Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010997.1| 40S ribosomal protein S24A; Rps24ap [Sacch... 131 7e-30
sp|O13784|R24A_SCHPO 40S RIBOSOMAL PROTEIN S24A >gi|7489982... 119 3e-26
pir||T43365 ribosomal protein S24 homolog - fission yeast ... 118 7e-26
sp|O59865|R24B_SCHPO 40S RIBOSOMAL PROTEIN S24B >gi|7489983... 118 7e-26
sp|P14249|RS24_RHIRA 40S RIBOSOMAL PROTEIN S24 >gi|71040|pi... 116 2e-25
gb|AAG23693.1| (AF298769) 40S ribosomal protein S24 [Zea mays] 102 3e-21
prf||1909359A ribosomal protein S19 [Solanum tuberosum] 102 3e-21
sp|Q9SS17|RS24_ARATH 40S RIBOSOMAL PROTEIN S24 >gi|12322851... 100 1e-20
sp|O42387|RS24_FUGRU 40S RIBOSOMAL PROTEIN S24 >gi|2369810|... 100 1e-20
emb|CAB40968.1| (AJ238272) 40S ribosomal protein S24 [Oryzi... 100 2e-20
ref|NP_001017.1| ribosomal protein S24 [Homo sapiens] >gi|1... 98 7e-20
dbj|BAB27225.1| (AK010856) putative [Mus musculus] 98 7e-20
dbj|BAB22143.1| (AK002495) putative [Mus musculus] >gi|1284... 97 1e-19
dbj|BAB22498.1| (AK002986) putative [Mus musculus] 97 1e-19
pir||JC4671 ribosomal protein S24a - human >gi|311297|emb|C... 97 2e-19
dbj|BAB26046.1| (AK009048) putative [Mus musculus] 97 2e-19
ref|NP_035427.1| ribosomal protein S24 [Mus musculus] >gi|5... 97 2e-19
gb|AAK62437.1|AF386992_1 (AF386992) Unknown protein [Arabid... 97 2e-19
gb|AAF46871.1| (AE003458) CG3751 gene product [Drosophila m... 96 3e-19
sp|P02377|RS24_XENLA 40S RIBOSOMAL PROTEIN S24 (S19) >gi|71... 96 3e-19
pir||T32583 hypothetical protein T07A9.11 - Caenorhabditis ... 94 2e-18
emb|CAB64902.1| (AJ245654) 40S ribosomal protein S19 [Cyano... 93 2e-18
gb|AAK16518.1|AF331158_1 (AF331158) ribosomal protein S24 [... 90 2e-17
gb|AAF64318.1|AF252289_1 (AF252289) 40S ribosomal protein S... 75 6e-13
ref|NP_113450.1| 40S ribosomal protein S24 [Guillardia thet... 55 5e-07
ref|NP_127362.1| SSU ribosomal protein S24E [Pyrococcus aby... 47 2e-04
sp|P19953|RS24_HALMA 30S RIBOSOMAL PROTEIN S24E (HS15) (E1.... 43 0.003
ref|NP_069943.1| SSU ribosomal protein S24E (rps24E) [Archa... 41 0.010
sp|O26367|RS24_METTH 30S RIBOSOMAL PROTEIN S24E >gi|7440533... 39 0.066
ref|NP_111002.1| 30S ribosomal protein S24E [Thermoplasma v... 38 0.086
sp|Q9YCY0|RS24_AERPE 30S RIBOSOMAL PROTEIN S24E 38 0.086
pir||E72714 probable ribosomal protein S24 APE1132 - Aeropy... 38 0.086
gb|AAG20206.1| (AE005097) 30S ribosomal protein S24E; Rps24... 37 0.25
gb|AAA45882.1| (M14976) IB4WY-1 polypeptide [Human herpesvi... 35 0.73
gb|AAA45901.1| (M26282) protein T1 [Human herpesvirus 4] 35 0.73
pir||S77938 EBNA-LP protein - human herpesvirus 4 >gi|33040... 35 0.73
emb|CAC12220.1| (AL445066) ribosomal protein S24 related pr... 34 1.2
ref|XP_017442.1| similar to heterogeneous nuclear ribonucle... 33 2.1
gb|AAA88328.1| (J03842) unknown protein [Neisseria gonorrho... 33 2.8
gb|AAA66537.1| (M12553) unknown protein [Human herpesvirus 4] 32 4.7
gb|AAB23798.1| nuclear antigen 5, EBNA 5 {alternatively spl... 32 8.0
gb|AAB23799.1| nuclear antigen 5, EBNA 5 {alternatively spl... 32 8.0
>ref|NP_010997.1| 40S ribosomal protein S24A; Rps24ap [Saccharomyces cerevisiae]
ref|NP_012195.1| 40S ribosomal protein S24B; Rps24bp [Saccharomyces cerevisiae]
sp|P26782|RS24_YEAST 40S RIBOSOMAL PROTEIN S24 (RP50)
pir||S48410 ribosomal protein S24.e, cytosolic - yeast (Saccharomyces
cerevisiae)
emb|CAA86154.1| (Z38060) spliced ribosomal protein, len: 135, CAI: 0.76, similar to
RS24_HUMAN P16632 40S RIBOSOMAL PROTEIN S24 (S19)
[Saccharomyces cerevisiae]
gb|AAB64613.1| (U18814) Rps24eap: 40S ribosomal protein S24E (RP50) [Saccharomyces
cerevisiae]
Length = 135
Score = 131 bits (329), Expect = 7e-30
Identities = 62/95 (65%), Positives = 74/95 (77%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEA 319
+F D+LHPNRAN+SK+ELREKL +YKA+KD +SVFG RTQFGGGK+ GF LVY+S
Sbjct: 22 QFVVDVLHPNRANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLVYNSVAE 81
Query: 320 MKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
KKFEP YRLVR GLA K E+ASRQQR + + K
Sbjct: 82 AKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDK 116
>sp|O13784|R24A_SCHPO 40S RIBOSOMAL PROTEIN S24A
pir||T37838 40s ribosomal protein s24a - fission yeast (Schizosaccharomyces
pombe)
emb|CAB16217.1| (Z99162) 40s ribosomal protein s24a. [Schizosaccharomyces pombe]
Length = 134
Score = 119 bits (299), Expect(2) = 3e-26
Identities = 57/92 (61%), Positives = 69/92 (74%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
DILHP +ANISK +LREKLG +YK + FGLRT +GGG+TTGFAL+YD EAMKKF
Sbjct: 26 DILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKF 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQKG 427
EP YRLVRVG A ++ +RQQR Q+K +G
Sbjct: 86 EPHYRLVRVGHAEPIQKVARQQR--KQRKNRG 115
Score = 20.8 bits (42), Expect(2) = 3e-26
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 456 KQRKNRQKTLRGT 494
KQRKNR K + GT
Sbjct: 109 KQRKNRGKKVFGT 121
>pir||T43365 ribosomal protein S24 homolog - fission yeast (Schizosaccharomyces
pombe) (fragment)
dbj|BAA28751.1| (AB015168) ribosomal protein S24 homolog [Schizosaccharomyces
pombe]
Length = 138
Score = 118 bits (295), Expect(2) = 7e-26
Identities = 55/92 (59%), Positives = 70/92 (75%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
DILHP +AN+SK E+REKL +YK + + FGLRT FGGG++TGFAL+YDS E+MKKF
Sbjct: 30 DILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKF 89
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQKG 427
EP YRLVRVG A ++ +RQQR Q+K +G
Sbjct: 90 EPHYRLVRVGQAEPIQKVARQQR--KQRKNRG 119
Score = 20.8 bits (42), Expect(2) = 7e-26
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 456 KQRKNRQKTLRGT 494
KQRKNR K + GT
Sbjct: 113 KQRKNRGKKVFGT 125
>sp|O59865|R24B_SCHPO 40S RIBOSOMAL PROTEIN S24B
pir||T39730 40s ribosomal protein s24b - fission yeast (Schizosaccharomyces
pombe)
emb|CAB52805.1| (AL109846) 40s ribosomal protein s24b [Schizosaccharomyces pombe]
Length = 134
Score = 118 bits (295), Expect(2) = 7e-26
Identities = 55/92 (59%), Positives = 70/92 (75%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
DILHP +AN+SK E+REKL +YK + + FGLRT FGGG++TGFAL+YDS E+MKKF
Sbjct: 26 DILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKF 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQKG 427
EP YRLVRVG A ++ +RQQR Q+K +G
Sbjct: 86 EPHYRLVRVGQAEPIQKVARQQR--KQRKNRG 115
Score = 20.8 bits (42), Expect(2) = 7e-26
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 456 KQRKNRQKTLRGT 494
KQRKNR K + GT
Sbjct: 109 KQRKNRGKKVFGT 121
>sp|P14249|RS24_RHIRA 40S RIBOSOMAL PROTEIN S24
pir||R3UD24 ribosomal protein S24 - Rhizomucor racemosus
emb|CAA33608.1| (X15582) ribosomal protein [Mucor racemosus]
Length = 148
Score = 116 bits (291), Expect = 2e-25
Identities = 52/91 (57%), Positives = 73/91 (80%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D++HP AN+SK+ELR K+G +YKA K+ +SVFG +T FGGGKTTGFAL+YD+ EA+K F
Sbjct: 45 DVIHPGLANVSKDELRSKIGKMYKADKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNF 104
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RLVR+GLA +A + R+QR + ++K
Sbjct: 105 EPKHRLVRIGLA-EAPKGGRKQRKEKKNREK 134
>gb|AAG23693.1| (AF298769) 40S ribosomal protein S24 [Zea mays]
Length = 137
Score = 102 bits (255), Expect = 3e-21
Identities = 47/95 (49%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQK-DQISVFGLRTQFGGGKTTGFALVYDSPE 316
+F +++HP RAN+SK EL+E+L +Y+ + + I VF RT FGGGK+TGF L+YD+ E
Sbjct: 27 QFVLEVIHPGRANVSKAELKERLAKMYEVKDPNTIFVFKFRTHFGGGKSTGFGLIYDNLE 86
Query: 317 AMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
+ KKFEP+YRL+R GLATK E++ +Q + + +K
Sbjct: 87 SAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRAKK 122
>prf||1909359A ribosomal protein S19 [Solanum tuberosum]
Length = 133
Score = 102 bits (255), Expect = 3e-21
Identities = 49/95 (51%), Positives = 68/95 (71%), Gaps = 1/95 (1%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQK-DQISVFGLRTQFGGGKTTGFALVYDSPE 316
+F D+LHP RAN+SK EL+EKL +Y+ + + I VF RT FGGGK+TGF L+YDS E
Sbjct: 23 QFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVFKFRTHFGGGKSTGFGLIYDSVE 82
Query: 317 AMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
KK+EP+YRL+R GL TK E++ +Q + + +K
Sbjct: 83 NAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 118
>sp|Q9SS17|RS24_ARATH 40S RIBOSOMAL PROTEIN S24
gb|AAG51413.1|AC009465_13 (AC009465) putative ribosomal protein s19 or s24; 43956-42880
[Arabidopsis thaliana]
Length = 133
Score = 100 bits (250), Expect = 1e-20
Identities = 48/95 (50%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQK-DQISVFGLRTQFGGGKTTGFALVYDSPE 316
+F D+LHP RAN+SK EL+EKL +Y+ + + I VF RT FGGGK++GF L+YD+ E
Sbjct: 23 QFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVE 82
Query: 317 AMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
+ KKFEP+YRL+R GL TK E++ +Q + + +K
Sbjct: 83 SAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118
>sp|O42387|RS24_FUGRU 40S RIBOSOMAL PROTEIN S24
emb|CAA04728.1| (AJ001398) ribosomal protein S24 [Takifugu rubripes]
Length = 132
Score = 100 bits (249), Expect = 1e-20
Identities = 49/91 (53%), Positives = 64/91 (69%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D + VFG RTQFGGGKTTGFA+VYDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL R GL K ++ SR+QR + + K
Sbjct: 86 EPKHRLARHGLFEK-KKTSRKQRKERKNRMK 115
>emb|CAB40968.1| (AJ238272) 40S ribosomal protein S24 [Oryzias latipes]
Length = 132
Score = 100 bits (248), Expect = 2e-20
Identities = 49/91 (53%), Positives = 63/91 (68%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D + VFG RTQFGGGKTTGFA+VYDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL GL K ++ SR+QR Q + K
Sbjct: 86 EPKHRLATHGLYEK-KKTSRKQRTERQNRMK 115
>ref|NP_001017.1| ribosomal protein S24 [Homo sapiens]
ref|XP_011914.1| ribosomal protein S24 [Homo sapiens]
ref|NP_112374.1| ribosomal protein S24 [Rattus norvegicus]
sp|P16632|RS24_HUMAN 40S RIBOSOMAL PROTEIN S24 (S19)
pir||R3RT24 ribosomal protein S24, cytosolic [validated] - rat
pir||R3HY24 ribosomal protein S24 - golden hamster
pir||JH0213 ribosomal protein S24, cytosolic - human
emb|CAA36884.1| (X52658) ribosomal protein S19 (AA 1 - 133) [Mesocricetus auratus]
emb|CAA35918.1| (X51538) ribosomal protein S24 (AA 1-133) [Rattus rattus]
emb|CAA36684.1| (X52445) ribosomal protein S24 [Rattus norvegicus]
gb|AAA36588.1| (M31520) ribosomal protein S24 [Homo sapiens]
gb|AAB08006.1| (U12202) ribosomal protein S24 [Homo sapiens]
dbj|BAB25248.1| (AK007776) putative [Mus musculus]
dbj|BAB31355.1| (AK018704) putative [Mus musculus]
Length = 133
Score = 98.2 bits (243), Expect = 7e-20
Identities = 50/107 (46%), Positives = 68/107 (62%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQKGLVWLTLDNRQAAQEP 472
EP++RL R GL K ++ SR+QR + + K + N A ++P
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTAKANVGAGKKP 131
>dbj|BAB27225.1| (AK010856) putative [Mus musculus]
Length = 133
Score = 98.2 bits (243), Expect = 7e-20
Identities = 50/107 (46%), Positives = 68/107 (62%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQKGLVWLTLDNRQAAQEP 472
EP++RL R GL K ++ SR+QR + + K + N A ++P
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTAKANVGAGKKP 131
>dbj|BAB22143.1| (AK002495) putative [Mus musculus]
dbj|BAB25640.1| (AK008386) putative [Mus musculus]
Length = 134
Score = 97.4 bits (241), Expect = 1e-19
Identities = 50/110 (45%), Positives = 69/110 (62%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQKGLVWLTLDNRQAAQEPTKD 481
EP++RL R GL K ++ SR+QR + + K + N A ++ K+
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMKKVRGTAKANVGAGKKKPKE 134
>dbj|BAB22498.1| (AK002986) putative [Mus musculus]
Length = 131
Score = 97.4 bits (241), Expect = 1e-19
Identities = 47/91 (51%), Positives = 63/91 (68%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK+ D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKSTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL R GL K ++ SR+QR + + K
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMK 115
>pir||JC4671 ribosomal protein S24a - human
emb|CAA42829.1| (X60289) ribosomal protein S24 [Mus musculus]
gb|AAB08007.1| (U12202) ribosomal protein S24 [Homo sapiens]
gb|AAH00523.1|AAH00523 (BC000523) Similar to ribosomal protein S24 [Homo sapiens]
dbj|BAB23973.1| (AK005358) putative [Mus musculus]
dbj|BAB28304.1| (AK012537) putative [Mus musculus]
gb|AAH03149.1|AAH03149 (BC003149) ribosomal protein S24 [Homo sapiens]
Length = 130
Score = 97.1 bits (240), Expect = 2e-19
Identities = 47/91 (51%), Positives = 62/91 (67%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL R GL K ++ SR+QR + + K
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMK 115
>dbj|BAB26046.1| (AK009048) putative [Mus musculus]
Length = 132
Score = 97.1 bits (240), Expect = 2e-19
Identities = 47/91 (51%), Positives = 62/91 (67%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL R GL K ++ SR+QR + + K
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMK 115
>ref|NP_035427.1| ribosomal protein S24 [Mus musculus]
pir||S40161 ribosomal protein S24, cytosolic - mouse
emb|CAA50792.1| (X71972) ribosomal protein S24 [Mus musculus]
Length = 131
Score = 97.1 bits (240), Expect = 2e-19
Identities = 47/91 (51%), Positives = 62/91 (67%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL R GL K ++ SR+QR + + K
Sbjct: 86 EPKHRLARHGLYEK-KKTSRKQRKERKNRMK 115
>gb|AAK62437.1|AF386992_1 (AF386992) Unknown protein [Arabidopsis thaliana]
Length = 133
Score = 96.7 bits (239), Expect = 2e-19
Identities = 46/95 (48%), Positives = 67/95 (70%), Gaps = 1/95 (1%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQK-DQISVFGLRTQFGGGKTTGFALVYDSPE 316
+F D+LHP RAN+SK EL+EKL +Y+ + + I F RT FGGGK++G+ L+YD+ E
Sbjct: 23 QFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVE 82
Query: 317 AMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
KKFEP+YRL+R GL TK E++ +Q + + +K
Sbjct: 83 NAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKK 118
>gb|AAF46871.1| (AE003458) CG3751 gene product [Drosophila melanogaster]
Length = 131
Score = 96.3 bits (238), Expect = 3e-19
Identities = 45/92 (48%), Positives = 64/92 (68%), Gaps = 2/92 (2%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP ++++K E+REKL ++YK D + FG RT FGGG++TGFAL+YD+ + KKF
Sbjct: 27 DVLHPGLSSVNKTEIREKLAAMYKVTPDVVFAFGFRTNFGGGRSTGFALIYDTLDFAKKF 86
Query: 332 EPQYRLVRVGL--ATKAERASRQQRAYNQQKQKG 427
EP+YRL R GL K R R++R +K +G
Sbjct: 87 EPKYRLARHGLFEQKKQTRKQRKERRNRMKKVRG 120
>sp|P02377|RS24_XENLA 40S RIBOSOMAL PROTEIN S24 (S19)
pir||R3XL19 ribosomal protein S24 - African clawed frog
emb|CAA24704.1| (V01443) ribsomal protein S19 [Xenopus laevis]
Length = 132
Score = 95.9 bits (237), Expect = 3e-19
Identities = 46/91 (50%), Positives = 62/91 (67%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D+LHP +A + K E+REKL +YK D I VFG RT FGGGKTTGF ++YDS + KK
Sbjct: 26 DVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKN 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RL + GL K ++ SR+QR + + K
Sbjct: 86 EPKHRLAKHGLYEK-KKTSRKQRKERKNRMK 115
>pir||T32583 hypothetical protein T07A9.11 - Caenorhabditis elegans
gb|AAK39283.1| (AF036706) Contains similarity to Pfam domain: PF01282
(Ribosomal_S24e), Score=134.5, E-value=6e-37, N=1
[Caenorhabditis elegans]
Length = 327
Score = 93.6 bits (231), Expect = 2e-18
Identities = 43/91 (47%), Positives = 62/91 (67%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
+++HP R + K ++REK+ LYK D + FG ++ GGGK+ GFALVYD+ + KKF
Sbjct: 26 EVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIGGGKSKGFALVYDTIDFAKKF 85
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP+YRL +GLATK E+ R+QR + +QK
Sbjct: 86 EPKYRL--MGLATKVEKPGRKQRKERKNRQK 114
Score = 31.6 bits (70), Expect = 8.0
Identities = 17/64 (26%), Positives = 32/64 (49%)
Frame = +2
Query: 287 GFALVYDSPEAMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQKGLVWLTLDNRQAAQ 466
GF LVYD+ + K++P++ G +T SR++ +++ + T D +A +
Sbjct: 177 GFTLVYDTFDFANKYQPEHSSNHDGASTSRTSISRRKEKRRREQAPKVPEPTADEIEAKE 236
Query: 467 EPTK 478
E K
Sbjct: 237 EEYK 240
>emb|CAB64902.1| (AJ245654) 40S ribosomal protein S19 [Cyanophora paradoxa]
Length = 133
Score = 93.2 bits (230), Expect = 2e-18
Identities = 46/95 (48%), Positives = 64/95 (66%), Gaps = 1/95 (1%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQKD-QISVFGLRTQFGGGKTTGFALVYDSPE 316
+F D+LHP RAN+SK ELREKL +YK ++ V+G RT FGGGK+TGF L+YDS
Sbjct: 23 QFVIDVLHPGRANVSKNELREKLAKMYKVDDPARVLVYGFRTGFGGGKSTGFGLIYDSVA 82
Query: 317 AMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
KK E ++RLVR+G+ + + R+QR + + K
Sbjct: 83 FAKKTESKFRLVRIGMG-EGKAGGRKQRKERKNRMK 117
>gb|AAK16518.1|AF331158_1 (AF331158) ribosomal protein S24 [Trichinella spiralis]
Length = 136
Score = 90.1 bits (222), Expect = 2e-17
Identities = 43/91 (47%), Positives = 61/91 (66%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
D++HPN+ +SK L E L YK D + FG RT +GGG+++GFAL+YD+ + KKF
Sbjct: 29 DVIHPNKDGVSKATLCEMLAKSYKTTPDVVFCFGFRTCYGGGRSSGFALIYDALDYAKKF 88
Query: 332 EPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
EP++RLVR GL T+ ER R+QR + + K
Sbjct: 89 EPKHRLVRKGLLTR-ERTGRKQRKERKNRMK 118
>gb|AAF64318.1|AF252289_1 (AF252289) 40S ribosomal protein S24e [Leishmania amazonensis]
Length = 137
Score = 75.1 bits (183), Expect = 6e-13
Identities = 40/96 (41%), Positives = 61/96 (62%), Gaps = 4/96 (4%)
Frame = +2
Query: 140 RFYSDILHPNRAN-ISKEELREKLGSLYKA-QKDQISVFGLRTQFGGGKTTGFALVYDSP 313
+F ++ HP+ + + +R+KL LYK Q+S+FG +T+FGGGKTTGF L+YD
Sbjct: 27 QFIVEVNHPHWCGTVPTQLIRKKLAVLYKVPDASQVSLFGFKTKFGGGKTTGFGLIYDDL 86
Query: 314 EAMKKFEPQYRLVRVGL--ATKAERASRQQRAYNQQKQKG 427
++K+FEP YR R+G A R S ++R +K +G
Sbjct: 87 ASLKRFEPNYRKTRMGFGKARLPARKSVKERRNRNKKLRG 126
>ref|NP_113450.1| 40S ribosomal protein S24 [Guillardia theta]
emb|CAC27019.1| (AJ010592) 40S ribosomal protein S24 [Guillardia theta]
Length = 129
Score = 55.5 bits (132), Expect = 5e-07
Identities = 35/95 (36%), Positives = 52/95 (53%), Gaps = 1/95 (1%)
Frame = +2
Query: 140 RFYSDILHPNRANISKEELREKLGSLYKAQKDQ-ISVFGLRTQFGGGKTTGFALVYDSPE 316
+F I + NISKE LR +L Y+ + I +FGL+ FGG K + F +Y + E
Sbjct: 25 QFLLSIDRKKKFNISKEWLRIELSKYYRIKDPSLIFIFGLKNNFGGFKCSAFVYIYYNLE 84
Query: 317 AMKKFEPQYRLVRVGLATKAERASRQQRAYNQQKQK 424
A + EP++RL++ L K E S +QR + K K
Sbjct: 85 AARVNEPKHRLIKNNL-MKLELQSSKQRKEKKNKMK 119
>ref|NP_127362.1| SSU ribosomal protein S24E [Pyrococcus abyssi]
pir||B75019 ssu ribosomal protein s24e (rps24e) PAB3419 - Pyrococcus abyssi
(strain Orsay)
emb|CAB50592.1| (AJ248288) SSU ribosomal protein S24E (rps24E) [Pyrococcus abyssi]
Length = 99
Score = 46.6 bits (109), Expect = 2e-04
Identities = 23/78 (29%), Positives = 41/78 (52%)
Frame = +2
Query: 146 YSDILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMK 325
Y +I HP S+++++ KL ++ + + +R+ FG K+ G+A Y + M
Sbjct: 20 YFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKYYYDKDRML 79
Query: 326 KFEPQYRLVRVGLATKAE 379
EP+Y L+R G+ K E
Sbjct: 80 YIEPEYILIRDGIIEKKE 97
>sp|P19953|RS24_HALMA 30S RIBOSOMAL PROTEIN S24E (HS15) (E1.2)
pir||R3HS15 ribosomal protein S24.eR [validated] - Haloarcula marismortui
emb|CAA49707.1| (X70117) ribosomal protein HS15 [Haloarcula marismortui]
Length = 102
Score = 42.7 bits (99), Expect = 0.003
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +2
Query: 152 DILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKF 331
+++H + A S+ +R+ L + +++ + L T+FG KT G+A VYD+PE +
Sbjct: 22 EVVH-DEATPSRLSVRDSLAATLNKDAEEVVIHKLDTKFGMRKTVGYAKVYDNPEYARDV 80
Query: 332 EPQYRLVRVGLATKAERASRQ 394
E + L R + E + +
Sbjct: 81 EQDHMLERNKIVADGEEEAEE 101
>ref|NP_069943.1| SSU ribosomal protein S24E (rps24E) [Archaeoglobus fulgidus]
sp|O29151|RS24_ARCFU 30S RIBOSOMAL PROTEIN S24E
pir||A69389 SSU ribosomal protein S24E (rps24E) homolog - Archaeoglobus
fulgidus
gb|AAB90128.1| (AE001027) SSU ribosomal protein S24E (rps24E) [Archaeoglobus
fulgidus]
Length = 110
Score = 41.2 bits (95), Expect = 0.010
Identities = 19/72 (26%), Positives = 42/72 (57%)
Frame = +2
Query: 182 SKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVG 361
S++E+R K+ L A+ +++ V ++T+FG + + +YD+ E ++K E ++ + R
Sbjct: 34 SRKEVRGKIAGLMNAEPERVVVDYIKTEFGKTEAKCYVKIYDTVEDLQKIEEEHIIERNK 93
Query: 362 LATKAERASRQQ 397
+ +AE A +
Sbjct: 94 VEEQAEEAEEAE 105
>sp|O26367|RS24_METTH 30S RIBOSOMAL PROTEIN S24E
pir||F69133 ribosomal protein S24 - Methanobacterium thermoautotrophicum
(strain Delta H)
gb|AAB84773.1| (AE000812) ribosomal protein S24 [Methanothermobacter
thermautotrophicus]
Length = 100
Score = 38.5 bits (88), Expect = 0.066
Identities = 19/63 (30%), Positives = 37/63 (58%)
Frame = +2
Query: 191 ELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLAT 370
E++ KL ++ A KD + V + FG + TG+A +Y+S E + + EP++ + + A+
Sbjct: 35 EVKNKLVAMLDADKDLLVVDKIDQGFGEPRATGYAKIYESAEKLTEIEPEHVIKKNTEAS 94
Query: 371 KAE 379
+ E
Sbjct: 95 EEE 97
>ref|NP_111002.1| 30S ribosomal protein S24E [Thermoplasma volcanium]
dbj|BAB59624.1| (AP000992) ribosomal protein small subunit S24 [Thermoplasma
volcanium]
Length = 99
Score = 38.1 bits (87), Expect = 0.086
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 167 NRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYR 346
N S+EE++E + AQK+ I V + G + G+ +Y + +EP Y
Sbjct: 28 NARTPSREEIKEIIAKHEGAQKELIIVESNKQLTGKHEIVGYTKIYQDKASAMLYEPDYE 87
Query: 347 LVRVGLATK 373
L+R GL K
Sbjct: 88 LIRNGLKQK 96
>sp|Q9YCY0|RS24_AERPE 30S RIBOSOMAL PROTEIN S24E
Length = 102
Score = 38.1 bits (87), Expect = 0.086
Identities = 22/64 (34%), Positives = 32/64 (49%)
Frame = +2
Query: 194 LREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 373
LR+KL + +I + ++T +G G + VYDSPE FEP+Y + R G
Sbjct: 37 LRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVHVYDSPERALSFEPKYIIERNGGVNP 96
Query: 374 AERA 385
E A
Sbjct: 97 FEEA 100
>pir||E72714 probable ribosomal protein S24 APE1132 - Aeropyrum pernix (strain
K1)
dbj|BAA80117.1| (AP000060) 119aa long hypothetical 30S ribosomal protein S24
[Aeropyrum pernix]
Length = 119
Score = 38.1 bits (87), Expect = 0.086
Identities = 22/64 (34%), Positives = 32/64 (49%)
Frame = +2
Query: 194 LREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKFEPQYRLVRVGLATK 373
LR+KL + +I + ++T +G G + VYDSPE FEP+Y + R G
Sbjct: 54 LRQKLAEVLGVDIKRIYIRYIKTGYGAGLSKVRVHVYDSPERALSFEPKYIIERNGGVNP 113
Query: 374 AERA 385
E A
Sbjct: 114 FEEA 117
>gb|AAG20206.1| (AE005097) 30S ribosomal protein S24E; Rps24e [Halobacterium sp.
NRC-1]
Length = 102
Score = 36.6 bits (83), Expect = 0.25
Identities = 23/67 (34%), Positives = 35/67 (51%)
Frame = +2
Query: 155 ILHPNRANISKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVYDSPEAMKKFE 334
I+H + A S+ +R+ L + +++ V L T+FG KT G A VYDSP + E
Sbjct: 23 IVHDD-ATPSRLSVRDSLAAKLDKDSEEVVVHELDTKFGMRKTRGRAKVYDSPAQAAEVE 81
Query: 335 PQYRLVR 355
+ L R
Sbjct: 82 HDHMLER 88
>gb|AAA45882.1| (M14976) IB4WY-1 polypeptide [Human herpesvirus 4]
Length = 506
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 73 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 132
Query: 355 RWPRHQG 375
R R +G
Sbjct: 133 RGDRSEG 139
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 7 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 66
Query: 355 RWPRHQG 375
R R +G
Sbjct: 67 RGDRSEG 73
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 205 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 264
Query: 355 RWPRHQG 375
R R +G
Sbjct: 265 RGDRSEG 271
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 271 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 330
Query: 355 RWPRHQG 375
R R +G
Sbjct: 331 RGDRSEG 337
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 139 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 198
Query: 355 RWPRHQG 375
R R +G
Sbjct: 199 RGDRSEG 205
Score = 32.3 bits (72), Expect = 4.7
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 403 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 462
Query: 355 RWPR 366
PR
Sbjct: 463 LRPR 466
>gb|AAA45901.1| (M26282) protein T1 [Human herpesvirus 4]
Length = 261
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 92 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 151
Query: 355 RWPRHQG 375
R R +G
Sbjct: 152 RGDRSEG 158
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 26 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 85
Query: 355 RWPRHQG 375
R R +G
Sbjct: 86 RGDRSEG 92
Score = 32.3 bits (72), Expect = 4.7
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 158 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 217
Query: 355 RWPR 366
PR
Sbjct: 218 LRPR 221
>pir||S77938 EBNA-LP protein - human herpesvirus 4
gb|AAA45890.1| (K03489) leader protein (EBNA-LP) [Human herpesvirus 4]
Length = 308
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 7 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 66
Query: 355 RWPRHQG 375
R R +G
Sbjct: 67 RGDRSEG 73
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 139 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 198
Query: 355 RWPRHQG 375
R R +G
Sbjct: 199 RGDRSEG 205
Score = 35.0 bits (79), Expect = 0.73
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 73 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 132
Query: 355 RWPRHQG 375
R R +G
Sbjct: 133 RGDRSEG 139
Score = 32.3 bits (72), Expect = 4.7
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 205 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 264
Query: 355 RWPR 366
PR
Sbjct: 265 LRPR 268
>emb|CAC12220.1| (AL445066) ribosomal protein S24 related protein [Thermoplasma
acidophilum]
Length = 98
Score = 34.3 bits (77), Expect = 1.2
Identities = 21/64 (32%), Positives = 33/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 182 SKEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALVY-DSPEAMKKFEPQYRLVRV 358
S+EE++E + K+ + V + G + G+ +Y D P AM +EP Y L+R
Sbjct: 32 SREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKIYADKPSAML-YEPDYELIRN 90
Query: 359 GLATK 373
GL K
Sbjct: 91 GLKQK 95
>ref|XP_017442.1| similar to heterogeneous nuclear ribonucleoprotein A1 (H. sapiens)
[Homo sapiens]
gb|AAC83080.1| (AC004957) heterogeneous ribonuclear particle protein A1; similar
to P49312 (PID:g1350822) [Homo sapiens]
Length = 317
Score = 33.5 bits (75), Expect = 2.1
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Frame = +2
Query: 185 KEELREKLGSLYKAQKDQISVFGLRTQFGGGKTTGFALV-YDSPEAMKKFEPQ-YRLVRV 358
KE+ +E Y Q +I V + T G GK GFA V +D +++ K Q Y V
Sbjct: 113 KEDTKEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNG 172
Query: 359 GLATKAERASRQQRAYNQQKQKG 427
+ + S+Q+ A Q+G
Sbjct: 173 HICEVRKALSKQEMASTSSSQRG 195
>gb|AAA88328.1| (J03842) unknown protein [Neisseria gonorrhoeae]
Length = 215
Score = 33.1 bits (74), Expect = 2.8
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 706 PASASKSLYPMPKPAPTTRMDRSKWT 629
PA+A+K P PKP+PT ++KWT
Sbjct: 157 PATAAKRTKPKPKPSPTPPTAKAKWT 182
>gb|AAA66537.1| (M12553) unknown protein [Human herpesvirus 4]
Length = 110
Score = 32.3 bits (72), Expect = 4.7
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Frame = +1
Query: 187 GGAPREARFPLQGPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGA 354
G P P GPEGP +L RSP+P R Q+ R R L + EEV + P G
Sbjct: 7 GPGPTRPGPPGIGPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGP 66
Query: 355 RWPR 366
PR
Sbjct: 67 LRPR 70
>gb|AAB23798.1| nuclear antigen 5, EBNA 5 {alternatively spliced} [Epstein-Barr
virus, Daudi, Peptide, 89 aa]
Length = 89
Score = 31.6 bits (70), Expect = 8.0
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 223 GPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGARWPRHQ 372
GPEGP +L RSP+P R Q+ R R L + EEV + P G R R +
Sbjct: 19 GPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGPRGDRSE 72
>gb|AAB23799.1| nuclear antigen 5, EBNA 5 {alternatively spliced} [Epstein-Barr
virus, Daudi, Peptide, 110 aa]
Length = 110
Score = 31.6 bits (70), Expect = 8.0
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 223 GPEGPDLRL----RSPNPVRWWQDHRLRSRL*LPRGHEEVRASVPIGARWPRHQ 372
GPEGP +L RSP+P R Q+ R R L + EEV + P G R R +
Sbjct: 19 GPEGPLGQLLRRHRSPSPTRGGQEPRRVRRRVLVQQEEEVVSGSPSGPRGDRSE 72
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 304,803,825
Number of Sequences: 705144
Number of extensions: 5835836
Number of successful extensions: 17836
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 17012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17810
length of database: 222,175,239
effective HSP length: 117
effective length of database: 139,673,391
effective search space used: 23046109515
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)