 Identities = 45/141 (31%), Positives = 75/141 (52%), Gaps = 2/141 (1%)
 Frame = +3

Query: 357 EAEVEDLGRKL--MDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALF 530
           +A +++L R L  +D +  L  RYRA+F+L  LA                K   D S L 
Sbjct: 8   QAVIDELERVLVNLDKSNPLSFRYRALFSLNALAKKGDKRAVDAIY----KAFIDDSELL 63

Query: 531 RHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHD 710
           +HE+A+V GQ     ++  L   +++ ++  MVRHEAAEALG+LG  + +    + +  D
Sbjct: 64  KHEMAYVMGQSGQQYAVQPLINIVNDLDQQVMVRHEAAEALGALGFTESLPVLEKYYKED 123

Query: 711 KEKVVRESCIVALDIAEYEKGED 779
               +RE+C +A+   +++ G D
Sbjct: 124 PLAPIRETCELAIARIQWKNGLD 146



 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 29/91 (31%), Positives = 52/91 (56%), Gaps = 1/91 (1%)
 Frame = +3

Query: 15  PSALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILRE 194
           PS L +HE+A+  GQ    A+V  L +VL + +E PM RH            + L +L++
Sbjct: 221 PSPLFRHEIAFVFGQMIAPASVPALIKVLENTEEVPMVRHEAAEALGGIANDECLPVLKK 280

Query: 195 YRDRKEEDISIV-ETCEIAIERIEWENSAERQ 287
           +    ++D+ +V E+C +A++ IE+E S + +
Sbjct: 281 F---SKDDVRVVAESCIVALDMIEYEKSGDME 309



>ref|NP_012604.1| Yjr070cp [Saccharomyces cerevisiae]
 sp|P47120|YJ40_YEAST HYPOTHETICAL 36.2 KD PROTEIN IN HAM1-PEM2 INTERGENIC REGION
 pir||S57089 hypothetical protein YJR070c - yeast (Saccharomyces cerevisiae)
 emb|CAA89598.1| (Z49570) ORF YJR070c [Saccharomyces cerevisiae]
 gb|AAB39296.1| (L47993) ORF YJR070c [Saccharomyces cerevisiae]
          Length = 325

 Score =  212 bits (539), Expect = 6e-54
 Identities = 116/258 (44%), Positives = 158/258 (60%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S LLKHE+AY LGQT N  A   LR V+ D  ++PM RH            D+LD L + 
Sbjct: 74  SELLKHEVAYVLGQTKNLDAAPTLRHVMLDQNQEPMVRHEAAEALGALGDKDSLDDLNKA 133

Query: 198 RDRKEEDISIVETCEIAIERIEWENSAERQKEKLRPSDFASIDPAPPMPESDKEAEVEDL 377
             +++  +++ ETCE+AI RI W +   + KE L+ S ++SIDPAPP+P  +K+A + +L
Sbjct: 134 A-KEDPHVAVRETCELAINRINWTHGGAKDKENLQQSLYSSIDPAPPLP-LEKDATIPEL 191

Query: 378 GRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVFG 557
              L D    LF RYRAMF LRD+ +                G S  S+LF+HEIA+VFG
Sbjct: 192 QALLNDPKQPLFQRYRAMFRLRDIGTDEAILALAT-------GFSAESSLFKHEIAYVFG 244

Query: 558 QLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRESC 737
           Q+  PA++P+L E L    EA MVRHEAAEALG++   + V D L+ +L+D+  VVRESC
Sbjct: 245 QIGSPAAVPSLIEVLGRKEEAPMVRHEAAEALGAIASPE-VVDVLKSYLNDEVDVVRESC 303

Query: 738 IVALDIAEYEKGEDAEYA 791
           IVALD+ +YE   + EYA
Sbjct: 304 IVALDMYDYENSNELEYA 321



 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 47/143 (32%), Positives = 77/143 (52%), Gaps = 5/143 (3%)
 Frame = +3

Query: 345 ESDKEAEVEDLGRKLMDTNAD--LFSRYRAMFALRDLASXXXXX---XXXXXXXXXXKGL 509
           E+  E  +E L   L++ +    L +R+RA+F L+ +A                     +
Sbjct: 11  ENVDECTLEQLRDILVNKSGKTVLANRFRALFNLKTVAEEFATKPEEAKKAIEYIAESFV 70

Query: 510 SDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDT 689
           +D S L +HE+A+V GQ  +  + P L   + + N+  MVRHEAAEALG+LG+KD ++D 
Sbjct: 71  NDKSELLKHEVAYVLGQTKNLDAAPTLRHVMLDQNQEPMVRHEAAEALGALGDKDSLDDL 130

Query: 690 LRKFLHDKEKVVRESCIVALDIAEYEKG 773
            +    D    VRE+C +A++   +  G
Sbjct: 131 NKAAKEDPHVAVRETCELAINRINWTHG 158



 Score = 60.1 bits (144), Expect = 4e-08
 Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = +3

Query: 9   ASPSALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDIL 188
           ++ S+L KHE+AY  GQ G+ AAV  L +VL   +E PM RH            + +D+L
Sbjct: 229 SAESSLFKHEIAYVFGQIGSPAAVPSLIEVLGRKEEAPMVRHEAAEALGAIASPEVVDVL 288

Query: 189 REYRDRKEEDISIV-ETCEIAIERIEWENSAE 281
           + Y +   +++ +V E+C +A++  ++ENS E
Sbjct: 289 KSYLN---DEVDVVRESCIVALDMYDYENSNE 317



>gb|AAF57189.1| (AE003779) CG2245 gene product [Drosophila melanogaster]
          Length = 302

 Score =  195 bits (495), Expect = 8e-49
 Identities = 110/258 (42%), Positives = 153/258 (58%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           SALLKHELAYCLGQ  +  A+  L +VL D  ++PM RH            D L IL EY
Sbjct: 51  SALLKHELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPDVLPILEEY 110

Query: 198 RDRKEEDISIVETCEIAIERIEWENSAERQKEKLRPSDFASIDPAPPMPESDKEAEVEDL 377
           +  ++  + + ETC IA++R+ W  S ++  +    + +AS+DP+PP    DK   V +L
Sbjct: 111 K--QDPVVEVAETCAIALDRVRWLQSGQKVDDS---NPYASVDPSPPTA-GDKS--VTEL 162

Query: 378 GRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVFG 557
               +D    LF RYRAMF+LR+L +               +GL DSSALFRHE+AFV G
Sbjct: 163 KAIYLDAQQSLFDRYRAMFSLRNLRTEESVLAIA-------EGLKDSSALFRHEVAFVLG 215

Query: 558 QLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRESC 737
           QL  P SIP L E L +  E  MVRHE AEALG++  +D ++  L ++  D ++VV+ESC
Sbjct: 216 QLQEPCSIPFLQENLEDRLENEMVRHECAEALGAIATEDCIQ-ILNRYAEDDKRVVKESC 274

Query: 738 IVALDIAEYEKGEDAEYA 791
           ++ALD+ EYE   + +YA
Sbjct: 275 VIALDMCEYENSPEFQYA 292



 Score = 79.7 bits (195), Expect = 5e-14
 Identities = 44/132 (33%), Positives = 70/132 (52%)
 Frame = +3

Query: 357 EAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRH 536
           + ++E +G  L +    L  R+RA+F L+++                 K   D SAL +H
Sbjct: 4   QQQIEAIGGVLNNKERPLKERFRALFTLKNIGGGAAIEAIS-------KAFDDDSALLKH 56

Query: 537 EIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKE 716
           E+A+  GQ+    ++  LT+ L +T +  MVRHEAAEA+G++G  D V   L ++  D  
Sbjct: 57  ELAYCLGQMQDAQALDILTKVLKDTTQEPMVRHEAAEAMGAIGHPD-VLPILEEYKQDPV 115

Query: 717 KVVRESCIVALD 752
             V E+C +ALD
Sbjct: 116 VEVAETCAIALD 127



>pir||T19243 hypothetical protein C14A4.1 - Caenorhabditis elegans
 emb|CAA90105.1| (Z49909) cDNA EST yk60c10.5 comes from this gene~cDNA EST yk61g4.5
           comes from this gene~cDNA EST CEMSF21F comes from this
           gene~cDNA EST yk60c10.3 comes from this gene~cDNA EST
           yk61g4.3 comes from this gene~cDNA EST yk158b2.3 comes
           from this gene~cDNA E>
          Length = 298

 Score =  184 bits (467), Expect = 1e-45
 Identities = 109/258 (42%), Positives = 151/258 (58%), Gaps = 1/258 (0%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           SALLKHELAYCLGQ  N  A+  L  VL D K++PM RH               D+LR+Y
Sbjct: 56  SALLKHELAYCLGQMQNKHAIPTLVSVLEDEKQEPMVRHEAGEALGAIADPSVKDVLRKY 115

Query: 198 RDRKEEDISIVETCEIAIERIEWENSAERQKEKLRPSDFASIDPAPPMPESDKEAEVEDL 377
                 ++S  ETC+IA+ R+EW   + +       S + S+DP P    SD    VE+L
Sbjct: 116 AQDPCPEVS--ETCQIALGRVEWVEKSGKDTN----SPYDSVDPTPSASTSD----VEEL 165

Query: 378 GRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGL-SDSSALFRHEIAFVF 554
              L+D +  LF RYRAMF+LR++ +               +GL  + SALFRHE+A+V 
Sbjct: 166 AATLIDASLPLFDRYRAMFSLRNIKTDKSIKALA-------QGLYCEDSALFRHEVAYVL 218

Query: 555 GQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRES 734
           GQL  P +   L + L  + E  MVRHE AEALG++  ++  E  L+++++D+E+VVRES
Sbjct: 219 GQLQSPVATQELKDRLLLSTENCMVRHECAEALGAIANEECTE-ILKQYVNDEERVVRES 277

Query: 735 CIVALDIAEYEKGEDAEYA 791
           C VALD+AEYE  +D +YA
Sbjct: 278 CEVALDMAEYENSDDLQYA 296



 Score = 89.0 bits (219), Expect = 8e-17
 Identities = 52/141 (36%), Positives = 79/141 (55%), Gaps = 2/141 (1%)
 Frame = +3

Query: 357 EAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRH 536
           +AE++  G  L DT   L +R+RA+F LR++                 K L+D SAL +H
Sbjct: 9   DAEIDSFGEALNDTKKPLKARFRALFILRNIGCDRSVDWIG-------KCLNDESALLKH 61

Query: 537 EIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKE 716
           E+A+  GQ+ +  +IP L   L +  +  MVRHEA EALG++ +   V+D LRK+  D  
Sbjct: 62  ELAYCLGQMQNKHAIPTLVSVLEDEKQEPMVRHEAGEALGAIAD-PSVKDVLRKYAQDPC 120

Query: 717 KVVRESCIVALDIAEY--EKGED 779
             V E+C +AL   E+  + G+D
Sbjct: 121 PEVSETCQIALGRVEWVEKSGKD 143



>gb|AAH02295.1|AAH02295 (BC002295) Similar to CG2245 gene product [Mus musculus]
          Length = 302

 Score =  184 bits (467), Expect = 1e-45
 Identities = 107/258 (41%), Positives = 144/258 (55%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           SALLKHELAYCLGQ  +  A+  L  VL D  ++PM RH            + L +L++Y
Sbjct: 51  SALLKHELAYCLGQMRDVRAIPVLVGVLQDTSQEPMVRHEAGEALGAIGNPEVLGLLKQY 110

Query: 198 RDRKEEDISIVETCEIAIERIEWENSAERQKEKLRPSDFASIDPAPPMPESDKEAEVEDL 377
               +  + + ETC++A+ R+EW    +   E      + S+DPAPP  E D    V  L
Sbjct: 111 ST--DPVVEVAETCQLAVGRLEWLQ--QHPGEATCAGPYLSVDPAPPAAEQD----VGRL 162

Query: 378 GRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVFG 557
              L+D    LF RYRAMFALR++                 +GL   SALFRHE+ +V G
Sbjct: 163 REALLDEARPLFERYRAMFALRNVGGKEAALALA-------EGLQCGSALFRHEVGYVLG 215

Query: 558 QLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRESC 737
           QL H A++P L   L+ T E+ MVRHE AEALG++  +      LR+ + D E+VVRESC
Sbjct: 216 QLQHEAAVPGLAATLARTTESPMVRHECAEALGAIA-RPACLAALREHIEDPEQVVRESC 274

Query: 738 IVALDIAEYEKGEDAEYA 791
            VALD+ EYE  +D +YA
Sbjct: 275 EVALDMYEYESSQDFQYA 292



 Score = 84.3 bits (207), Expect = 2e-15
 Identities = 49/136 (36%), Positives = 75/136 (55%)
 Frame = +3

Query: 357 EAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRH 536
           E E+E +G+ L+D    L +R+RA+F LR L                 +G  DSSAL +H
Sbjct: 4   EQEIEAIGKTLVDPKQPLQARFRALFTLRGLGGPDAISWIS-------RGFEDSSALLKH 56

Query: 537 EIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKE 716
           E+A+  GQ+    +IP L   L +T++  MVRHEA EALG++G  + V   L+++  D  
Sbjct: 57  ELAYCLGQMRDVRAIPVLVGVLQDTSQEPMVRHEAGEALGAIGNPE-VLGLLKQYSTDPV 115

Query: 717 KVVRESCIVALDIAEY 764
             V E+C +A+   E+
Sbjct: 116 VEVAETCQLAVGRLEW 131



>ref|NP_112594.1| hypothetical protein MGC4293 [Homo sapiens]
 gb|AAH02817.1|AAH02817 (BC002817) Similar to CG2245 gene product [Homo sapiens]
          Length = 302

 Score =  178 bits (452), Expect = 7e-44
 Identities = 106/258 (41%), Positives = 143/258 (55%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           SALLKHELAYCLGQ  +  A+  L  VL D +++PM RH            + L+IL++Y
Sbjct: 51  SALLKHELAYCLGQMQDARAIPMLVDVLQDTRQEPMVRHEAGEALGAIGDPEVLEILKQY 110

Query: 198 RDRKEEDISIVETCEIAIERIEWENSAERQKEKLRPSDFASIDPAPPMPESDKEAEVEDL 377
               +  I + ETC++A+ R+EW    ++   +     + S+DPAPP  E D    V  L
Sbjct: 111 SS--DPVIEVAETCQLAVRRLEW---LQQHGGEPAAGPYLSVDPAPPAEERD----VGRL 161

Query: 378 GRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVFG 557
              L+D +  LF RYRAMFALR+                  +GL   SALFRHE+ +V G
Sbjct: 162 REALLDESRPLFERYRAMFALRNAGGEEAALALA-------EGLHCGSALFRHEVGYVLG 214

Query: 558 QLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRESC 737
           QL H A++P L  AL+   E  MVRHE AEALG++  +      L+    D E+VVRESC
Sbjct: 215 QLQHEAAVPQLAAALARCTENPMVRHECAEALGAIA-RPACLAALQAHADDPERVVRESC 273

Query: 738 IVALDIAEYEKGEDAEYA 791
            VALD+ E+E G   +YA
Sbjct: 274 EVALDMYEHETGRAFQYA 291



 Score = 83.2 bits (204), Expect = 4e-15
 Identities = 50/148 (33%), Positives = 79/148 (52%)
 Frame = +3

Query: 357 EAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRH 536
           E EV+ +G+ L+D    L +R+RA+F LR L                 +   D SAL +H
Sbjct: 4   EQEVDAIGQTLVDPKQPLQARFRALFTLRGLGGPGAIAWIS-------QAFDDDSALLKH 56

Query: 537 EIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKE 716
           E+A+  GQ+    +IP L + L +T +  MVRHEA EALG++G+ + V + L+++  D  
Sbjct: 57  ELAYCLGQMQDARAIPMLVDVLQDTRQEPMVRHEAGEALGAIGDPE-VLEILKQYSSDPV 115

Query: 717 KVVRESCIVALDIAEYEKGEDAEYALIP 800
             V E+C +A+   E+ +    E A  P
Sbjct: 116 IEVAETCQLAVRRLEWLQQHGGEPAAGP 143



>gb|AAK49594.1|AF372878_1 (AF372878) AT3g58180/F9D24_90 [Arabidopsis thaliana]
          Length = 314

 Score =  145 bits (366), Expect = 7e-34
 Identities = 94/257 (36%), Positives = 136/257 (52%), Gaps = 3/257 (1%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S LL HE A+ LGQ  +  A+  L  VL+D+   P+ RH           A N++IL++ 
Sbjct: 58  SNLLAHEAAFALGQMQDAEAIPALESVLNDMSLHPIVRHEAAEALGAIGLAGNVNILKKS 117

Query: 198 RDRKEEDISIVETCEIAIERIEWENS--AERQKEKLRPSDFASIDPAPPMPESDKEAEVE 371
                    + ETCE+A++RIE  ++  AE Q      S F S+DPA P       + V 
Sbjct: 118 LSSDPAQ-EVRETCELALKRIEDMSNVDAENQSSTTEKSPFMSVDPAGPAASF---SSVH 173

Query: 372 DLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFV 551
            L + L+D    ++ RY A+FALR+                    LS SSAL RHE+A+V
Sbjct: 174 QLRQVLLDETKGMYERYAALFALRNHGGEEAVSAIVDS-------LSASSALLRHEVAYV 226

Query: 552 FGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRE 731
            GQL    ++  L++ L + NE  MVRHEAAEALGS+ ++  +   L +F  D E +V +
Sbjct: 227 LGQLQSKTALATLSKVLRDVNEHPMVRHEAAEALGSIADEQSIA-LLEEFSKDPEPIVAQ 285

Query: 732 SCIVALDIAEYE-KGEDAEY 788
           SC VAL + E+E  G+  E+
Sbjct: 286 SCEVALSMLEFENSGKSFEF 305



 Score = 73.9 bits (180), Expect = 3e-12
 Identities = 48/137 (35%), Positives = 68/137 (49%)
 Frame = +3

Query: 375 LGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVF 554
           L  +L+D +  +  R+RA+F+LR+L                     DSS L  HE AF  
Sbjct: 17  LCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASR-------DSSNLLAHEAAFAL 69

Query: 555 GQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRES 734
           GQ+    +IPAL   L++ +   +VRHEAAEALG++G    V    +    D  + VRE+
Sbjct: 70  GQMQDAEAIPALESVLNDMSLHPIVRHEAAEALGAIGLAGNVNILKKSLSSDPAQEVRET 129

Query: 735 CIVALDIAEYEKGEDAE 785
           C +AL   E     DAE
Sbjct: 130 CELALKRIEDMSNVDAE 146



 Score = 62.4 bits (150), Expect = 8e-09
 Identities = 31/91 (34%), Positives = 53/91 (58%)
 Frame = +3

Query: 9   ASPSALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDIL 188
           ++ SALL+HE+AY LGQ  +  A+  L +VL D+ E PM RH             ++ +L
Sbjct: 213 SASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNEHPMVRHEAAEALGSIADEQSIALL 272

Query: 189 REYRDRKEEDISIVETCEIAIERIEWENSAE 281
            E+   K+ +  + ++CE+A+  +E+ENS +
Sbjct: 273 EEF--SKDPEPIVAQSCEVALSMLEFENSGK 301



>gb|AAC33193.1| (AC005551) R26529_2, partial CDS [Homo sapiens]
          Length = 197

 Score =  135 bits (341), Expect = 5e-31
 Identities = 82/203 (40%), Positives = 112/203 (54%)
 Frame = +3

Query: 183 ILREYRDRKEEDISIVETCEIAIERIEWENSAERQKEKLRPSDFASIDPAPPMPESDKEA 362
           IL++Y    +  I + ETC++A+ R+EW    ++   +     + S+DPAPP  E D   
Sbjct: 1   ILKQYSS--DPVIEVAETCQLAVRRLEW---LQQHGGEPAAGPYLSVDPAPPAEERD--- 52

Query: 363 EVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEI 542
            V  L   L+D +  LF RYRAMFALR+                  +GL   SALFRHE+
Sbjct: 53  -VGRLREALLDESRPLFERYRAMFALRNAGGEEAALALA-------EGLHCGSALFRHEV 104

Query: 543 AFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKV 722
            +V GQL H A++P L  AL+   E  MVRHE AEALG++  +      L+    D E+V
Sbjct: 105 GYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIA-RPACLAALQAHADDPERV 163

Query: 723 VRESCIVALDIAEYEKGEDAEYA 791
           VRESC VALD+ E+E G   +YA
Sbjct: 164 VRESCEVALDMYEHETGRAFQYA 186



 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 29/84 (34%), Positives = 41/84 (48%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           SAL +HE+ Y LGQ  + AAV  L   L+   E+PM RH              L  L+ +
Sbjct: 97  SALFRHEVGYVLGQLQHEAAVPQLAAALARCTENPMVRHECAEALGAIARPACLAALQAH 156

Query: 198 RDRKEEDISIVETCEIAIERIEWE 269
            D  E  +   E+CE+A++  E E
Sbjct: 157 ADDPERVVR--ESCEVALDMYEHE 178



>pir||T45978 hypothetical protein F9D24.90 - Arabidopsis thaliana
 emb|CAB68156.1| (AL137081) putative protein [Arabidopsis thaliana]
          Length = 304

 Score =  135 bits (340), Expect = 7e-31
 Identities = 90/250 (36%), Positives = 130/250 (52%), Gaps = 2/250 (0%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S LL HE A+ LGQ  +  A+  L  VL+D+   P+              A N++IL++ 
Sbjct: 58  SNLLAHEAAFALGQMQDAEAIPALESVLNDMSLHPIAAEALGAIGL----AGNVNILKKS 113

Query: 198 RDRKEEDISIVETCEIAIERIEWENS--AERQKEKLRPSDFASIDPAPPMPESDKEAEVE 371
                    + ETCE+A++RIE  ++  AE Q      S F S+DPA P       + V 
Sbjct: 114 LSSDPAQ-EVRETCELALKRIEDMSNVDAENQSSTTEKSPFMSVDPAGPAASF---SSVH 169

Query: 372 DLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFV 551
            L + L+D    ++ RY A+FALR+                    LS SSAL RHE+A+V
Sbjct: 170 QLRQVLLDETKGMYERYAALFALRNHGGEEAVSAIVDS-------LSASSALLRHEVAYV 222

Query: 552 FGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRE 731
            GQL    ++  L++ L + NE  MVRHEAAEALGS+ ++  +   L +F  D E +V +
Sbjct: 223 LGQLQSKTALATLSKVLRDVNEHPMVRHEAAEALGSIADEQSIA-LLEEFSKDPEPIVAQ 281

Query: 732 SCIVALDIAEYE 767
           SC VAL + E+E
Sbjct: 282 SCEVALSMLEFE 293



 Score = 62.4 bits (150), Expect = 8e-09
 Identities = 31/91 (34%), Positives = 53/91 (58%)
 Frame = +3

Query: 9   ASPSALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDIL 188
           ++ SALL+HE+AY LGQ  +  A+  L +VL D+ E PM RH             ++ +L
Sbjct: 209 SASSALLRHEVAYVLGQLQSKTALATLSKVLRDVNEHPMVRHEAAEALGSIADEQSIALL 268

Query: 189 REYRDRKEEDISIVETCEIAIERIEWENSAE 281
            E+   K+ +  + ++CE+A+  +E+ENS +
Sbjct: 269 EEF--SKDPEPIVAQSCEVALSMLEFENSGK 297



 Score = 60.1 bits (144), Expect = 4e-08
 Identities = 44/137 (32%), Positives = 64/137 (46%)
 Frame = +3

Query: 375 LGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSALFRHEIAFVF 554
           L  +L+D +  +  R+RA+F+LR+L                     DSS L  HE AF  
Sbjct: 17  LCERLVDQSQPISERFRALFSLRNLKGPGPRNALILASR-------DSSNLLAHEAAFAL 69

Query: 555 GQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHDKEKVVRES 734
           GQ+    +IPAL   L++ +    +   AAEALG++G    V    +    D  + VRE+
Sbjct: 70  GQMQDAEAIPALESVLNDMS----LHPIAAEALGAIGLAGNVNILKKSLSSDPAQEVRET 125

Query: 735 CIVALDIAEYEKGEDAE 785
           C +AL   E     DAE
Sbjct: 126 CELALKRIEDMSNVDAE 142



>gb|AAC27388.1| (AF027149) similar to ORF YJR070C from S. cerevisiae [Babesia
           bovis]
          Length = 332

 Score =  120 bits (301), Expect = 2e-26
 Identities = 83/243 (34%), Positives = 127/243 (52%), Gaps = 20/243 (8%)
 Frame = +3

Query: 27  LKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREYRDR 206
           L+HE+AY +GQ     A   L ++L D  EDPM RH              +D L +Y+D 
Sbjct: 70  LRHEIAYVIGQAECEEAADVLVRLLEDTNEDPMVRHEAAKAIAAIGDKTYIDKLEKYKD- 128

Query: 207 KEEDISIVETCEIAIERIEWENSAERQKEK------------LRPSDFASIDPAPPMPES 350
            +E I + +TC +A+E +   N+A++                +  S + +IDP P +   
Sbjct: 129 -DESIVVRDTCRLALESLN--NNAKKGDSSDGVAICGCVSAPISTSAYRAIDPVPCVATE 185

Query: 351 DKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDS-SAL 527
             E  + +L + ++D +A L  RY A+F +R+                    +SD+ S +
Sbjct: 186 IAEMSILELNKVMLDESAPLHKRYEALFQIRNSGGDEAAVMIGNAL------ISDNVSEV 239

Query: 528 FRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSL-------GEKDGVED 686
           FRHE AFV GQ+   A+   L + LSN+ E  + RHEAA ALGS         +++ +  
Sbjct: 240 FRHECAFVLGQMQSMAAADHLLKCLSNSQEKPIARHEAALALGSCAAASNNQSDRNRIIA 299

Query: 687 TLRKFLHDKEKVVRESCIVALDI 755
            L     D  KVV +SCIVALD+
Sbjct: 300 ALEAHKLDSMKVVADSCIVALDV 322



 Score = 66.6 bits (161), Expect = 4e-10
 Identities = 47/143 (32%), Positives = 69/143 (47%), Gaps = 5/143 (3%)
 Frame = +3

Query: 324 DPAPPMPESDKEAEVEDLGRKLMDT-----NADLFSRYRAMFALRDLASXXXXXXXXXXX 488
           D A  + E D   E      KL+ T        L  + +A++  RDL+S           
Sbjct: 3   DLATAIAEFDSLNEFSKPDAKLLSTILLSDGVKLSQQLKALYFCRDLSSSECATILKKAL 62

Query: 489 XXXXKGLSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGE 668
                         RHEIA+V GQ     +   L   L +TNE  MVRHEAA+A+ ++G+
Sbjct: 63  EVHY------DTFLRHEIAYVIGQAECEEAADVLVRLLEDTNEDPMVRHEAAKAIAAIGD 116

Query: 669 KDGVEDTLRKFLHDKEKVVRESCIVALD 752
           K  + D L K+  D+  VVR++C +AL+
Sbjct: 117 KTYI-DKLEKYKDDESIVVRDTCRLALE 143



 Score = 35.4 bits (80), Expect = 1.00
 Identities = 24/81 (29%), Positives = 41/81 (49%), Gaps = 6/81 (7%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLD----- 182
           S + +HE A+ LGQ  + AA   L + LS+ +E P+ RH           A N       
Sbjct: 237 SEVFRHECAFVLGQMQSMAAADHLLKCLSNSQEKPIARHEAALALGSCAAASNNQSDRNR 296

Query: 183 ILREYRDRKEEDISIV-ETCEIAIERI 260
           I+      K + + +V ++C +A++ I
Sbjct: 297 IIAALEAHKLDSMKVVADSCIVALDVI 323



>emb|CAB97722.1| (AL160493) probable hypothetical 35.7 Kd protein [Leishmania major]
          Length = 289

 Score =  117 bits (294), Expect = 2e-25
 Identities = 88/249 (35%), Positives = 121/249 (48%), Gaps = 10/249 (4%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S LL+HELAY  GQ+G   AV  L ++L     D + RH              L +L  +
Sbjct: 32  SVLLQHELAYNAGQSGREEAVPELERILRTTSYDVVTRHEAAEALGAIGSPLALQVLETH 91

Query: 198 RDRKEEDISIV-ETCEIAIERIEW-ENSAERQKEKLRPSDFASIDPAPPMPESDKEAE-- 365
                E  +++ ETCE+A+ RI   E   +         +F S+DP+P         +  
Sbjct: 92  SAPTTEPEALIRETCELALARIAMKETKGDAAVAPPSGCEFVSVDPSPAFSALYSSTDEP 151

Query: 366 ----VEDLGRKLMDTNAD--LFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSAL 527
               VE+L   L+DT+    L         L  L                      SSAL
Sbjct: 152 VPLTVEELEAVLLDTSGRTRLXPPLHGHVYLAQLGDGGGGXPRSVVAFARIP----SSAL 207

Query: 528 FRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLH 707
           FRHE+AFV GQL  P+S PAL  AL +  EA MVRHEAAEALG++ +       L  +  
Sbjct: 208 FRHEVAFVLGQLERPSSQPALIAALKDEEEAPMVRHEAAEALGAIAD-PATLPVLESYAT 266

Query: 708 DKEKVVRESCIVALDIAEY 764
             E +VR+SC+VAL++ +Y
Sbjct: 267 HHEPIVRDSCVVALEMHKY 285



 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 34/91 (37%), Positives = 51/91 (55%), Gaps = 3/91 (3%)
 Frame = +3

Query: 519 SALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVE--DTL 692
           S L +HE+A+  GQ     ++P L   L  T+   + RHEAAEALG++G    ++  +T 
Sbjct: 32  SVLLQHELAYNAGQSGREEAVPELERILRTTSYDVVTRHEAAEALGAIGSPLALQVLETH 91

Query: 693 RKFLHDKEKVVRESCIVAL-DIAEYEKGEDAEYA 791
                + E ++RE+C +AL  IA  E   DA  A
Sbjct: 92  SAPTTEPEALIRETCELALARIAMKETKGDAAVA 125



 Score = 41.6 bits (96), Expect = 0.014
 Identities = 25/83 (30%), Positives = 37/83 (44%)
 Frame = +3

Query: 6   RASPSALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDI 185
           R   SAL +HE+A+ LGQ    ++   L   L D +E PM RH              L +
Sbjct: 201 RIPSSALFRHEVAFVLGQLERPSSQPALIAALKDEEEAPMVRHEAAEALGAIADPATLPV 260

Query: 186 LREYRDRKEEDISIVETCEIAIE 254
           L  Y    E  +   ++C +A+E
Sbjct: 261 LESYATHHEPIVR--DSCVVALE 281



>gb|AAC27391.1| (AF028592) unknown [Babesia bovis]
          Length = 269

 Score =  110 bits (275), Expect = 2e-23
 Identities = 78/238 (32%), Positives = 122/238 (50%), Gaps = 20/238 (8%)
 Frame = +3

Query: 27  LKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREYRDR 206
           L+HE+AY +GQ     A   L ++L D  EDPM RH              +D L +Y+D 
Sbjct: 22  LRHEIAYVIGQAECEEAADVLVRLLEDTNEDPMVRHEAAEAIAAIGDKTYIDKLEKYKD- 80

Query: 207 KEEDISIVETCEIAIERIEWENSAERQKEK------------LRPSDFASIDPAPPMPES 350
            +E I + +TC +A+E +   N+A++                +  S + +IDP P +   
Sbjct: 81  -DESIVVRDTCRLALESLN--NNAKKGDSSDGVAICGCVSAPISTSAYRAIDPVPCVATE 137

Query: 351 DKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDS-SAL 527
             E  + +L + ++D +A L  RY A+F +R+                    +SD+ S +
Sbjct: 138 IAEMSILELNKVMLDESAPLHKRYEALFQIRNSGGDEAAVMIGNAL------ISDNVSEV 191

Query: 528 FRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSL-------GEKDGVED 686
           FRHE AFV GQ+   A+   L + LSN+ E  + RHEAA ALGS         +++ +  
Sbjct: 192 FRHECAFVLGQMQSMAAADHLLKCLSNSQEKPIARHEAALALGSCAAASNNQSDRNRIIA 251

Query: 687 TLRKFLHDKEKVVRESCI 740
            L     +  KVV +SCI
Sbjct: 252 ALEAHKLNSMKVVADSCI 269



 Score = 65.5 bits (158), Expect = 9e-10
 Identities = 34/74 (45%), Positives = 48/74 (63%)
 Frame = +3

Query: 531 RHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKFLHD 710
           RHEIA+V GQ     +   L   L +TNE  MVRHEAAEA+ ++G+K  + D L K+  D
Sbjct: 23  RHEIAYVIGQAECEEAADVLVRLLEDTNEDPMVRHEAAEAIAAIGDKTYI-DKLEKYKDD 81

Query: 711 KEKVVRESCIVALD 752
           +  VVR++C +AL+
Sbjct: 82  ESIVVRDTCRLALE 95



 Score = 34.3 bits (77), Expect = 2.2
 Identities = 18/53 (33%), Positives = 26/53 (48%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADN 176
           S + +HE A+ LGQ  + AA   L + LS+ +E P+ RH           A N
Sbjct: 189 SEVFRHECAFVLGQMQSMAAADHLLKCLSNSQEKPIARHEAALALGSCAAASN 241



>ref|NP_012597.1| A12.2 subunit of RNA polymerase I; Rpa12p [Saccharomyces cerevisiae]
 sp|P32529|RPA9_YEAST DNA-DIRECTED RNA POLYMERASE I 13.7 KD POLYPEPTIDE (A12.2)
 pir||A48107 DNA-directed RNA polymerase (EC 2.7.7.6) I chain A12.2 - yeast
            (Saccharomyces cerevisiae)
 gb|AAA34992.1| (L00708) RNA polymerase I subunit A12.2 [Saccharomyces cerevisiae]
 gb|AAB59319.1| (L35564) RNA polymerase I A12.2 subunit [Saccharomyces cerevisiae]
 emb|CAA89591.1| (Z49563) ORF YJR063w [Saccharomyces cerevisiae]
 gb|AAB39289.1| (L47993) ORF YJR063w [Saccharomyces cerevisiae]
          Length = 125

 Score = 97.1 bits (240), Expect = 3e-19
 Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 4/122 (3%)
 Frame = -1

Query: 1227 MAAIGTLVFCTDCGNLLPATKGTQRNVLRCECCGA---ENRDTGSKVTVTQTKPSDFPSF 1057
            M+ +G+L+FC DCG+LL        + + C  C A   +++ +  KV VT T    FPS 
Sbjct: 1    MSVVGSLIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKV-VTTTADDAFPSS 59

Query: 1056 LRQKLQSSVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGN 880
            LR K      S++K+ L+  +T  E CP+CG EE+ Y T+QLRSADEG+TV Y+C  CG 
Sbjct: 60   LRAKKSVVKTSLKKNELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGY 119

Query: 879  SWNENN 862
             +  NN
Sbjct: 120  KFRTNN 125



>sp|O94703|RPA9_SCHPO DNA-DIRECTED RNA POLYMERASE I 13.1 KDA POLYPEPTIDE
 pir||T40892 dna-directed rna polymerase i subunit - fission yeast
            (Schizosaccharomyces pombe)
 emb|CAA22541.1| (AL034564) dna-directed rna polymerase i subunit [Schizosaccharomyces
            pombe]
 dbj|BAA87928.1| (AB023403) RPA12 [Schizosaccharomyces pombe]
 dbj|BAA87930.1| (AB023817) SpRPA12 [Schizosaccharomyces pombe]
 gb|AAF80580.1|AF219943_1 (AF219943) RNA polymerase I specific subunit Rpa12
            [Schizosaccharomyces pombe]
          Length = 119

 Score = 89.4 bits (220), Expect = 6e-17
 Identities = 50/122 (40%), Positives = 72/122 (58%), Gaps = 1/122 (0%)
 Frame = -1

Query: 1227 MAAIGTLVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQ 1048
            M+AIG+L+FC++CGNLL +T        +C+     +    + V  T++  S FPS L  
Sbjct: 1    MSAIGSLIFCSECGNLLESTTAQWTTCDQCQSV-YPSEQFANLVVETKSSASAFPSAL-- 57

Query: 1047 KLQSSVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWN 871
            KL+ S+  VE    +  +T  E CPKCG + + + T+QLRSADEGSTV Y C  C   ++
Sbjct: 58   KLKHSIVQVESQK-EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116

Query: 870  ENN 862
             NN
Sbjct: 117  TNN 119



>gb|AAG19974.1| (AE005079) Vng1743c [Halobacterium sp. NRC-1]
          Length = 219

 Score = 63.5 bits (153), Expect = 3e-09
 Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC +CG+++    G     + C  CGA     GS+          F     Q     +++
Sbjct: 118  FCDECGSMMHKQDGE----MVCASCGASADSEGSE---------GFVETASQDTSDVIET 164

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNENN 862
             E    + + TA ETCP+CG  E  YT  Q  SADE  T  + C +CGN W + N
Sbjct: 165  SEDAASEGKPTAEETCPECGHGEAWYTIKQTGSADEPPTRFFKCQDCGNRWRDYN 219



>sp|Q58548|RPOM_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT M
 pir||C64443 transcription-associated protein 'TFIIS' homolog - Methanococcus
            jannaschii
 gb|AAB99148.1| (U67557) transcription-associated protein ('TFIIS') [Methanococcus
            jannaschii]
          Length = 108

 Score = 63.5 bits (153), Expect = 3e-09
 Identities = 37/112 (33%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  C NL+    G     L+C  CG E      + T   +K  ++   L  K +  +  
Sbjct: 4    FCPKCNNLMLPKDGK----LKCAVCGYEE-----ETTAEGSKEYEYKEHLENK-KEKITV 53

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            +E   L+T  T    CPKCG  E  +   Q R ADE  T  Y C +CG++W E
Sbjct: 54   IESEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106



>ref|NP_075651.1| nuclear RNA polymerase I small specific subunit [Mus musculus]
 gb|AAG50161.1|AF230339_1 (AF230339) nuclear RNA polymerase I small specific subunit Rpa12 [Mus
            musculus]
 gb|AAG50162.1|AF230340_1 (AF230340) nuclear RNA polymerase I small specific subunit Rpa12 [Mus
            musculus]
 dbj|BAB22954.1| (AK003714) putative [Mus musculus]
 dbj|BAB24350.1| (AK005976) putative [Mus musculus]
 dbj|BAB31572.1| (AK019152) putative [Mus musculus]
          Length = 123

 Score = 60.5 bits (145), Expect = 3e-08
 Identities = 42/106 (39%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCG--AENRDTGSKVTVTQTKPSDFPSFLRQKLQS 1036
            L FC DCG++LP   G Q  V+ C  CG   + RD   KV  T        S +  KL +
Sbjct: 14   LDFCPDCGSVLPLP-GIQDTVI-CSRCGFSIDVRDCEGKVVKT--------SVVFNKLGA 63

Query: 1035 SVQ-SVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC 892
            ++  SV++            CP+CG E + Y T Q+RSADEG TV Y+C
Sbjct: 64   TIPLSVDEGPELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTC 112



>sp|Q56254|RPOM_THECE DNA-DIRECTED RNA POLYMERASE SUBUNIT M
 gb|AAA72052.1| (L27650) RNA polymerase [Thermococcus celer]
          Length = 110

 Score = 60.1 bits (144), Expect = 4e-08
 Identities = 36/110 (32%), Positives = 59/110 (52%), Gaps = 4/110 (3%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAE---NRDTGSKVTVTQTKPSDFPSFLRQKLQSS 1033
            FC  CGNL+   +  +R V  C  CG E   + +   + TV + +       ++ K    
Sbjct: 3    FCPKCGNLMLPDR--KRKVWVCRSCGYEEPFDEEKDREKTVIKQE-------VKHKPDEG 53

Query: 1032 VQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            +  +E+ +L+T  T   TCPKCG +   +  +Q R+ DE ST+ Y C +CG++W
Sbjct: 54   IVVIEQ-DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 106



>pir||A71112 probable transcription-associated protein - Pyrococcus horikoshii
 dbj|BAA29755.1| (AP000003) 110aa long hypothetical transcription-associated protein
            [Pyrococcus horikoshii]
          Length = 110

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 38/110 (34%), Positives = 51/110 (45%), Gaps = 1/110 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CG+++   K  +R V  C  CG E       +     K       ++ K    V  
Sbjct: 4    FCPRCGSIMIPDK--KRGVFVCRKCGYEE-----PINPEDAKAYRRTEEIKHKPDEGVIV 56

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSCE-CGNSW 874
            +E+ +  T  TA  TCPKCG  E  Y  VQ R+ DE ST+ Y C+ CG  W
Sbjct: 57   IEQ-DFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKCKRCGYVW 106



>ref|NP_127055.1| DNA-DIRECTED RNA POLYMERASE SUBUNIT M (EC 2.7.7.6). [Pyrococcus
            abyssi]
 pir||H75048 DNA-directed RNA polymerase (EC 2.7.7.6) chain M PAB1464 - Pyrococcus
            abyssi (strain Orsay)
 emb|CAB50285.1| (AJ248287) DNA-DIRECTED RNA POLYMERASE SUBUNIT M (EC 2.7.7.6).
            [Pyrococcus abyssi]
          Length = 110

 Score = 59.3 bits (142), Expect = 6e-08
 Identities = 38/110 (34%), Positives = 51/110 (45%), Gaps = 1/110 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CG+++   K  +R V  C  CG E       +     K       ++ K    V  
Sbjct: 4    FCPKCGSIMIPDK--KRGVFVCRRCGYEE-----PINPEDAKAYKRTEEVKHKPDEGVIV 56

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSCE-CGNSW 874
            VE+ +  T  TA  TCPKCG  E  Y  +Q R+ DE ST+ Y C+ CG  W
Sbjct: 57   VEQ-DFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKCKRCGYVW 106



>ref|NP_055411.1| zinc ribbon domain containing, 1; transcription-associated zinc
            ribbon protein [Homo sapiens]
 ref|XP_004546.1| zinc ribbon domain containing, 1 [Homo sapiens]
 gb|AAF40469.1|AF024617_1 (AF024617) transcription-associated zinc ribbon protein [Homo
            sapiens]
 gb|AAG50159.1|AF230337_1 (AF230337) nuclear RNA polymerase I small specific subunit Rpa12
            [Homo sapiens]
 gb|AAG50160.1|AF230338_1 (AF230338) nuclear RNA polymerase I small specific subunit Rpa12
            [Homo sapiens]
          Length = 126

 Score = 57.8 bits (138), Expect = 2e-07
 Identities = 41/106 (38%), Positives = 50/106 (46%), Gaps = 2/106 (1%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCG--AENRDTGSKVTVTQTKPSDFPSFLRQKLQS 1036
            L FC+DCG++LP   G Q  V  C  CG     RD   KV  T            Q   +
Sbjct: 17   LDFCSDCGSVLPLP-GAQDTVT-CIRCGFNINVRDFEGKVVKTSV-------VFHQLGTA 67

Query: 1035 SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC 892
               SVE+            CP+CG E + Y T Q+RSADEG TV Y+C
Sbjct: 68   MPMSVEEGPECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTC 115



>gb|AAK44118.1|AF370303_1 (AF370303) unknown protein [Arabidopsis thaliana]
          Length = 221

 Score = 57.0 bits (136), Expect = 3e-07
 Identities = 37/145 (25%), Positives = 71/145 (48%)
 Frame = +3

Query: 342 PESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSS 521
           P++   + +  +   L++   + + R  A+FALR+                  + L   S
Sbjct: 79  PKAANISSIHSMRESLLEETEEDYYRRLALFALRNHGGEDAINVII-------ESLGVES 131

Query: 522 ALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKF 701
           ++ R E AFV GQL    +I +L++ L +  E  MVR EAA+ALG + ++    + L++ 
Sbjct: 132 SMIRIEAAFVLGQLESKTAIASLSKILRDVKEHPMVRVEAAKALGFIADEKS-REVLQEL 190

Query: 702 LHDKEKVVRESCIVALDIAEYEKGE 776
             D + ++ + C  +L I E++  +
Sbjct: 191 SGDLDPIIAKGCDSSLSILEFKNSK 215



 Score = 39.7 bits (91), Expect = 0.053
 Identities = 23/86 (26%), Positives = 45/86 (51%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S++++ E A+ LGQ  +  A+  L ++L D+KE PM R              + ++L+E 
Sbjct: 131 SSMIRIEAAFVLGQLESKTAIASLSKILRDVKEHPMVRVEAAKALGFIADEKSREVLQEL 190

Query: 198 RDRKEEDISIVETCEIAIERIEWENS 275
               + D  I + C+ ++  +E++NS
Sbjct: 191 SG--DLDPIIAKGCDSSLSILEFKNS 214



>pir||T48045 hypothetical protein T12C14.230 - Arabidopsis thaliana
 emb|CAB82967.1| (AL162507) putative protein [Arabidopsis thaliana]
          Length = 342

 Score = 57.0 bits (136), Expect = 3e-07
 Identities = 37/145 (25%), Positives = 71/145 (48%)
 Frame = +3

Query: 342 PESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSS 521
           P++   + +  +   L++   + + R  A+FALR+                  + L   S
Sbjct: 200 PKAANISSIHSMRESLLEETEEDYYRRLALFALRNHGGEDAINVII-------ESLGVES 252

Query: 522 ALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVEDTLRKF 701
           ++ R E AFV GQL    +I +L++ L +  E  MVR EAA+ALG + ++    + L++ 
Sbjct: 253 SMIRIEAAFVLGQLESKTAIASLSKILRDVKEHPMVRVEAAKALGFIADEKS-REVLQEL 311

Query: 702 LHDKEKVVRESCIVALDIAEYEKGE 776
             D + ++ + C  +L I E++  +
Sbjct: 312 SGDLDPIIAKGCDSSLSILEFKNSK 336



 Score = 39.7 bits (91), Expect = 0.053
 Identities = 23/86 (26%), Positives = 45/86 (51%)
 Frame = +3

Query: 18  SALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRHXXXXXXXXXXWADNLDILREY 197
           S++++ E A+ LGQ  +  A+  L ++L D+KE PM R              + ++L+E 
Sbjct: 252 SSMIRIEAAFVLGQLESKTAIASLSKILRDVKEHPMVRVEAAKALGFIADEKSREVLQEL 311

Query: 198 RDRKEEDISIVETCEIAIERIEWENS 275
               + D  I + C+ ++  +E++NS
Sbjct: 312 SG--DLDPIIAKGCDSSLSILEFKNS 335



>pir||S33694 transcription elongation factor tfIIs - Sulfolobus acidocaldarius
 emb|CAA50073.1| (X70805) transcription associated protein [Sulfolobus acidocaldarius]
          Length = 111

 Score = 57.0 bits (136), Expect = 3e-07
 Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 1/112 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CG+++   K   + V +C  C   + +   +  +T             K ++ V +
Sbjct: 3    FCPKCGSMMMPRKENGKTVYKCSKCAYIDTENQKEAKITTVIKHS------AKAKTLVLA 56

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
             +  N   + T   +CP CG +E  +  +Q RSADE +T  Y C +CG  W E
Sbjct: 57   SDMPNPGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109



>sp|Q07271|RPOM_SULAC DNA-DIRECTED RNA POLYMERASE SUBUNIT M
          Length = 202

 Score = 57.0 bits (136), Expect = 3e-07
 Identities = 31/112 (27%), Positives = 51/112 (44%), Gaps = 1/112 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CG+++   K   + V +C  C   + +   +  +T             K ++ V +
Sbjct: 94   FCPKCGSMMMPRKENGKTVYKCSKCAYIDTENQKEAKITTVIKHS------AKAKTLVLA 147

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
             +  N   + T   +CP CG +E  +  +Q RSADE +T  Y C +CG  W E
Sbjct: 148  SDMPNPGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 200



>gb|AAK18841.1|AC082645_11 (AC082645) putative RNA polymerase I subunit [Oryza sativa]
          Length = 126

 Score = 57.0 bits (136), Expect = 3e-07
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
 Frame = -1

Query: 1206 VFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQ 1027
            +FC  CG LL   K        C  CG + +     +   +T+ +     +R++L+    
Sbjct: 10   LFCGVCGTLL---KFDSVRSASCPLCGFKRK--AKDIEGKETRYTVTAEDIRRELKLDPY 64

Query: 1026 SVEKHNLQTE------STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
             + +  L+ E      +T ++ C KC   E++Y T QLRSADEG TV Y C  C + +NE
Sbjct: 65   VILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNE 124

Query: 867  N 865
            N
Sbjct: 125  N 125



>pir||A55263 transcription-associated protein - Thermococcus celer
          Length = 110

 Score = 55.8 bits (133), Expect = 7e-07
 Identities = 35/110 (31%), Positives = 58/110 (51%), Gaps = 4/110 (3%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAE---NRDTGSKVTVTQTKPSDFPSFLRQKLQSS 1033
            FC  CGNL+   +  +R V     CG E   + +   + TV + +       ++ K    
Sbjct: 3    FCPKCGNLMLPDR--KRKVWVXRSCGYEEPFDEEKDREKTVIKQE-------VKHKPDEG 53

Query: 1032 VQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            +  +E+ +L+T  T   TCPKCG +   +  +Q R+ DE ST+ Y C +CG++W
Sbjct: 54   IVVIEQ-DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 106



>gb|AAF55918.1| (AE003736) CG13418 gene product [Drosophila melanogaster]
          Length = 120

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CG++LP  +  + NV+ C  C  E +       V   + S+F         S V +
Sbjct: 10   FCPSCGSILPELQ-VKGNVI-CYNCKKEFQPD-----VYSGEKSEFTIHFNTYDPSKVFN 62

Query: 1023 VEKHNLQTES---TAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNENN 862
              K   ++++        CPKC  +++ Y T+QLRSADEG TV ++C +C    +EN+
Sbjct: 63   RTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120



>gb|AAK40629.1| (AE006664) DNA-directed RNA polymerase, subunit M (rpoM-1)
            [Sulfolobus solfataricus]
          Length = 114

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 31/112 (27%), Positives = 50/112 (43%), Gaps = 3/112 (2%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  C +++   K   +NV RC  CG E     + + VT        S ++  ++     
Sbjct: 6    FCPKCNSMMVPKKSNGKNVYRCTKCGYEKEVPETTIVVT--------SKVKHSIKEKTLV 57

Query: 1023 VEKHNLQT--ESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            +E+  + +  +      CP C  +E  +  +Q R ADE  T  Y C +CG  W E
Sbjct: 58   LEEEEMPSGAQKIKGVLCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 112



>emb|CAB66386.1| (AJ271332) archaeal transcription factor S [Methanococcus
            thermolithotrophicus]
          Length = 105

 Score = 54.3 bits (129), Expect = 2e-06
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  C N++    G     L+C  CG E  + G++    +         L++K+++  Q 
Sbjct: 4    FCPKCNNIMLPKNGR----LKCTVCGFEE-ELGNRTEEYE---------LKEKIEAKKQE 49

Query: 1023 VEK-HNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            V    ++ T  T    CP CG  E  +   Q R ADE  T  Y C +CG++W E
Sbjct: 50   VTVIEDVDTLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103



>ref|NP_070063.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus]
 sp|O29033|RPOM_ARCFU DNA-DIRECTED RNA POLYMERASE SUBUNIT M
 pir||B69404 transcription-associated protein TFIIS homolog - Archaeoglobus
            fulgidus
 gb|AAB90009.1| (AE001019) transcription-associated protein TFIIS [Archaeoglobus
            fulgidus]
          Length = 103

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  C +L+      Q + L C  CG E     S+  V +           ++ +  V  
Sbjct: 3    FCPKCKSLMIY----QGDKLVCRKCGYEKEADDSEELVIKV----------ERNKEDVPV 48

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            +E  NL+T  T    CP CG  E  +   QLR+ADE     + C +CG +W E
Sbjct: 49   IEGENLKTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101



>gb|AAB82597.1| (AF026272) YJR070c-like protein [Babesia bigemina]
          Length = 121

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 35/109 (32%), Positives = 49/109 (44%)
 Frame = +3

Query: 345 ESDKEAEVEDLGRKLMDTNADLFSRYRAMFALRDLASXXXXXXXXXXXXXXXKGLSDSSA 524
           E   + + E L + L   +  L  + RA++  RDL S                      A
Sbjct: 15  EEFSKPDAELLSKILFSPDVKLSLQLRALYFCRDLKSSECATLLKKALDVHY------DA 68

Query: 525 LFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEK 671
             RHEIA+V GQ     +   L + L + NE  MVRHEAAEA+ ++G K
Sbjct: 69  FLRHEIAYVIGQAGCEEASDVLVKLLEDENEDPMVRHEAAEAVAAIGGK 117



 Score = 40.4 bits (93), Expect = 0.031
 Identities = 19/38 (50%), Positives = 24/38 (63%)
 Frame = +3

Query: 21  ALLKHELAYCLGQTGNTAAVKPLRQVLSDLKEDPMCRH 134
           A L+HE+AY +GQ G   A   L ++L D  EDPM RH
Sbjct: 68  AFLRHEIAYVIGQAGCEEASDVLVKLLEDENEDPMVRH 105



>gb|AAF79907.1|AC022472_16 (AC022472) Contains a weak similarity to transcription elongation
            factor S-II from Drosophila melanogaster gi|135660 and
            contains a transcription factor S-II domain PF|01096.
            [Arabidopsis thaliana]
          Length = 122

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
 Frame = -1

Query: 1167 KGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTA 988
            K  + ++L C  CG       + + +  TK ++ P  L +  ++  + ++K+   T +T 
Sbjct: 29   KSRESDILFCNLCG-------TMLVLKSTKYAECP--LCETTRNGKEIIDKNLAYTVTTE 79

Query: 987  -HETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
              + C KC   E+ YTT Q RSADEG T  Y+C  CG+ + E
Sbjct: 80   IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121



>gb|AAF57437.1| (AE003791) CG10438 gene product [Drosophila melanogaster]
          Length = 108

 Score = 49.7 bits (117), Expect = 5e-05
 Identities = 35/114 (30%), Positives = 48/114 (41%), Gaps = 3/114 (2%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 1030
            L FC  CGN+L   + T  +   C  C   ++      T T         F R K    V
Sbjct: 2    LFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIRRKISTKT---------FPRLKEVDHV 52

Query: 1029 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 868
               +      +ST  E CP CG +   +  +Q RSADE  T  Y C   EC ++W +
Sbjct: 53   LGGKAAWENVDSTDAE-CPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108



>ref|XP_007933.2| polymerase (RNA) III (DNA directed) polypeptide K (12.3 kDa) [Homo
            sapiens]
 gb|AAK61210.1|AE006462_2 (AE006462) RNA polymerase III subunit CII [Homo sapiens]
          Length = 108

 Score = 49.3 bits (116), Expect = 7e-05
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 1030
            L+FC  CGN L   +G + +   C  C   +  T     VT  K      + + K    V
Sbjct: 2    LLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRK---VTNRK------YPKLKEVDDV 52

Query: 1029 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 868
                      +STA E+CPKC      +  +Q RSADE  T  Y C   +CG+ W +
Sbjct: 53   LGGAAAWENVDSTA-ESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108



>ref|NP_057394.1| polymerase (RNA) III (DNA directed) polypeptide K (12.3 kDa); RNA
            polymerase III subunit (hRPC11) [Homo sapiens]
 gb|AAD31424.1|AF126531_1 (AF126531) putative DNA-directed RNA polymerase III C11 subunit [Homo
            sapiens]
 gb|AAF18268.1|AF051316_1 (AF051316) RNA polymerase III subunit [Homo sapiens]
 gb|AAG43123.1|AF060223_1 (AF060223) My010 protein [Homo sapiens]
          Length = 108

 Score = 49.3 bits (116), Expect = 7e-05
 Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 3/114 (2%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 1030
            L+FC  CGN L   +G + +   C  C   +  T     VT  K      + + K    V
Sbjct: 2    LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRK---VTNRK------YPKLKEVDDV 52

Query: 1029 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 868
                      +STA E+CPKC      +  +Q RSADE  T  Y C   +CG+ W +
Sbjct: 53   LGGAAAWENVDSTA-ESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108



>emb|CAC12135.1| (AL445066) probable transcription-associated protein TFIIS
            [Thermoplasma acidophilum]
          Length = 100

 Score = 48.9 bits (115), Expect = 9e-05
 Identities = 32/113 (28%), Positives = 50/113 (43%), Gaps = 1/113 (0%)
 Frame = -1

Query: 1206 VFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQ 1027
            +FC  CG+L+    G       C  CG E       + +  +K +D  + + +      +
Sbjct: 1    MFCPKCGSLMTPVNGKYV----CPSCGYEISKNKETIKIV-SKSADKETIMIK------E 49

Query: 1026 SVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
             V    L +++     CP+C  +  +Y   Q RSADE  T  Y+C ECG  W E
Sbjct: 50   EVSAEPLDSDAV----CPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99



>dbj|BAB32384.1| (AK021353) putative [Mus musculus]
          Length = 108

 Score = 48.9 bits (115), Expect = 9e-05
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 1030
            L+FC  CGN L   +G + +   C  C   +  T     VT  K      + + K    V
Sbjct: 2    LLFCPGCGNGLIVVEGQRCHRFACNTCPYVHNITRK---VTNRK------YPKLKEVDDV 52

Query: 1029 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 868
                      +STA E CPKC      +  +Q RSADE  T  Y C   +CG+ W +
Sbjct: 53   LGGAAAWENVDSTA-EPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108



>ref|NP_080177.1| RIKEN cDNA 1500004O14 gene [Mus musculus]
 dbj|BAB23846.1| (AK005152) putative [Mus musculus]
 dbj|BAB27239.1| (AK010875) putative [Mus musculus]
          Length = 108

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSV 1030
            L+FC  CGN L   +G + +   C  C   +  T     VT  K      + + K    V
Sbjct: 2    LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRK---VTNRK------YPKLKEVDDV 52

Query: 1029 QSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 868
                      +STA E CPKC      +  +Q RSADE  T  Y C   +CG+ W +
Sbjct: 53   LGGAAAWENVDSTA-EPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108



>ref|NP_010330.1| TFIIS-like small Pol III subunit C11; Rpc11p [Saccharomyces
            cerevisiae]
 sp|Q04307|RPCZ_YEAST DNA-DIRECTED RNA POLYMERASES III 12.5 KDA POLYPEPTIDE
 pir||S54031 hypothetical protein YDR045c - yeast (Saccharomyces cerevisiae)
 emb|CAA89076.1| (Z49209) unknown [Saccharomyces cerevisiae]
 gb|AAD12060.1| (AF108188) RNA polymerase III C11 subunit [Saccharomyces cerevisiae]
          Length = 110

 Score = 48.5 bits (114), Expect = 1e-04
 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
 Frame = -1

Query: 1209 LVFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPS-----FLRQK 1045
            L FC  C N+L  T G                D+G      ++ P +FP      + R+K
Sbjct: 2    LSFCPSCNNMLLITSG----------------DSGVYTLACRSCPYEFPIEGIEIYDRKK 45

Query: 1044 L-QSSVQSVEKHNLQTESTAHETCPK---CGREEVKYTTVQLRSADEGSTVIYSC-ECGN 880
            L +  V  V              CP    CG E   +  +Q+RSADE  T  Y C  CG+
Sbjct: 46   LPRKEVDDVLGGGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGH 105

Query: 879  SWNEN 865
             W EN
Sbjct: 106  RWKEN 110



>gb|AAF89697.1|AF170279_1 (AF170279) phycoerythrobilin lyase subunit CpeF [Fremyella
           diplosiphon]
          Length = 303

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 31/91 (34%), Positives = 51/91 (55%)
 Frame = +3

Query: 507 LSDSSALFRHEIAFVFGQLSHPASIPALTEALSNTNEASMVRHEAAEALGSLGEKDGVED 686
           L+D  AL R E A   GQ+++P S+P L  A+ +T+    VR  A  +LG +G++     
Sbjct: 214 LTDPEALIRTEAAAALGQVNYPPSVPHLILAIHDTD--LDVRKAAINSLGKIGDR-AANK 270

Query: 687 TLRKFLHDKEKVVRESCIVALDIAEYEKGED 779
            L+  L+D+++VVR    +A+   E +  ED
Sbjct: 271 PLQALLNDEQEVVRVLAKLAIAQIERQSEED 301



>gb|AAD15481.1| (AC006266) putative DNA-directed RNA polymerase subunit [Arabidopsis
            thaliana]
 emb|CAB77946.1| (AL161508) putative DNA-directed RNA polymerase subunit [Arabidopsis
            thaliana]
          Length = 106

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 30/112 (26%), Positives = 50/112 (43%), Gaps = 2/112 (1%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CGNLL    G         C    N +   ++   Q             ++ S++ 
Sbjct: 3    FCPTCGNLLRYEGGGSSRFFCSTCPYVANIERRVEIKKKQLL-----------VKKSIEP 51

Query: 1023 V-EKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            V  K ++ T +     CP+CG ++  + ++Q+RSADE  +  Y C +C  +W E
Sbjct: 52   VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105



>pdb|1QYP|    Thermococcus Celer Rpb9, Nmr, 25 Structures
          Length = 57

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 20/48 (41%), Positives = 31/48 (63%), Gaps = 1/48 (2%)
 Frame = -1

Query: 1017 KHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            + +L+T  T   TCPKCG +   +  +Q R+ DE ST+ Y C +CG++W
Sbjct: 5    EQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53



>gb|AAG18974.1| (AE004998) DNA-directed RNA-polymerase subunit M; RpoM [Halobacterium
            sp. NRC-1]
          Length = 104

 Score = 48.1 bits (113), Expect = 1e-04
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAEN-RDTGSKVTVTQTKPSDFPSFLRQKLQSSVQ 1027
            FC DCG+++ A       +  C  CG +  +D  +   VT+ +         +     V 
Sbjct: 3    FCDDCGSMMKADD----ELWVCSSCGHKQPKDPSASFVVTEGQ--------EETEVVDVS 50

Query: 1026 SVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNENN 862
              +   L T S     CP C  +E  +   Q+RSADE  T  + C EC + W E++
Sbjct: 51   DAQDRGLPTTSVV---CPDCDNDEAHWYMQQIRSADESETRFFICTECEHRWREDD 103



>ref|NP_111261.1| DNA-directed RNA polymerase subunit M [Thermoplasma volcanium]
          Length = 100

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
 Frame = -1

Query: 1206 VFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQ 1027
            +FC  CG+L+    G  R V  C  CG E       + +           +R+++ +   
Sbjct: 1    MFCPKCGSLMTPVNG--RYV--CPSCGYEVSKKKEDLKIVNKSNDKETIMIREEVSAE-- 54

Query: 1026 SVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
                     +S A   CP+C  +  +Y   Q RSADE  T  Y+C ECG  W E
Sbjct: 55   -------PLDSDA--ICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99



>dbj|BAB59895.1| (AP000993) transcription factor [TFIIS/RPB9] [Thermoplasma volcanium]
          Length = 106

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 33/113 (29%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
 Frame = -1

Query: 1206 VFCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQ 1027
            +FC  CG+L+    G  R V  C  CG E       + +           +R+++ +   
Sbjct: 7    MFCPKCGSLMTPVNG--RYV--CPSCGYEVSKKKEDLKIVNKSNDKETIMIREEVSAE-- 60

Query: 1026 SVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
                     +S A   CP+C  +  +Y   Q RSADE  T  Y+C ECG  W E
Sbjct: 61   -------PLDSDA--ICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105



>pir||E71618 Zn-ribbon transcription factor (TFIIS family) PFB0290c - malaria
            parasite (Plasmodium falciparum)
 gb|AAC71847.1| (AE001385) Zn-ribbon transcription factor (TFIIS family) [Plasmodium
            falciparum]
          Length = 106

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 21/48 (43%), Positives = 28/48 (57%), Gaps = 1/48 (2%)
 Frame = -1

Query: 1011 NLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            N +  S     CPKC  +E  + T+Q+RSADE ST+ Y C +C   W E
Sbjct: 58   NNKNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106



>pir||PS0180 transcription elongation factor S-II-related protein L122, hepatic -
            mouse (fragment)
          Length = 289

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G +RNVL     GA + +  +K+T  +    +         Q +++  +       
Sbjct: 189  PRNPGLRRNVLS----GAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 244

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            +T    C KC ++   Y  VQ RSADE  T    C ECGN W
Sbjct: 245  TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 286



>dbj|BAB22010.1| (AK002319) putative [Mus musculus]
          Length = 347

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G +RNVL     GA + +  +K+T  +    +         Q +++  +       
Sbjct: 247  PRNPGLRRNVLS----GAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 302

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            +T    C KC ++   Y  VQ RSADE  T    C ECGN W
Sbjct: 303  TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 344



>emb|CAA11392.1| (AJ223472) transcription elongation factor TFIIS.h [Mus musculus]
 dbj|BAB25037.1| (AK007437) putative [Mus musculus]
          Length = 347

 Score = 47.0 bits (110), Expect = 3e-04
 Identities = 30/101 (29%), Positives = 44/101 (42%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G +RNVL     GA + +  +K+T  +    +         Q +++  +       
Sbjct: 247  PRNPGLRRNVLS----GAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 302

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            +T    C KC ++   Y  VQ RSADE  T    C ECGN W
Sbjct: 303  TTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 344



>gb|AAF71710.1|AF220261_1 (AF220261) transcription elongation factor TFIIS [Drosophila virilis]
          Length = 324

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 27/101 (26%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G + N +    CGA +    +K+T  +    +      + ++ ++   +   +Q  
Sbjct: 224  PKNPGLRSNFM----CGAVSAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 279

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
             T    C KC +    Y  +Q RSADE  T    C ECGN W
Sbjct: 280  KTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 321



>gb|AAA40418.1| (M18209) transcription factor S-II [Mus musculus]
          Length = 266

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 172  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 227

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 228  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 263



>pir||S26831 transcription elongation factor IIS - human
 emb|CAA40484.1| (X57198) transcription elongation  factor [Homo sapiens]
          Length = 280

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 186  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 241

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 242  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 277



>gb|AAF60910.1| (AC024880) contains similarity to SW:RPB9_DROME [Caenorhabditis
            elegans]
          Length = 486

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC +C N+L   +  +  VL   C   E+R+  +        P  + + L  ++    Q 
Sbjct: 377  FCPECNNMLYPREDKESRVLMYSCRNCEHREVAAN-------PCIYVNKLVHEIDELTQI 429

Query: 1023 VEK--HNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC---ECGNSWNE 868
            V    H+     T    CP CG+ +  +   Q + A+E   + Y C   +C + W E
Sbjct: 430  VGDIIHDPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRWTE 486



>dbj|BAA00768.1| (D00925) ORF2 [Mus musculus]
          Length = 235

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 141  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 196

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 197  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 232



>sp|P23713|TFSL_MOUSE TRANSCRIPTION FACTOR S-II-RELATED PROTEIN 3
 pir||JX0167 transcription elongation factor S-II-related protein L121, hepatic -
            mouse
          Length = 235

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 141  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 196

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 197  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 232



>emb|CAA11393.1| (AJ223473) transcription elongation factor TFIIS.h [Homo sapiens]
          Length = 320

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 30/101 (29%), Positives = 43/101 (41%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G +RNVL     GA +    +K+T  +    +         Q +++  +       
Sbjct: 220  PRNPGLRRNVLS----GAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 275

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            +T    C KC ++   Y  VQ RSADE  T    C ECGN W
Sbjct: 276  TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 317



>ref|NP_035671.1| transcription elongation factor A (SII), 1 [Mus musculus]
 sp|P10712|TFS2_MOUSE TRANSCRIPTION ELONGATION FACTOR S-II (TRANSCRIPTION ELONGATION FACTOR
            A)
 pir||A29950 transcription elongation factor IIS - mouse
 gb|AAA40419.1| (M18210) transcription factor S-II [Mus musculus]
 gb|AAH06022.1|AAH06022 (BC006022) transcription elongation factor A (SII) 1 [Mus musculus]
          Length = 301

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 207  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 262

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 263  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298



>pir||JC1170 transcription elongation factor SII - human
 gb|AAA61138.1| (M81601) transcription elongation factor SII [Homo sapiens]
          Length = 301

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 207  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 262

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 263  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298



>ref|NP_006747.1| transcription elongation factor A (SII), 1 [Homo sapiens]
 sp|P23193|TFS2_HUMAN TRANSCRIPTION ELONGATION FACTOR S-II (TRANSCRIPTION ELONGATION FACTOR
            A)
 pir||S17361 transcription elongation factor IIS (clone pHIIS 1) - human
 emb|CAA44470.1| (X62585) transcription elongation  factor [Homo sapiens]
          Length = 301

 Score = 46.2 bits (108), Expect = 6e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 207  RKNVL----CGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFT 262

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 263  CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298



>pir||A53004 transcription elongation factor S-II - rat
 dbj|BAA02310.1| (D12927) transcription elongation factor S-II [Rattus sp.]
          Length = 299

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 29/97 (29%), Positives = 43/97 (43%), Gaps = 1/97 (1%)
 Frame = -1

Query: 1164 GTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAH 985
            G +RNVL    CGA      + +T  +    +     +   + +++  +        T  
Sbjct: 203  GLRRNVL----CGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDL 258

Query: 984  ETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
             TC KC ++   YT VQ RS+DE  T    C ECGN W
Sbjct: 259  FTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296



>ref|NP_033352.1| transcription elongation factor A (SII), 2 [Mus musculus]
 pir||JC5430 transcription elongation factor S-II-T1, testis-specific - mouse
 dbj|BAA19752.1| (D86081) S-II-T1 [Mus musculus]
 dbj|BAA82313.1| (AB010271) transcription elongation factor [Mus musculus]
          Length = 299

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 29/97 (29%), Positives = 43/97 (43%), Gaps = 1/97 (1%)
 Frame = -1

Query: 1164 GTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAH 985
            G +RNVL    CGA      + +T  +    +     +   + +++  +        T  
Sbjct: 203  GLRRNVL----CGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDL 258

Query: 984  ETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
             TC KC ++   YT VQ RS+DE  T    C ECGN W
Sbjct: 259  FTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRW 296



>pir||S72365 transcription elongation factor TFIIS.oB - African clawed frog
          Length = 303

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            +RNVL    CG    D  +++T  +    +     +   + +++  +        T   +
Sbjct: 209  RRNVL----CGNIAPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTETDLFS 264

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 265  CGKCKKKNCTYTQVQTRSADEPMTTFVFCNECGNRW 300



>gb|AAF97332.1|AC023628_13 (AC023628) Similar to DNA-directed RNA polymerase subunit M
            [Arabidopsis thaliana]
          Length = 106

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = -1

Query: 1203 FCTDCGNLLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQS 1024
            FC  CGNLL    G       C  C          V   Q +       L  K +S    
Sbjct: 3    FCPTCGNLLRYEGGGNSRFF-CSTC--------PYVAYIQRQVEIKKKQLLVK-KSIEAV 52

Query: 1023 VEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSWNE 868
            V K ++ T +     CP+CG ++  + ++Q+RSADE  +  Y C +C  +W E
Sbjct: 53   VTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105



>gb|AAF44916.1|AE003406_121 (AE003416) symbol=TfIIS; synonym=BG:DS00929.12;
            match=method:''sim4'', score:''990.0'',
            desc:''GenBank::L26091:Drosophila melanogaster
            transcription elongation factor (TfIIS) gene, complete
            cds. CDS:1124..1915; PID:g416355.'', species:''Drosophila
            mela>
          Length = 263

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G + N +    CGA      +K+T  +    +      + ++ ++   +   +Q  
Sbjct: 163  PKNPGLRGNFM----CGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 218

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
             T    C KC +    Y  +Q RSADE  T    C ECGN W
Sbjct: 219  KTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 260



>pir||S55899 transcription elongation factor EF-TfIIS - fruit fly  (Drosophila
            melanogaster)
          Length = 313

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G + N +    CGA      +K+T  +    +      + ++ ++   +   +Q  
Sbjct: 213  PKNPGLRGNFM----CGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 268

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
             T    C KC +    Y  +Q RSADE  T    C ECGN W
Sbjct: 269  KTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310



>sp|P20232|TFS2_DROME TRANSCRIPTION ELONGATION FACTOR S-II (RNA POLYMERASE II ELONGATION
            FACTOR DMS-II) (TFIIS)
 pir||S12106 transcription elongation factor DmS-II - fruit fly (Drosophila
            melanogaster)
 emb|CAA37710.1| (X53670) RNA polymerase II elongation factor DmS-II [Drosophila
            melanogaster]
 gb|AAA92864.2| (L26091) transcription elongation factor [Drosophila melanogaster]
 gb|AAF53436.1| (AE003646) TfIIS gene product [Drosophila melanogaster]
          Length = 313

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 27/101 (26%), Positives = 42/101 (40%), Gaps = 1/101 (0%)
 Frame = -1

Query: 1176 PATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTE 997
            P   G + N +    CGA      +K+T  +    +      + ++ ++   +   +Q  
Sbjct: 213  PKNPGLRGNFM----CGAVTAKQLAKMTPEEMASDEMKKLREKFVKEAINDAQLATVQGT 268

Query: 996  STAHETCPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
             T    C KC +    Y  +Q RSADE  T    C ECGN W
Sbjct: 269  KTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310



>pir||S34159 transcription elongation factor IIS - human
 emb|CAA51940.1| (X73534) transcription elongation factor [Homo sapiens]
          Length = 301

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 207  RKNVL----CGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQTDLFT 262

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 263  CGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRW 298



>ref|XP_003202.2| transcription elongation factor A (SII), 1 [Homo sapiens]
          Length = 301

 Score = 45.8 bits (107), Expect = 7e-04
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            ++NVL    CG    D  +++T  +    +     +   + +++  +        T   T
Sbjct: 207  RKNVL----CGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQTDLFT 262

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 263  CGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRW 298



>emb|CAA24928.1| (X00047) reading frame PPR2 [Saccharomyces cerevisiae]
          Length = 128

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
 Frame = -1

Query: 1065 PSFLRQKLQS----SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIY 898
            P+ L+QK++     ++ + +   ++   T   TC KC  ++V Y  +Q RSADE  T   
Sbjct: 57   PAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFC 116

Query: 897  SCE-CGNSW 874
            +CE CGN W
Sbjct: 117  TCEACGNRW 125



>emb|CAA66256.1| (X97666) TFIIS elongation factor [Xenopus laevis]
          Length = 303

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1158 QRNVLRCECCGAENRDTGSKVTVTQTKPSDFPSFLRQKLQSSVQSVEKHNLQTESTAHET 979
            +RNVL    CG    D  +++T  +    +     +   + +++  +        T   +
Sbjct: 209  RRNVL----CGNIAPDFFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTETDLFS 264

Query: 978  CPKCGREEVKYTTVQLRSADEGSTVIYSC-ECGNSW 874
            C KC ++   YT VQ RSADE  T    C ECGN W
Sbjct: 265  CGKCKKKNCTYTQVQTRSADEPMTTFVFCNECGNRW 300



>gb|AAA34580.1| (M60770) DST1 [Saccharomyces cerevisiae]
 gb|AAA88734.1| (M36724) DNA strand transferase alpha [Saccharomyces cerevisiae]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
 Frame = -1

Query: 1065 PSFLRQKLQS----SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIY 898
            P+ L+QK++     ++ + +   ++   T   TC KC  ++V Y  +Q RSADE  T   
Sbjct: 238  PAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFC 297

Query: 897  SCE-CGNSW 874
            +CE CGN W
Sbjct: 298  TCEACGNRW 306



>ref|NP_011472.1| RNA polymerase II elongation factor; Dst1p [Saccharomyces cerevisiae]
 sp|P07273|TFS2_YEAST TRANSCRIPTION ELONGATION FACTOR S-II (DNA STRAND TRANSFER PROTEIN
            ALPHA) (STP-ALPHA) (DNA STRAND TRANSFERASE 1) (PYRIMIDINE
            PATHWAY REGULATORY PROTEIN 2)
 pir||A42921 transcription elongation factor S-II - yeast (Saccharomyces
            cerevisiae)
 dbj|BAA02046.1| (D12478) transcriptional elongation factor S-II [Saccharomyces
            cerevisiae]
 emb|CAA96744.1| (Z72565) ORF YGL043w [Saccharomyces cerevisiae]
          Length = 309

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 24/64 (37%), Positives = 38/64 (58%), Gaps = 5/64 (7%)
 Frame = -1

Query: 1065 PSFLRQKLQS----SVQSVEKHNLQTESTAHETCPKCGREEVKYTTVQLRSADEGSTVIY 898
            P+ L+QK++     ++ + +   ++   T   TC KC  ++V Y  +Q RSADE  T   
Sbjct: 238  PAPLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFC 297

Query: 897  SCE-CGNSW 874
            +CE CGN W
Sbjct: 298  TCEACGNRW 306



>sp|O13896|RPCZ_SCHPO DNA-DIRECTED RNA POLYMERASES III 12.5 KDA POLYPEPTIDE
 pir||T38145 DNA-directed RNA polymerase (EC 2.7.7.6) III chain C11 [validated] -
            fission yeast (Schizosaccharomyces pombe)
 emb|CAB16575.1| (Z99295) dna-directed rna polymerase iii 12.5 kd polypeptide
            [Schizosaccharomyces pombe]
 gb|AAD03488.1| (AF027823) RNA polymerase subunit [Schizosaccharomyces pombe]
 gb|AAD31425.1|AF126532_1 (AF126532) putative DNA-directed RNA polymerase III C11 subunit
            [Schizosaccharomyces pombe]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 37/113 (32%), Positives = 50/113 (43%), Gaps = 13/113 (11%)
 Frame = -1

Query: 1203 FCTDCGN-LLPATKGTQRNVLRCECCGAENRDTGSKVTVTQTKPSDFP--SFLRQKLQSS 1033
            FC  CGN L+ A     RN   C