The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr_contig0008.seq Fgr_contig0008
(1226 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35769|E321_ADE1A EARLY E3 20.2 KD GLYCOPROTEIN >gi|4193... 32 8.0
dbj|BAA97172.1| (AB018117) gene_id:MQL5.24~pir||T02421~simi... 32 8.0
>sp|P35769|E321_ADE1A EARLY E3 20.2 KD GLYCOPROTEIN
pir||G44057 early E3 20.6K glycoprotein - human adenovirus 11 (strain BC34)
Length = 183
Score = 32.3 bits (72), Expect = 8.0
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 206 PTQVPAPGPTTIEVTIVAKGTL-HPTSTNIQYRTVQKMNCVSTSIKTMVDLV 358
P+ PAP TT + A T+ +PT T + RTV +STS +++ +V
Sbjct: 99 PSTTPAPRKTTFSSSSAANNTISNPTFTALLKRTVNNSTTISTSTISIIAVV 150
>dbj|BAA97172.1| (AB018117) gene_id:MQL5.24~pir||T02421~similar to unknown protein
[Arabidopsis thaliana]
Length = 598
Score = 32.3 bits (72), Expect = 8.0
Identities = 23/101 (22%), Positives = 40/101 (38%)
Frame = +1
Query: 550 DREEEPHSDSSWGCLEEHQDGRYEVADSDTDRNSHKLTIGEMTARKNLINFAMSIVSLSS 729
D ++ + SW CL+ H+ GR + A S +R+ H G + N + SS
Sbjct: 9 DGNKQRRNGDSWHCLDSHKHGRSKSASS--ERDLHTSGNGASQSANNFTR-----MQASS 61
Query: 730 IQNTSRAVQKGRNNNKFPNNSTAHKIKHQPWPRRIRDKHIR 852
+Q T+ K +N + + R + H+R
Sbjct: 62 VQTTANKRPKPLHNCQMLTKNNVSSNDRASLERDVEQLHLR 102
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,994,983
Number of Sequences: 705144
Number of extensions: 10956983
Number of successful extensions: 32765
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32727
length of database: 222,175,239
effective HSP length: 121
effective length of database: 136,852,815
effective search space used: 39276757905
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)