Score E
Sequences producing significant alignments: (bits) Value
ref|NP_010326.1| protein of the small subunit of the mitoch... 134 7e-31
pir||T39945 ribosomal protein - fission yeast (Schizosaccha... 105 5e-22
gb|AAK23228.1| (AE005801) ribosomal protein S10 [Caulobacte... 54 2e-06
ref|NP_102119.1| 30S ribosomal protein S10 [Mesorhizobium l... 53 3e-06
sp|P80375|RS10_THETH 30S RIBOSOMAL PROTEIN S10 >gi|10835572... 53 4e-06
pdb|1I94|J Chain J, Crystal Structures Of The Small Ribosom... 52 5e-06
sp|P48850|RS10_RICPR 30S RIBOSOMAL PROTEIN S10 >gi|7440297|... 51 1e-05
sp|Q9XD37|RS10_LEPIN 30S RIBOSOMAL PROTEIN S10 >gi|5163203|... 51 1e-05
pir||F75533 ribosomal protein S10 - Deinococcus radiodurans... 48 9e-05
sp|O83218|RS10_TREPA 30S RIBOSOMAL PROTEIN S10 >gi|7440290|... 47 3e-04
sp|O84443|RS10_CHLTR 30S RIBOSOMAL PROTEIN S10 >gi|7440289|... 47 3e-04
sp|Q9Z803|RS10_CHLPN 30S RIBOSOMAL PROTEIN S10 >gi|7440306|... 46 3e-04
sp|P94266|RS10_BORBU 30S RIBOSOMAL PROTEIN S10 >gi|7440295|... 46 4e-04
sp|P56017|RS10_HELPY 30S RIBOSOMAL PROTEIN S10 >gi|7440294|... 45 6e-04
gb|AAG27263.1| (AF114845) putative S10 ribosomal protein [B... 45 6e-04
dbj|BAB58413.1| (AP003364) 30S ribosomal protein S10 [Staph... 45 6e-04
sp|P52857|RS10_TREHY 30S RIBOSOMAL PROTEIN S10 >gi|1256783|... 45 8e-04
sp|O52331|RS10_MYCGA 30S RIBOSOMAL PROTEIN S10 >gi|2766502|... 45 0.001
sp|P30765|RS10_MYCLE 30S RIBOSOMAL PROTEIN S10 >gi|418864|p... 44 0.001
sp|P48853|RS10_STRMU 30S RIBOSOMAL PROTEIN S10 >gi|467321|g... 44 0.001
sp|P95048|RS10_MYCTU 30S RIBOSOMAL PROTEIN S10 >gi|7440292|... 44 0.001
ref|NP_078064.1| ribosomal protein S10 [Ureaplasma urealyti... 44 0.001
pir||A69700 ribosomal protein S10 (rpsJ) - Bacillus subtili... 44 0.002
dbj|BAB43343.1| (AP003136) 30S ribosomal protein S10 [Staph... 44 0.002
sp|Q9Z9L5|RS10_BACHD 30S RIBOSOMAL PROTEIN S10 >gi|11276581... 44 0.002
emb|CAC13763.1| (AL445565) 30S RIBOSOMAL PROTEIN S10 [Mycop... 44 0.002
sp|O50185|RS10_MYCHY 30S RIBOSOMAL PROTEIN S10 >gi|2654766|... 44 0.002
gb|AAK33181.1| (AE006477) 30S ribosomal protein S10 [Strept... 44 0.002
ref|NP_044758.1| ribosomal protein S10 [Reclinomonas americ... 43 0.003
sp|P48852|RS10_SPIPL 30S RIBOSOMAL PROTEIN S10 >gi|480901|p... 43 0.004
emb|CAB82069.1| (AL161803) 30S ribosomal protein S10 [Strep... 43 0.004
sp|P74226|RS10_SYNY3 30S RIBOSOMAL PROTEIN S10 >gi|7440293|... 42 0.005
sp|Q9ZI51|RS10_AQUPY 30S RIBOSOMAL PROTEIN S10 >gi|4165864|... 42 0.008
ref|NP_043206.1| ribosomal protein S10 [Cyanophora paradoxa... 42 0.008
sp|P72232|RS10_PLARO 30S RIBOSOMAL PROTEIN S10 >gi|7440288|... 41 0.011
sp|P21471|RS10_BACSU 30S RIBOSOMAL PROTEIN S10 (BS13) >gi|1... 41 0.011
gb|AAK06198.1|AE006438_12 (AE006438) 30S ribosomal protein ... 41 0.014
pir||H81268 30S ribosomal protein S10 Cj1708c [imported] - ... 40 0.025
sp|P38518|RS10_THEMA 30S RIBOSOMAL PROTEIN S10 >gi|481928|p... 40 0.025
pir||G82059 ribosomal protein S10 VC2597 [imported] - Vibri... 40 0.025
sp|O66430|RS10_AQUAE 30S RIBOSOMAL PROTEIN S10 >gi|7440291|... 39 0.042
sp|P57592|RS10_BUCAI 30S RIBOSOMAL PROTEIN S10 >gi|10039184... 39 0.055
gb|AAK03500.1| (AE006177) RpS10 [Pasteurella multocida] 39 0.072
sp|P44378|RS10_HAEIN 30S RIBOSOMAL PROTEIN S10 >gi|1075260|... 39 0.072
pir||G82716 30S ribosomal protein S10 XF1151 [imported] - X... 38 0.12
sp|P10129|RS10_MYCCA 30S RIBOSOMAL PROTEIN S10 >gi|70928|pi... 37 0.16
ref|NP_053896.1| 30S ribosomal protein S10 [Porphyra purpur... 37 0.16
pir||E81234 30S ribosomal protein S10 NMB0140 [imported] - ... 37 0.16
ref|NP_072813.1| ribosomal protein S10 (rpS10) [Mycoplasma ... 37 0.21
sp|P02364|RS10_ECOLI 30S RIBOSOMAL PROTEIN S10 >gi|70926|pi... 37 0.21
pir||B83112 30S ribosomal protein S10 PA4264 [imported] - P... 37 0.21
sp|P48851|RS10_NEIGO 30S RIBOSOMAL PROTEIN S10 >gi|11276580... 37 0.27
gb|AAK25306.1| (AE005996) conserved hypothetical protein [C... 36 0.46
pir||T45363 ribosomal protein S10 [imported] - Mycobacteriu... 36 0.46
gb|AAG32323.1|AF287345_1 (AF287345) ribosomal protein S10 [... 36 0.46
ref|NP_050797.1| ribosomal protein S10 [Guillardia theta] >... 35 0.61
gb|AAD04120.1| (AF087347) ribosomal protein S10 [Chlamydia ... 35 0.61
ref|NP_109852.1| ribosomal protein S10 [Mycoplasma pneumoni... 35 0.79
dbj|BAB01403.1| (AP000375) contains similarity to 30S ribos... 35 1.0
sp|P25073|UL47_HSVE4 97 KD ALPHA TRANS-INDUCING PROTEIN (TE... 34 1.4
gb|AAF64190.1|AF245665_1 (AF245665) plastid ribosomal prote... 34 1.4
ref|NP_045230.1| 13 [Equine herpesvirus 4] >gi|11278224|pir... 34 1.4
ref|NP_045159.1| unknown; 30S ribosomal protein S10 [Cyanid... 34 1.8
gb|AAF22175.1|AF136381_1 (AF136381) c-Cbl-associated protei... 33 3.0
pir||B70570 hypothetical protein Rv3493c - Mycobacterium tu... 33 3.0
gb|AAF03189.1|AF110138_21 (AF110138) ribosomal protein S10 ... 33 3.9
pdb|1C8J|A Chain A, Crystal Structure Of Cytochrome P450cam... 32 5.1
ref|NP_035569.1| SRY-box containing gene 13 [Mus musculus] ... 32 5.1
gb|AAF45916.1| (AE003430) CG15375 gene product [Drosophila ... 32 5.1
pir||T15369 hypothetical protein C01F1.6 - Caenorhabditis e... 32 5.1
pir||JC6550 sex-determining region Y gene-related protein -... 32 5.1
gb|AAH07130.1|AAH07130 (BC007130) Similar to SRY-box contai... 32 5.1
pir||C81396 alanine--tRNA ligase (EC 6.1.1.7) Cj0506 [impor... 32 5.1
ref|NP_059091.1| regulatory factor (trans-acting) 5 [Mus mu... 32 5.1
gb|AAK15023.1| (AF235032) IgA1 protease [Neisseria meningit... 32 6.7
gb|AAD04944.1| (AF110314) herpesvirus immunoglobulin-like r... 32 6.7
gb|AAG16649.1| (AF196774) HVEC cell-cell adhesion molecule/... 32 6.7
ref|NP_076420.1| hypothetical protein MGC2474 [Homo sapiens... 32 8.8
gb|AAC18044.1| (AF039695) antigen NY-CO-25 [Homo sapiens] 32 8.8
ref|NP_006635.1| heat shock 105kD; heat shock 105kD beta; h... 32 8.8
ref|NP_041022.1| tegument protein [Equine herpesvirus 1] >g... 32 8.8
sp|Q92598|H105_HUMAN HEAT-SHOCK PROTEIN 105 KDA (HEAT SHOCK... 32 8.8
gb|AAF05592.1|AF188717_1 (AF188717) alanyl-tRNA synthetase ... 32 8.8
>ref|NP_010326.1| protein of the small subunit of the mitochondrial ribosome; Rsm10p
[Saccharomyces cerevisiae]
pir||S59279 hypothetical protein YDR041w - yeast (Saccharomyces cerevisiae)
emb|CAA90780.1| (Z54075) unknown [Saccharomyces cerevisiae]
Length = 203
Score = 134 bits (338), Expect = 7e-31
Identities = 75/176 (42%), Positives = 109/176 (61%), Gaps = 5/176 (2%)
Frame = -1
Query: 737 FPRSIQALHLKPLKREAEHGIPSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPL 558
+P +++A++ PLK ++G D+QLRS+ + L+F+SDF LR YYLG+P GP PL
Sbjct: 20 YPVNVEAVYYAPLKLPIKYGDLVADIQLRSYDNENLDFYSDFILRTGYYLGIPLTGPKPL 79
Query: 557 PRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQLWLAYLRKHQFYGVGMK 378
P ERWTV + F+ KS+ENFER T +RLI+ D NPE +Q+ +AY+ KH GVGMK
Sbjct: 80 PTRRERWTVIKSPFVHAKSKENFERHTHKRLIRAWDTNPEVLQMLIAYITKHSMAGVGMK 139
Query: 377 ANMWEFSELGEGKKMDALP-EAEKGEIDAKWS----HIGQTKTIGTMEKVEQILNQRRFR 213
N ++ SE+ DA E ID +S QT +G +KV ++L+ F+
Sbjct: 140 CNFFQRSEISLDLGSDANGLEKSLSNIDELYSLRNDDKAQTSAVG--QKVLELLDSPDFK 197
Query: 212 E 210
+
Sbjct: 198 K 198
>pir||T39945 ribosomal protein - fission yeast (Schizosaccharomyces pombe)
(fragment)
emb|CAA18879.1| (AL023287) ribosomal protein [Schizosaccharomyces pombe]
Length = 219
Score = 105 bits (262), Expect = 5e-22
Identities = 52/135 (38%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Frame = -1
Query: 740 RFPRSIQALHLKPLK-REAEHGIPSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPV 564
+ P ++ A++L P+K +E+ + L+++SF L+ F+DF R AYY+ +P GP
Sbjct: 40 QLPSNVAAVYLNPVKFNPSENDVLCASLKIKSFETPKLDTFTDFICRTAYYMKIPIKGPR 99
Query: 563 PLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQLWLAYLRKHQFYGVG 384
PLP E WT+ R FI K SQENFER T RLIQ+ NP T++ + +YLRK + +
Sbjct: 100 PLPNKVESWTLLRSPFIHKSSQENFERITHSRLIQLYSVNPVTLETFFSYLRKCNMWDLK 159
Query: 383 MKANMWEFSELGEGKK 336
++A +E+ + + K
Sbjct: 160 LQAKAYEYESIDDALK 175
>gb|AAK23228.1| (AE005801) ribosomal protein S10 [Caulobacter crescentus]
Length = 102
Score = 53.9 bits (128), Expect = 2e-06
Identities = 27/77 (35%), Positives = 46/77 (59%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + L+ + + A G GP+PLP + E++TV R + KKS+E FE
Sbjct: 8 IRLKAFDHRVLDHSTREIVNTAKRTGATVRGPIPLPTLIEKFTVNRSPHVDKKSREQFEI 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +R++ I D P+TV
Sbjct: 68 RTHKRVLDIVDPTPQTV 84
>ref|NP_102119.1| 30S ribosomal protein S10 [Mesorhizobium loti]
dbj|BAB47905.1| (AP002994) 30S ribosomal protein S10 [Mesorhizobium loti]
Length = 102
Score = 53.1 bits (126), Expect = 3e-06
Identities = 28/77 (36%), Positives = 45/77 (58%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + L+ + + A G GP+PLP E++TV R + KKS+E FE
Sbjct: 8 IRLKAFDHRVLDASTKEIVSTAKRTGANVRGPIPLPTRIEKFTVNRSPHVDKKSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RL+ I D P+TV
Sbjct: 68 RTHKRLLDIVDPTPQTV 84
>sp|P80375|RS10_THETH 30S RIBOSOMAL PROTEIN S10
pdb|1FJF|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1FJG|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1HR0|J Chain J, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|M Chain M, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|J Chain J, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
gb|AAA97863.1| (U36504) 30S ribosomal protein S10 [Thermus thermophilus]
emb|CAA86407.1| (Z46265) ribosomal protein s10 [Thermus thermophilus]
prf||2204237B ribosomal protein S10 [Thermus thermophilus]
Length = 105
Score = 52.8 bits (125), Expect = 4e-06
Identities = 29/83 (34%), Positives = 46/83 (54%)
Frame = -1
Query: 677 IPSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQ 498
+P ++LR F + L+ + + AA G GP+PLP R+TV R F K S+
Sbjct: 1 MPKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSR 60
Query: 497 ENFERKTLRRLIQIRDGNPETVQ 429
E+FE +T RL+ I + N +T++
Sbjct: 61 EHFELRTHNRLVDIINPNRKTIE 83
>pdb|1I94|J Chain J, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|J Chain J, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|J Chain J, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|J Chain J, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
Length = 104
Score = 52.4 bits (124), Expect = 5e-06
Identities = 29/82 (35%), Positives = 45/82 (54%)
Frame = -1
Query: 674 PSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQE 495
P ++LR F + L+ + + AA G GP+PLP R+TV R F K S+E
Sbjct: 1 PKIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRGPFKHKDSRE 60
Query: 494 NFERKTLRRLIQIRDGNPETVQ 429
+FE +T RL+ I + N +T++
Sbjct: 61 HFELRTHNRLVDIINPNRKTIE 82
>sp|P48850|RS10_RICPR 30S RIBOSOMAL PROTEIN S10
pir||B71672 ribosomal protein S10 - Rickettsia prowazekii
emb|CAA90882.1| (Z54170) ribosomal protein S10 [Rickettsia prowazekii]
emb|CAA15100.1| (AJ235272) 30S RIBOSOMAL PROTEIN S10 (rpsJ) [Rickettsia prowazekii]
Length = 105
Score = 50.8 bits (120), Expect = 1e-05
Identities = 29/77 (37%), Positives = 43/77 (55%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+SF + L+ + + A GP+PLPR ER+TV R + KKS+E FE
Sbjct: 7 IRLKSFDHRSLDQATKEIVSAVKRTFATINGPIPLPRKIERFTVNRSPHVHKKSREQFEI 66
Query: 482 KTLRRLIQIRDGNPETV 432
+ +RL+ I D NP V
Sbjct: 67 RKHKRLLVIDDPNPAVV 83
>sp|Q9XD37|RS10_LEPIN 30S RIBOSOMAL PROTEIN S10
gb|AAD40582.1|AF115283_1 (AF115283) ribosomal protein S10 [Leptospira interrogans]
Length = 102
Score = 50.8 bits (120), Expect = 1e-05
Identities = 29/78 (37%), Positives = 45/78 (57%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP E +TV R + KKS+E FE
Sbjct: 8 VKLKAFDHRLIDQSTYEIVATAKRTGATVSGPIPLPTKKEIYTVLRSPHVNKKSREQFEL 67
Query: 482 KTLRRLIQIRDGNPETVQ 429
KT +RLI I D N +TV+
Sbjct: 68 KTHKRLIDILDTNEDTVE 85
>pir||F75533 ribosomal protein S10 - Deinococcus radiodurans (strain R1)
gb|AAF09891.1|AE001892_2 (AE001892) ribosomal protein S10 [Deinococcus radiodurans]
Length = 107
Score = 48.1 bits (113), Expect = 9e-05
Identities = 27/81 (33%), Positives = 42/81 (51%)
Frame = -1
Query: 674 PSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQE 495
P ++LR F + L+ + + G GPVPLP R+TV R F +K S+E
Sbjct: 4 PKIRIKLRGFDHKALDQSASKIVDTVRRTGADVSGPVPLPTRIRRFTVLRSPFKYKDSRE 63
Query: 494 NFERKTLRRLIQIRDGNPETV 432
+FE +T RL+ I + +T+
Sbjct: 64 HFEIRTHNRLVDIMNPTKKTI 84
>sp|O83218|RS10_TREPA 30S RIBOSOMAL PROTEIN S10
pir||F71354 probable ribosomal protein S10 (rpsJ) - syphilis spirochete
gb|AAC65173.1| (AE001202) ribosomal protein S10 (rpsJ) [Treponema pallidum]
Length = 102
Score = 46.6 bits (109), Expect = 3e-04
Identities = 26/77 (33%), Positives = 42/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L F V+ ++ S + A G GP+PLP ++TV R + KKS+E FE
Sbjct: 8 VKLCGFDVELVDQSSRAIVHAVQKAGAEVLGPIPLPTRMHKFTVLRSPHVNKKSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + + E +
Sbjct: 68 RTHKRLIDIIEPSQEVM 84
>sp|O84443|RS10_CHLTR 30S RIBOSOMAL PROTEIN S10
pir||E71514 probable S10 ribosomal protein - Chlamydia trachomatis (serotype
D, strain UW3/Cx)
pir||F81672 ribosomal protein S10 TC0720 [imported] - Chlamydia muridarum
(strain Nigg)
gb|AAC68035.1| (AE001317) S10 Ribosomal Protein [Chlamydia trachomatis]
gb|AAF39531.1| (AE002340) ribosomal protein S10 [Chlamydia muridarum]
Length = 105
Score = 46.6 bits (109), Expect = 3e-04
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+ F L+ + + A G GP+PLP E +TV R + KKS+E FE
Sbjct: 10 IRLKGFDQGQLDQSTANIVETAKRTGARVVGPIPLPTKREVYTVLRSPHVDKKSREQFEI 69
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I D +T+
Sbjct: 70 RTHKRLIDILDPTGKTI 86
>sp|Q9Z803|RS10_CHLPN 30S RIBOSOMAL PROTEIN S10
pir||F72065 ribosomal protein S10 CP0203 [imported] - Chlamydophila pneumoniae
(strains CWL029 and AR39)
gb|AAD18689.1| (AE001639) S10 Ribosomal Protein [Chlamydophila pneumoniae CWL029]
gb|AAF38075.1| (AE002181) ribosomal protein S10 [Chlamydophila pneumoniae AR39]
dbj|BAA98755.1| (AP002547) S10 ribosomal protein [Chlamydophila pneumoniae J138]
Length = 105
Score = 46.2 bits (108), Expect = 3e-04
Identities = 26/77 (33%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+ F L+ + + A G GP+PLP E +TV R + KKS+E FE
Sbjct: 10 IRLKGFDQGQLDRSTADIVETAKRTGARVVGPIPLPTKREVYTVLRSPHVDKKSREQFEI 69
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RL+ I D +T+
Sbjct: 70 RTHKRLVDILDPTGKTI 86
>sp|P94266|RS10_BORBU 30S RIBOSOMAL PROTEIN S10
pir||D70159 ribosomal protein S10 (rpsJ) - Lyme disease spirochete
gb|AAB36821.1| (U78193) ribosomal protein S10 [Borrelia burgdorferi]
gb|AAC66865.1| (AE001152) ribosomal protein S10 (rpsJ) [Borrelia burgdorferi]
Length = 103
Score = 45.8 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 41/69 (59%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L SF V+ L+ ++ ++A GP+PLP +++TV R + KKS+E FE
Sbjct: 9 VRLFSFDVKILDQSAESIVKAVQKAKAQIKGPIPLPTKIKKYTVLRSPHVNKKSREQFEM 68
Query: 482 KTLRRLIQI 456
+T +RLI I
Sbjct: 69 RTHKRLIDI 77
>sp|P56017|RS10_HELPY 30S RIBOSOMAL PROTEIN S10
pir||H64684 ribosomal protein S10 - Helicobacter pylori
gb|AAD08359.1| (AE000633) ribosomal protein S10 (rps10) [Helicobacter pylori
26695]
gb|AAD06791.1| (AE001547) 30S RIBOSOMAL PROTEIN S10 [Helicobacter pylori J99]
Length = 104
Score = 45.4 bits (106), Expect = 6e-04
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
L+L+++ + L+ + A G GP+PLP +R+TV R + K S+E FE
Sbjct: 6 LKLKAYDHRVLDRSVVAIVEAVKRSGSEIRGPIPLPTKNKRYTVLRSPHVNKDSREQFEI 65
Query: 482 KTLRRLIQIRDGNPETV 432
+ RLI I PETV
Sbjct: 66 RVYSRLIDIISATPETV 82
>gb|AAG27263.1| (AF114845) putative S10 ribosomal protein [Brachyspira pilosicoli]
Length = 101
Score = 45.4 bits (106), Expect = 6e-04
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F ++ ++ + + + G GP+PLP + TV R + KS+E FE
Sbjct: 8 VKLKAFDIELIDQSAQSIVASVKKTGARVSGPIPLPTSIRKVTVIRSPHVNIKSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETVQ 429
+ +RLI I D P+T +
Sbjct: 68 RVYKRLIDIFDVTPQTTE 85
>dbj|BAB58413.1| (AP003364) 30S ribosomal protein S10 [Staphylococcus aureus subsp.
aureus Mu50]
Length = 102
Score = 45.4 bits (106), Expect = 6e-04
Identities = 23/77 (29%), Positives = 45/77 (57%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + ++ ++ + A G GP+PLP +T+ R ++K S+E FE+
Sbjct: 8 IRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHMYKDSREQFEQ 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + P+TV
Sbjct: 68 RTHKRLIDIVNPTPKTV 84
>sp|P52857|RS10_TREHY 30S RIBOSOMAL PROTEIN S10
gb|AAA96521.1| (U51635) ribosomal protein subunit S10 [Brachyspira hyodysenteriae]
Length = 101
Score = 45.1 bits (105), Expect = 8e-04
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F ++ ++ + + + G GP+PLP + TV R + KS+E FE
Sbjct: 8 VKLKAFDIELIDQSAQSIVASVKKTGARVSGPIPLPTSIRKVTVIRSPHVNIKSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETVQ 429
+ +RLI I D P+T +
Sbjct: 68 RIYKRLIDIFDVTPQTTE 85
>sp|O52331|RS10_MYCGA 30S RIBOSOMAL PROTEIN S10
gb|AAB95386.1| (AF036708) ribosomal protein S10 [Mycoplasma gallisepticum]
Length = 121
Score = 44.7 bits (104), Expect = 0.001
Identities = 22/48 (45%), Positives = 32/48 (65%)
Frame = -1
Query: 572 GPVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQ 429
GP+PLP E +T+ R + K S+E FER+T +RLI I++ ET+Q
Sbjct: 57 GPIPLPTKKEVFTIIRSPHVDKASREQFERRTHKRLIIIKNLKNETIQ 104
>sp|P30765|RS10_MYCLE 30S RIBOSOMAL PROTEIN S10
pir||S31153 ribosomal protein S10 - Mycobacterium leprae
emb|CAA78676.1| (Z14314) ribosomal protein S10 [Mycobacterium leprae]
emb|CAC30818.1| (AL583923) 30S ribosomal protein S10 [Mycobacterium leprae]
Length = 101
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + ++ + + G GPVPLP + V R +K S+E+FE
Sbjct: 8 IRLKAYDHEAIDASARKIVETVVRTGANVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I D P+TV
Sbjct: 68 RTHKRLIDILDPTPKTV 84
>sp|P48853|RS10_STRMU 30S RIBOSOMAL PROTEIN S10
gb|AAB46363.1| (L29637) S10 ribosomal protein [Streptococcus mutans]
Length = 102
Score = 44.3 bits (103), Expect = 0.001
Identities = 25/77 (32%), Positives = 42/77 (54%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ ++ + A G GPVPLP +TV R +K S+E FE
Sbjct: 8 IRLKAYEHRTLDTAAEKIVETATRTGASVAGPVPLPTERSLYTVIRATHKYKDSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + +TV
Sbjct: 68 RTHKRLIDIVNPTQKTV 84
>sp|P95048|RS10_MYCTU 30S RIBOSOMAL PROTEIN S10
pir||G70641 probable ribosomal protein S10 rpsJ - Mycobacterium tuberculosis
(strain H37RV)
emb|CAB06463.1| (Z84395) rpsJ [Mycobacterium tuberculosis]
emb|CAA73671.1| (Y13228) rpsX [Mycobacterium bovis BCG]
gb|AAK44958.1| (AE006966) ribosomal protein S10 [Mycobacterium tuberculosis
CDC1551]
Length = 101
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + ++ + + G GPVPLP + V R +K S+E+FE
Sbjct: 8 IRLKAYDHEAIDASARKIVETVVRTGASVVGPVPLPTEKNVYCVIRSPHKYKDSREHFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I D P+TV
Sbjct: 68 RTHKRLIDIIDPTPKTV 84
>ref|NP_078064.1| ribosomal protein S10 [Ureaplasma urealyticum]
pir||G82914 ribosomal protein S10 UU230 [imported] - Ureaplasma urealyticum
gb|AAF30639.1|AE002122_8 (AE002122) ribosomal protein S10 [Ureaplasma urealyticum]
Length = 101
Score = 44.3 bits (103), Expect = 0.001
Identities = 20/48 (41%), Positives = 32/48 (66%)
Frame = -1
Query: 572 GPVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQ 429
GP+PLP E +T+ R + K S+E FER+T +RLI + + P+T++
Sbjct: 37 GPIPLPTKKEIFTILRSPHVNKSSREQFERRTHKRLIILENPQPKTME 84
>pir||A69700 ribosomal protein S10 (rpsJ) - Bacillus subtilis
dbj|BAA11006.1| (D64127) ribosomal protein S10 [Bacillus subtilis]
emb|CAB11891.1| (Z99104) ribosomal protein S10 (BS13) [Bacillus subtilis]
Length = 102
Score = 43.9 bits (102), Expect = 0.002
Identities = 24/77 (31%), Positives = 43/77 (55%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ ++ + A G GP+PLP +T+ R +K S+E FE
Sbjct: 8 IRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILRAVHKYKDSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + P+TV
Sbjct: 68 RTHKRLIDIVNPTPQTV 84
>dbj|BAB43343.1| (AP003136) 30S ribosomal protein S10 [Staphylococcus aureus subsp.
aureus N315]
Length = 102
Score = 43.9 bits (102), Expect = 0.002
Identities = 23/77 (29%), Positives = 44/77 (56%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + ++ ++ + A G GP+PLP +T+ R +K S+E FE+
Sbjct: 8 IRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKDSREQFEQ 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + P+TV
Sbjct: 68 RTHKRLIDIVNPTPKTV 84
>sp|Q9Z9L5|RS10_BACHD 30S RIBOSOMAL PROTEIN S10
pir||T44382 ribosomal protein S10 [imported] - Bacillus halodurans
dbj|BAA75270.1| (AB017508) rpsJ homologue (identity of 98% to B. subtilis )
[Bacillus halodurans]
dbj|BAB03852.1| (AP001507) 30S ribosomal protein S10 [Bacillus halodurans]
Length = 102
Score = 43.9 bits (102), Expect = 0.002
Identities = 24/77 (31%), Positives = 43/77 (55%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ ++ + A G GP+PLP +T+ R +K S+E FE
Sbjct: 8 IRLKAYDHRVLDQSAEKIVETAKRSGANVSGPIPLPTEKSVYTILRAVHKYKDSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + P+TV
Sbjct: 68 RTHKRLIDIVNPTPQTV 84
>emb|CAC13763.1| (AL445565) 30S RIBOSOMAL PROTEIN S10 [Mycoplasma pulmonis]
Length = 103
Score = 43.9 bits (102), Expect = 0.002
Identities = 20/49 (40%), Positives = 31/49 (62%)
Frame = -1
Query: 572 GPVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQL 426
GP+PLP E +T+ R + KKS+E FER+T +R I + P+ V++
Sbjct: 38 GPIPLPTKREIFTILRSVHVNKKSREQFERRTYKRFIVFNNPGPKFVEI 86
>sp|O50185|RS10_MYCHY 30S RIBOSOMAL PROTEIN S10
gb|AAC32524.1| (AF012904) 30S ribosomal subunit protein S10 [Mycoplasma
hyopneumoniae]
Length = 123
Score = 43.5 bits (101), Expect = 0.002
Identities = 24/73 (32%), Positives = 41/73 (55%)
Frame = -1
Query: 671 SCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQEN 492
S ++L+SF + ++ + + A L + GPVPLP +T+ R I KKS+E
Sbjct: 22 SIKIKLKSFDHRQIDAAAKKIILLARELNIETRGPVPLPTSRAIYTILRSVHINKKSREQ 81
Query: 491 FERKTLRRLIQIR 453
FE +T +RL+ ++
Sbjct: 82 FESRTHKRLVILK 94
>gb|AAK33181.1| (AE006477) 30S ribosomal protein S10 [Streptococcus pyogenes M1
GAS]
Length = 102
Score = 43.5 bits (101), Expect = 0.002
Identities = 23/77 (29%), Positives = 42/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ ++ + A G GPVPLP +T+ R +K S+E FE
Sbjct: 8 IRLKAYEHRTLDTAAEKIVETATRTGATVAGPVPLPTERSLYTIIRATHKYKDSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RL+ I + +TV
Sbjct: 68 RTHKRLVDIINPTQKTV 84
>ref|NP_044758.1| ribosomal protein S10 [Reclinomonas americana]
pir||S78140 ribosomal protein S10 - Reclinomonas americana (ATCC 50394)
mitochondrion
gb|AAD11873.1| (AF007261) ribosomal protein S10 [Reclinomonas americana]
Length = 116
Score = 43.1 bits (100), Expect = 0.003
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Frame = -1
Query: 677 IPSCDLQLRSFSVQPLEFFSDFALRAAYYL-GLPAYGPVPLPRITERWTVPRDNFIFKKS 501
I C L L+SF + L+ L+ L L GP+ LP ++ TV R I KKS
Sbjct: 3 ITKCSLHLKSFDLDVLKDSCALILKNKINLQNLKLTGPINLPTKIKKITVLRSPHIDKKS 62
Query: 500 QENFERKTLRRLIQIRD--GNPETVQLWLAYLRKHQFYGVGMK 378
+E FE +T + IQI N + ++ F+G+ +K
Sbjct: 63 REQFEIRTYTKTIQIESLTKNTNDIINFMKQFENSFFFGLNIK 105
>sp|P48852|RS10_SPIPL 30S RIBOSOMAL PROTEIN S10
pir||S37489 ribosomal protein S10 - Spirulina platensis
emb|CAA79773.1| (Z21676) ribosomal protein S10 [Spirulina platensis]
Length = 105
Score = 42.7 bits (99), Expect = 0.004
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + L+ + + A G A GP+PLP + V R + K S+E+FE
Sbjct: 11 IRLKAFDRRLLDTSCEKIVDTANRTGATALGPIPLPTKRRIYCVLRSPHVDKDSREHFET 70
Query: 482 KTLRRLIQIRDGNPETV 432
+T RR+I I + +T+
Sbjct: 71 RTHRRIIDIYQPSSKTI 87
>emb|CAB82069.1| (AL161803) 30S ribosomal protein S10 [Streptomyces coelicolor
A3(2)]
Length = 102
Score = 42.7 bits (99), Expect = 0.004
Identities = 23/77 (29%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + ++ + + G GPVPLP + V + +K S+E+FE
Sbjct: 8 IRLKAYDHEVIDSSAKKIVETVTRTGASVAGPVPLPTEKNVYCVIKSPHKYKDSREHFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I D P+TV
Sbjct: 68 RTHKRLIDILDPTPKTV 84
>sp|P74226|RS10_SYNY3 30S RIBOSOMAL PROTEIN S10
pir||S75861 ribosomal protein S10 - Synechocystis sp. (strain PCC 6803)
dbj|BAA18320.1| (D90913) 30S ribosomal protein S10 [Synechocystis sp.]
Length = 105
Score = 42.4 bits (98), Expect = 0.005
Identities = 24/77 (31%), Positives = 42/77 (54%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + L+ D + A A GP+PLP + + V R + K S+E+FE
Sbjct: 11 IRLKAFDRRLLDTSCDKIVDTANRTNAAAVGPIPLPTKRKIYCVLRSPHVDKDSREHFET 70
Query: 482 KTLRRLIQIRDGNPETV 432
+T RR+I I + +T+
Sbjct: 71 RTHRRIIDIYQPSSKTI 87
>sp|Q9ZI51|RS10_AQUPY 30S RIBOSOMAL PROTEIN S10
gb|AAD08784.1| (AF040100) ribosomal protein S10 [Aquifex pyrophilus]
Length = 104
Score = 41.6 bits (96), Expect = 0.008
Identities = 22/78 (28%), Positives = 39/78 (49%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + L+ + G GP+PLP +W V R F +S+E+FE
Sbjct: 8 IKLKAFDHRVLDQSVKQIIETVKRTGGVVRGPIPLPTRKRKWCVLRSPHKFDQSREHFEI 67
Query: 482 KTLRRLIQIRDGNPETVQ 429
+ R+I I P+T++
Sbjct: 68 RAFSRIIDITRFTPQTIE 85
>ref|NP_043206.1| ribosomal protein S10 [Cyanophora paradoxa]
sp|P17009|RR10_CYAPA CYANELLE 30S RIBOSOMAL PROTEIN S10
pir||R3KT10 ribosomal protein S10 - Cyanophora paradoxa cyanelle
emb|CAA36388.1| (X52143) ribosomal protein S10 (AA 1-105) [Cyanophora paradoxa]
gb|AAA31700.1| (M35206) ribosomal protein S10 (rps10; rpsJ) [Cyanophora paradoxa]
gb|AAA81237.1| (U30821) ribosomal protein S10 [Cyanophora paradoxa]
Length = 105
Score = 41.6 bits (96), Expect = 0.008
Identities = 25/77 (32%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
+QLRS+ LE + + AA A GP+PLP + + V R + K S+E+FE
Sbjct: 11 IQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREHFEI 70
Query: 482 KTLRRLIQIRDGNPETV 432
+ RR+I + + +T+
Sbjct: 71 RVHRRIIDLYLPSSKTI 87
>sp|P72232|RS10_PLARO 30S RIBOSOMAL PROTEIN S10
pir||S72629 probable ribosomal protein S10 - Planobispora rosea
emb|CAA67346.1| (X98830) ribosomal protein S10 [Planobispora rosea]
Length = 102
Score = 41.2 bits (95), Expect = 0.011
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + ++ + + G GPVPLP + V R K S+E+FE
Sbjct: 8 IRLKAYDHEVIDSSAKKIVETVTRTGAKVAGPVPLPTEKNVYCVIRSPHNDKDSREHFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I D P+TV
Sbjct: 68 RTHKRLIDIIDPTPKTV 84
>sp|P21471|RS10_BACSU 30S RIBOSOMAL PROTEIN S10 (BS13)
gb|AAC45955.1| (U43929) S10 [Bacillus subtilis]
Length = 102
Score = 41.2 bits (95), Expect = 0.011
Identities = 23/77 (29%), Positives = 42/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ ++ + A G GP+PLP +T+ +K S+E FE
Sbjct: 8 IRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSVYTILLAVHKYKDSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + P+TV
Sbjct: 68 RTHKRLIDIVNPTPQTV 84
>gb|AAK06198.1|AE006438_12 (AE006438) 30S ribosomal protein S10 [Lactococcus lactis subsp.
lactis]
Length = 102
Score = 40.8 bits (94), Expect = 0.014
Identities = 23/77 (29%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ ++ + A GP+PLP +TV R +K S+E FE
Sbjct: 8 IRLKAYEHRILDAAAEKIVETAKRTNAEVSGPIPLPTDRSVYTVIRATHKYKDSREQFEM 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + +TV
Sbjct: 68 RTHKRLIDIIEPTQKTV 84
>pir||H81268 30S ribosomal protein S10 Cj1708c [imported] - Campylobacter jejuni
(strain NCTC 11168)
emb|CAB73694.1| (AL139079) 30S ribosomal protein S10 [Campylobacter jejuni]
Length = 103
Score = 40.0 bits (92), Expect = 0.025
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
L+L+++ + L+ + A G GP+P+P +R+TV + I K S+E FE
Sbjct: 6 LKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKIKRYTVLKSPHINKDSREQFEI 65
Query: 482 KTLRRLIQIRDGNPETV 432
+ R++ I P+TV
Sbjct: 66 RIHARMLDIVAATPDTV 82
>sp|P38518|RS10_THEMA 30S RIBOSOMAL PROTEIN S10
pir||S40187 ribosomal protein S10 - Thermotoga maritima (strain MSB8)
emb|CAA79776.1| (Z21677) ribosomal protein S10 [Thermotoga maritima]
gb|AAD36567.1|AE001798_32 (AE001798) ribosomal protein S10 [Thermotoga maritima]
Length = 102
Score = 40.0 bits (92), Expect = 0.025
Identities = 22/77 (28%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ + L+ + + A GP+PLP + V R K S+E+FE+
Sbjct: 8 IKLKAYDHELLDESAKKIVEVAKSTNSKVSGPIPLPTERTLYCVLRSPMKHKDSREHFEK 67
Query: 482 KTLRRLIQIRDGNPETV 432
+ +RLI I D +P+T+
Sbjct: 68 RVHKRLIDIIDPSPKTI 84
>pir||G82059 ribosomal protein S10 VC2597 [imported] - Vibrio cholerae (group
O1 strain N16961)
gb|AAF95738.1| (AE004326) ribosomal protein S10 [Vibrio cholerae]
Length = 103
Score = 40.0 bits (92), Expect = 0.025
Identities = 22/77 (28%), Positives = 42/77 (53%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER+TV + K +++ +E
Sbjct: 8 IRLKAFDYKLIDASTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEI 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + +TV
Sbjct: 68 RTHKRLIDIVEPTDKTV 84
>sp|O66430|RS10_AQUAE 30S RIBOSOMAL PROTEIN S10
pir||C70300 ribosomal protein S10 - Aquifex aeolicus
gb|AAC06399.1| (AE000669) ribosomal protein S10 [Aquifex aeolicus]
Length = 104
Score = 39.3 bits (90), Expect = 0.042
Identities = 17/48 (35%), Positives = 28/48 (57%)
Frame = -1
Query: 572 GPVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQ 429
GP+PLP +W V R F +S+E+FE + R++ I P+T++
Sbjct: 38 GPIPLPTRKRKWCVLRSPHKFDQSREHFEIREFSRILDIIRFTPQTIE 85
>sp|P57592|RS10_BUCAI 30S RIBOSOMAL PROTEIN S10
dbj|BAB13218.1| (AP001119) 30S ribosomal protein S10 [Buchnera sp. APS]
Length = 103
Score = 38.9 bits (89), Expect = 0.055
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER+T+ + K +++ +E
Sbjct: 8 IRLKAFDHRLIDQSTTEIVETAKRTGAQVRGPIPLPTRKERFTILVSPHVNKDARDQYEI 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I + +TV
Sbjct: 68 RTHKRLIDIVEPTEKTV 84
>gb|AAK03500.1| (AE006177) RpS10 [Pasteurella multocida]
Length = 103
Score = 38.5 bits (88), Expect = 0.072
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER+TV + K +++ +E
Sbjct: 8 IRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEI 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RL+ I + +TV
Sbjct: 68 RTHKRLVDIVEPTEKTV 84
>sp|P44378|RS10_HAEIN 30S RIBOSOMAL PROTEIN S10
pir||D64092 ribosomal protein S10 - Haemophilus influenzae (strain Rd KW20)
gb|AAC22435.1| (U32761) ribosomal protein S10 (rpS10) [Haemophilus influenzae Rd]
Length = 118
Score = 38.5 bits (88), Expect = 0.072
Identities = 21/77 (27%), Positives = 42/77 (54%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER+TV + K +++ +E
Sbjct: 23 IRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEI 82
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RL+ I + +TV
Sbjct: 83 RTHKRLVDIVEPTEKTV 99
>pir||G82716 30S ribosomal protein S10 XF1151 [imported] - Xylella fastidiosa
(strain 9a5c)
gb|AAF83961.1|AE003950_11 (AE003950) 30S ribosomal protein S10 [Xylella fastidiosa 9a5c]
Length = 103
Score = 37.7 bits (86), Expect = 0.12
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER T+ K +++ +E
Sbjct: 8 IRLKAFDCRLIDRSAGEIVETAKRTGAHVRGPIPLPTKIERCTILVSPHADKDARDQYET 67
Query: 482 KTLRRLIQIRDGNPETV 432
T +R++ I D N +TV
Sbjct: 68 CTYKRVLYIVDPNDKTV 84
>sp|P10129|RS10_MYCCA 30S RIBOSOMAL PROTEIN S10
pir||R3YM10 ribosomal protein S10 - Mycoplasma capricolum
emb|CAA29703.1| (X06414) ribosomal protein S10 (AA 1-102) [Mycoplasma capricolum]
Length = 102
Score = 37.4 bits (85), Expect = 0.16
Identities = 20/61 (32%), Positives = 34/61 (54%)
Frame = -1
Query: 608 LRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQ 429
++AA G GP+PLP + T+ R +K S+E FE +T +RL++I + T+
Sbjct: 26 IQAAEGTGAKVRGPIPLPTEKQVITILRAVHKYKDSREQFEMRTHKRLLEILNPTAATMD 85
Query: 428 L 426
+
Sbjct: 86 V 86
>ref|NP_053896.1| 30S ribosomal protein S10 [Porphyra purpurea]
sp|P51286|RR10_PORPU CHLOROPLAST 30S RIBOSOMAL PROTEIN S10
pir||S73207 ribosomal protein S10, chloroplast - red alga (Porphyra purpurea)
chloroplast
gb|AAC08172.1| (U38804) 30S ribosomal protein S10 [Porphyra purpurea]
Length = 105
Score = 37.4 bits (85), Expect = 0.16
Identities = 22/81 (27%), Positives = 40/81 (49%)
Frame = -1
Query: 674 PSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQE 495
P ++L++++ L + A A GP+PLP + V R + K S+E
Sbjct: 7 PKIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLRSPHVDKDSRE 66
Query: 494 NFERKTLRRLIQIRDGNPETV 432
+FE ++ RR+I I + +T+
Sbjct: 67 HFEIRSHRRIIDIHQPSSQTI 87
>pir||E81234 30S ribosomal protein S10 NMB0140 [imported] - Neisseria
meningitidis (group B strain MD58, group A strain Z2491)
gb|AAF40599.1| (AE002372) 30S ribosomal protein S10 [Neisseria meningitidis MC58]
emb|CAB83448.1| (AL162752) 30S ribosomal protein S10 [Neisseria meningitidis Z2491]
Length = 103
Score = 37.4 bits (85), Expect = 0.16
Identities = 21/76 (27%), Positives = 38/76 (49%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ ++ + + A G GP+PLP ER+ + R + K S+E E
Sbjct: 8 IRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPTKIERFNILRSPHVNKTSREQLEI 67
Query: 482 KTLRRLIQIRDGNPET 435
+T RL+ I D +T
Sbjct: 68 RTHLRLMDIVDWTDKT 83
>ref|NP_072813.1| ribosomal protein S10 (rpS10) [Mycoplasma genitalium]
sp|P47396|RS10_MYCGE 30S RIBOSOMAL PROTEIN S10
pir||F64216 ribosomal protein S10 - Mycoplasma genitalium
gb|AAC71368.1| (U39696) ribosomal protein S10 (rpS10) [Mycoplasma genitalium]
Length = 106
Score = 37.0 bits (84), Expect = 0.21
Identities = 22/77 (28%), Positives = 37/77 (47%)
Frame = -1
Query: 674 PSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQE 495
P ++L S+ L+ + + + GP+PLP E T+ R + K S+E
Sbjct: 8 PELKIKLESYDSTLLDLTIKKIVEVVKGVNIKIKGPLPLPTKKEVITIIRSPHVDKASRE 67
Query: 494 NFERKTLRRLIQIRDGN 444
FE+ T +RL+ + D N
Sbjct: 68 QFEKNTHKRLMILVDVN 84
>sp|P02364|RS10_ECOLI 30S RIBOSOMAL PROTEIN S10
pir||R3EC10 ribosomal protein S10 [validated] - Escherichia coli
emb|CAA26459.1| (X02613) ribosomal protein S10 (rpsJ) (aa 1-103) [Escherichia coli]
emb|CAA23633.1| (V00344) ribosomal protein S10 [Escherichia coli]
gb|AAA58118.1| (U18997) 30S ribosomal subunit protein S10 [Escherichia coli]
gb|AAC76346.1| (AE000408) 30S ribosomal subunit protein S10 [Escherichia coli K12]
gb|AAG58442.1|AE005557_11 (AE005557) 30S ribosomal subunit protein S10 [Escherichia coli
O157:H7 EDL933]
dbj|BAB37609.1| (AP002564) 30S ribosomal subunit protein S10 [Escherichia coli
O157:H7]
prf||2111328B NusE protein [Escherichia coli]
Length = 103
Score = 37.0 bits (84), Expect = 0.21
Identities = 21/77 (27%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER+TV + K +++ +E
Sbjct: 8 IRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEI 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T RL+ I + +TV
Sbjct: 68 RTHLRLVDIVEPTEKTV 84
>pir||B83112 30S ribosomal protein S10 PA4264 [imported] - Pseudomonas
aeruginosa (strain PAO1)
gb|AAG07652.1|AE004842_1 (AE004842) 30S ribosomal protein S10 [Pseudomonas aeruginosa]
Length = 103
Score = 37.0 bits (84), Expect = 0.21
Identities = 20/77 (25%), Positives = 41/77 (52%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L++F + ++ + + A G GP+PLP ER+TV + K +++ +E
Sbjct: 8 IRLKAFDHRLIDQSTQEIVETAKRTGAQVRGPIPLPTRKERFTVLISPHVNKDARDQYEI 67
Query: 482 KTLRRLIQIRDGNPETV 432
+T +R++ I +TV
Sbjct: 68 RTHKRVLDIVQPTDKTV 84
>sp|P48851|RS10_NEIGO 30S RIBOSOMAL PROTEIN S10
pir||T10169 ribosomal protein S10 - Neisseria gonorrhoeae
gb|AAB41518.1| (L36380) RpsJ [Neisseria gonorrhoeae]
Length = 103
Score = 36.6 bits (83), Expect = 0.27
Identities = 21/76 (27%), Positives = 38/76 (49%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L+++ ++ + + A G GP+PLP ER+ + R + K S+E E
Sbjct: 8 IRLKAYDYALIDRSAQEIVETAKRTGAVVKGPIPLPTKIERFNILRSPHMNKTSREQLEI 67
Query: 482 KTLRRLIQIRDGNPET 435
+T RL+ I D +T
Sbjct: 68 RTHLRLMDIVDWTDKT 83
>gb|AAK25306.1| (AE005996) conserved hypothetical protein [Caulobacter crescentus]
Length = 281
Score = 35.8 bits (81), Expect = 0.46
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 361 LASWARVRRWMLYQRQRRARSTPSGHISDRPRP 263
+ WA+VR W + R +TP GH D+P P
Sbjct: 244 IVEWAKVRSWSVIDRAPAPAATPQGHEGDKPMP 276
>pir||T45363 ribosomal protein S10 [imported] - Mycobacterium leprae (fragment)
emb|CAB11434.1| (Z98756) ribosomal protein S10 [Mycobacterium leprae]
Length = 61
Score = 35.8 bits (81), Expect = 0.46
Identities = 19/44 (43%), Positives = 26/44 (58%)
Frame = -1
Query: 563 PLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETV 432
PLP + V R +K S+E+FE +T +RLI I D P+TV
Sbjct: 1 PLPTEKNVYCVIRSPHKYKDSREHFEMRTHKRLIDILDPTPKTV 44
>gb|AAG32323.1|AF287345_1 (AF287345) ribosomal protein S10 [Fuchsia hybrid cultivar Qiu
94208]
Length = 133
Score = 35.8 bits (81), Expect = 0.46
Identities = 23/86 (26%), Positives = 46/86 (52%), Gaps = 1/86 (1%)
Frame = -1
Query: 596 YYLGLPAYG-PVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQLWL 420
+++G+P + V LP+ +TV R I KKS+E FE + + + I+ E +
Sbjct: 32 HFMGIPPHTRKVGLPQSRVLYTVLRSPHIDKKSREQFEMRIKKLYLVIKTDRHELRNKFF 91
Query: 419 AYLRKHQFYGVGMKANMWEFSELGEGK 339
+L++H+ +G + N+ + L +G+
Sbjct: 92 -WLKRHRIFGAQFEVNISCKTRLDKGR 117
>ref|NP_050797.1| ribosomal protein S10 [Guillardia theta]
sp|P19460|RR10_GUITH CHLOROPLAST 30S RIBOSOMAL PROTEIN S10
gb|AAC35731.1| (AF041468) ribosomal protein S10 [Guillardia theta]
Length = 102
Score = 35.4 bits (80), Expect = 0.61
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = -1
Query: 572 GPVPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETV 432
GP+PLP + + V R + K S+E+FE + +R+I I + N T+
Sbjct: 38 GPIPLPTRRKIYCVLRSPHVNKDSREHFETRIHKRVIDIYEPNSTTI 84
>gb|AAD04120.1| (AF087347) ribosomal protein S10 [Chlamydia trachomatis]
Length = 73
Score = 35.4 bits (80), Expect = 0.61
Identities = 20/59 (33%), Positives = 30/59 (49%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFE 486
++L+ F L+ + + A G GP+PLP E +TV R + KKS+E FE
Sbjct: 3 IRLKGFDQGQLDQSTANIVETAKRTGARVVGPIPLPTKREVYTVLRSPHVDKKSREQFE 61
>ref|NP_109852.1| ribosomal protein S10 [Mycoplasma pneumoniae]
sp|P75581|RS10_MYCPN 30S RIBOSOMAL PROTEIN S10
pir||S73993 ribosomal protein S10 - Mycoplasma pneumoniae (strain ATCC 29342)
gb|AAB96315.1| (AE000061) ribosomal protein S10 [Mycoplasma pneumoniae]
Length = 108
Score = 35.0 bits (79), Expect = 0.79
Identities = 21/77 (27%), Positives = 37/77 (47%)
Frame = -1
Query: 674 PSCDLQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQE 495
P ++L S+ L+ + + + + GP+PLP E T+ R + K S+E
Sbjct: 10 PELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVITIIRSPHVDKASRE 69
Query: 494 NFERKTLRRLIQIRDGN 444
FE+ +RL+ + D N
Sbjct: 70 QFEKNRHKRLMILVDVN 86
>dbj|BAB01403.1| (AP000375) contains similarity to 30S ribosomal protein
S10~gene_id:MJG19.7 [Arabidopsis thaliana]
gb|AAK60293.1|AF385700_1 (AF385700) AT3g13120/MJG19_6 [Arabidopsis thaliana]
Length = 191
Score = 34.7 bits (78), Expect = 1.0
Identities = 23/77 (29%), Positives = 38/77 (48%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++LRS+ V +E L AA GPVPLP + V + + K ++ +FE
Sbjct: 97 IKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEI 156
Query: 482 KTLRRLIQIRDGNPETV 432
+T +R+I I +T+
Sbjct: 157 RTHQRMIDILYPTAQTI 173
>sp|P25073|UL47_HSVE4 97 KD ALPHA TRANS-INDUCING PROTEIN (TEGUMENT PROTEIN) (GP10)
pir||TNBEEH 97K alpha trans-inducing protein - equine herpesvirus 4 (strain
MD)
emb|CAA35672.1| (X17684) B6 [Equine herpesvirus 4]
Length = 872
Score = 34.3 bits (77), Expect = 1.4
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +1
Query: 1 GPPLRVXXXXXXTKPKPYMAYCTTQDRYSMPLISSKDGYSSRITSI 138
G P+R T+ P+ A TQ YS P +S +DG S R +S+
Sbjct: 10 GAPIRRPRRSIETRSHPFRAAGNTQRTYSTPRLSYRDGLSGRASSL 55
>gb|AAF64190.1|AF245665_1 (AF245665) plastid ribosomal protein S10 precursor
[Mesembryanthemum crystallinum]
Length = 197
Score = 34.3 bits (77), Expect = 1.4
Identities = 23/77 (29%), Positives = 38/77 (48%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++LRS+ V +E + AA GPVPLP + V + + K ++ +FE
Sbjct: 103 IKLRSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEI 162
Query: 482 KTLRRLIQIRDGNPETV 432
+T +RLI I +T+
Sbjct: 163 RTHQRLIDILYPTAQTI 179
>ref|NP_045230.1| 13 [Equine herpesvirus 4]
pir||T42556 tegument protein 13 - equine herpesvirus 4 (strain NS80567)
gb|AAC59527.1| (AF030027) 13 [Equine herpesvirus 4]
Length = 864
Score = 34.3 bits (77), Expect = 1.4
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = +1
Query: 1 GPPLRVXXXXXXTKPKPYMAYCTTQDRYSMPLISSKDGYSSRITSI 138
G P+R T+ P+ A TQ YS P +S +DG S R +S+
Sbjct: 10 GAPIRRPRRSIETRSHPFRAAGNTQRTYSTPRLSYRDGLSGRASSL 55
>ref|NP_045159.1| unknown; 30S ribosomal protein S10 [Cyanidium caldarium]
gb|AAF12935.1|AF022186_57 (AF022186) unknown; 30S ribosomal protein S10 [Cyanidium caldarium]
Length = 109
Score = 33.9 bits (76), Expect = 1.8
Identities = 22/79 (27%), Positives = 39/79 (48%)
Frame = -1
Query: 662 LQLRSFSVQPLEFFSDFALRAAYYLGLPAYGPVPLPRITERWTVPRDNFIFKKSQENFER 483
++L S+S L + L++ GPV LP + V R + K S+E+FE
Sbjct: 15 IKLSSYSASLLNLSCNNVLQSIKESNTSVKGPVFLPTRRRVYCVLRSPHVNKDSREHFEI 74
Query: 482 KTLRRLIQIRDGNPETVQL 426
++ R+I I + ET+++
Sbjct: 75 RSHFRIIDISSCSSETIEM 93
>gb|AAF22175.1|AF136381_1 (AF136381) c-Cbl-associated protein SH3P12 [Homo sapiens]
Length = 1004
Score = 33.1 bits (74), Expect = 3.0
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = -1
Query: 818 RTQASLAKPGDLVPNKPEPSKNEQEPRFPRSIQALHLKPLKREAEHGIPSCDLQLRSFSV 639
+T S + P LVP PE + EP P ++ + PL E + D Q S
Sbjct: 227 QTPPSFSPPPPLVPPAPEDLRRVSEPDLPGAVSSTDSSPLLNEVSSSLIGTDSQAFSSEC 286
Query: 638 QP 633
+P
Sbjct: 287 KP 288
>pir||B70570 hypothetical protein Rv3493c - Mycobacterium tuberculosis (strain
H37RV)
emb|CAB08738.1| (Z95390) hypothetical protein Rv3493c [Mycobacterium tuberculosis]
gb|AAK47956.1| (AE007162) hypothetical protein [Mycobacterium tuberculosis
CDC1551]
Length = 242
Score = 33.1 bits (74), Expect = 3.0
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 10/76 (13%)
Frame = -3
Query: 819 SNTGLIG*ARRSCTEQARA*QERTRTPVSSIHSGPAPEASKARGRTR---------HPLM 667
++TG+ G ++S T +AR R P S PA A+ R R P +
Sbjct: 3 ADTGVAG-GQQSTTRRARRKASRPAGPAEGESSRPAQGAATVRAAARTESKPAKAAKPAL 61
Query: 666 RPPAPILQRPTSRILLRFCS-KSGLL 592
RP P +RP R+L+ + S +GLL
Sbjct: 62 RPVKPPPRRPAHRVLVGWLSLAAGLL 87
>gb|AAF03189.1|AF110138_21 (AF110138) ribosomal protein S10 [Nephroselmis olivacea]
Length = 120
Score = 32.7 bits (73), Expect = 3.9
Identities = 21/69 (30%), Positives = 38/69 (54%)
Frame = -1
Query: 566 VPLPRITERWTVPRDNFIFKKSQENFERKTLRRLIQIRDGNPETVQLWLAYLRKHQFYGV 387
V LP + +T+ + + KKS+E F+R T+R I I+ G+P +L L++ + GV
Sbjct: 48 VRLPNNYQSFTILKSPHVHKKSREQFQRTTMRVSIYIK-GSPSFWIYFLPRLKQLKLRGV 106
Query: 386 GMKANMWEF 360
+ W++
Sbjct: 107 QLS---WKY 112
>pdb|1C8J|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant (F87wY96F)
pdb|1C8J|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant (F87wY96F)
Length = 414
Score = 32.3 bits (72), Expect = 5.1
Identities = 32/131 (24%), Positives = 58/131 (43%), Gaps = 8/131 (6%)
Frame = -1
Query: 887 GKMMRQSIRPLRAFSSEVSWIARRTQASLAKPGDLVPNKPEPSKNEQEPRFPRSIQALHL 708
G+++R++ R FSSE WI R + D +P +P + Q + +
Sbjct: 68 GQLIREAYEDYRHFSSECPWIPREAGEAF----DFIPTSMDPPEQRQFRALANQVVGM-- 121
Query: 707 KPLKREAEHGIPSCDLQLRSFSVQPL-------EFFSDFALRAAYYL-GLPAYGPVPLPR 552
P+ + E+ I L S++P ++ F +R L GLP L
Sbjct: 122 -PVVDKLENRIQELACSLIE-SLRPQGQCNFTEDYAEPFPIRIFMLLAGLPEEDIPHLKY 179
Query: 551 ITERWTVPRDNFIFKKSQE 495
+T++ T P + F +++E
Sbjct: 180 LTDQMTRPDGSMTFAEAKE 198
>ref|NP_035569.1| SRY-box containing gene 13 [Mus musculus]
sp|Q04891|SX13_MOUSE SOX-13 PROTEIN
emb|CAA04278.1| (AJ000740) HMG-box transcription factor [Mus musculus]
Length = 984
Score = 32.3 bits (72), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 741 PVSSIHSGPAPEASKARGRTRHPLMRPPAPI 649
P+ +HS PAP ++ HPL PP P+
Sbjct: 236 PLQLLHSPPAPVVKRSGVAAHHPLQEPPQPL 266
>gb|AAF45916.1| (AE003430) CG15375 gene product [Drosophila melanogaster]
Length = 270
Score = 32.3 bits (72), Expect = 5.1
Identities = 29/83 (34%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = -1
Query: 839 EVSWIARRTQASLAKPGDLVPNKPEPSKNEQEPRFPRSIQALH-LKPLKREAEHGIPSCD 663
EVS + R+ + AKP PN PEP K P P++ + LH +K + E E G +
Sbjct: 64 EVSMM-RQMENEAAKP----PNPPEPPKPPNPPERPKARKLLHFVKVMSFEEEPGTIFTE 118
Query: 662 LQLRSFSVQPLEFFSDFALRAAYY 591
QLR S +E SD ++Y
Sbjct: 119 EQLRLDS-NYMELNSDIFRLESFY 141
>pir||T15369 hypothetical protein C01F1.6 - Caenorhabditis elegans
gb|AAB00714.1| (U58761) C01F1.6 gene product [Caenorhabditis elegans]
Length = 358
Score = 32.3 bits (72), Expect = 5.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = -3
Query: 717 PAPEASKARGRTRHPLMRPPAPILQRPTSRILLRFCSKSGLLPGTP 580
P + + GR+ L+ PP P + PT R+ + SG PG P
Sbjct: 204 PTFQPIRCSGRSSKTLIEPPTPKIATPTGRLPTTWEEYSGAAPGAP 249
>pir||JC6550 sex-determining region Y gene-related protein - mouse
dbj|BAA25786.1| (AB006329) SOX13 [Mus musculus]
Length = 595
Score = 32.3 bits (72), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 741 PVSSIHSGPAPEASKARGRTRHPLMRPPAPI 649
P+ +HS PAP ++ HPL PP P+
Sbjct: 237 PLQLLHSPPAPVVKRSGVAAHHPLQEPPQPL 267
>gb|AAH07130.1|AAH07130 (BC007130) Similar to SRY-box containing gene 13 [Mus musculus]
Length = 595
Score = 32.3 bits (72), Expect = 5.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 741 PVSSIHSGPAPEASKARGRTRHPLMRPPAPI 649
P+ +HS PAP ++ HPL PP P+
Sbjct: 237 PLQLLHSPPAPVVKRSGVAAHHPLQEPPQPL 267
>pir||C81396 alanine--tRNA ligase (EC 6.1.1.7) Cj0506 [imported] - Campylobacter
jejuni (strain NCTC 11168)
emb|CAB75143.1| (AL139075) alanyl-tRNA synthetase [Campylobacter jejuni]
Length = 842
Score = 32.3 bits (72), Expect = 5.1
Identities = 11/42 (26%), Positives = 21/42 (49%)
Frame = -1
Query: 473 RRLIQIRDGNPETVQLWLAYLRKHQFYGVGMKANMWEFSELG 348
R + + + + E LW +++K + Y G K N W+ + G
Sbjct: 120 RLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDTG 161
>ref|NP_059091.1| regulatory factor (trans-acting) 5 [Mus musculus]
gb|AAF68260.1| (AF209854) regulator factor X 5 [Mus musculus]
Length = 658
Score = 32.3 bits (72), Expect = 5.1
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3
Query: 435 GAAVARVPPQAPILRRGNEGQHVGV 361
G RVPP+APIL RG E + VG+
Sbjct: 437 GLGPGRVPPRAPILPRGAENREVGI 461
>gb|AAK15023.1| (AF235032) IgA1 protease [Neisseria meningitidis]
Length = 1552
Score = 32.0 bits (71), Expect = 6.7
Identities = 17/64 (26%), Positives = 34/64 (52%)
Frame = -1
Query: 875 RQSIRPLRAFSSEVSWIARRTQASLAKPGDLVPNKPEPSKNEQEPRFPRSIQALHLKPLK 696
R+ ++P+ + ++ + A+ A +AKP ++V P P N+ E + +A +K +
Sbjct: 969 RRRVKPVPSPATNTASQAQTDSAQIAKPQNIVVAPPSPQANQAEEAKRQQAKAEQVKRQQ 1028
Query: 695 REAE 684
EAE
Sbjct: 1029 AEAE 1032
>gb|AAD04944.1| (AF110314) herpesvirus immunoglobulin-like receptor HIgR [Homo
sapiens]
Length = 458
Score = 32.0 bits (71), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 773 KPEPSKNEQEPRFPRSIQALHLKPLKREAEHGIPSCDLQLRSFSVQP 633
KPEPS + Q P IQ +HL P +++ + + L+ S+QP
Sbjct: 392 KPEPSPSRQSSLVPEDIQVVHLDPGRQQQQE-----EEDLQKLSLQP 433
>gb|AAG16649.1| (AF196774) HVEC cell-cell adhesion molecule/herpesvirus receptor;
HveC; PRR; PRR1; HigR; nectin-1 [Homo sapiens]
Length = 431
Score = 32.0 bits (71), Expect = 6.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 773 KPEPSKNEQEPRFPRSIQALHLKPLKREAEHGIPSCDLQLRSFSVQP 633
KPEPS + Q P IQ +HL P +++ + + L+ S+QP
Sbjct: 365 KPEPSPSRQSSLVPEDIQVVHLDPGRQQQQE-----EEDLQKLSLQP 406
>ref|NP_076420.1| hypothetical protein MGC2474 [Homo sapiens]
ref|XP_016901.1| hypothetical protein MGC2474 [Homo sapiens]
gb|AAH01361.1|AAH01361 (BC001361) Unknown (protein for MGC:2474) [Homo sapiens]
Length = 191
Score = 31.6 bits (70), Expect = 8.8
Identities = 16/58 (27%), Positives = 27/58 (45%)
Frame = -2
Query: 421 SRTSASTNSTAWE*RPTCGSLASWARVRRWMLYQRQRRARSTPSGHISDRPRPLERWR 248
S ++ +S W RP CG R+RRW +++R + + D+ + E WR
Sbjct: 125 SEAASRRSSPGWRRRPNCG--IRLPRIRRWRSVRQKRTQQIPETRKRKDKGKGREPWR 180
>gb|AAC18044.1| (AF039695) antigen NY-CO-25 [Homo sapiens]
Length = 872
Score = 31.6 bits (70), Expect = 8.8
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Frame = -1
Query: 530 PRDNFIFKKSQENFERKTLRRLIQIRD-----GNPETVQLWLAYLRKHQFYGVGMKANMW 366
P + FI ++ +NF LR L + D G + Q ++ L + G +K
Sbjct: 666 PYEKFICEQDHQNF----LRLLTETEDWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQ 721
Query: 365 E-------FSELGEGKKMDALPEAEKGEIDAKWSHIGQTKTIGTMEKVEQILNQ 225
E F ELG+ + A A+ D K++HI +++ M+KVE+ +N+
Sbjct: 722 EAEERPKMFEELGQRLQHYAKIAADFRNKDEKYNHIDESE----MKKVEKSVNE 771
>ref|NP_006635.1| heat shock 105kD; heat shock 105kD beta; heat shock 105kD alpha
[Homo sapiens]
dbj|BAA34779.1| (AB003333) HSP105 beta [Homo sapiens]
Length = 814
Score = 31.6 bits (70), Expect = 8.8
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Frame = -1
Query: 530 PRDNFIFKKSQENFERKTLRRLIQIRD-----GNPETVQLWLAYLRKHQFYGVGMKANMW 366
P + FI ++ +NF LR L + D G + Q ++ L + G +K
Sbjct: 608 PYEKFICEQDHQNF----LRLLTETEDWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQ 663
Query: 365 E-------FSELGEGKKMDALPEAEKGEIDAKWSHIGQTKTIGTMEKVEQILNQ 225
E F ELG+ + A A+ D K++HI +++ M+KVE+ +N+
Sbjct: 664 EAEERPKMFEELGQRLQHYAKIAADFRNKDEKYNHIDESE----MKKVEKSVNE 713
>ref|NP_041022.1| tegument protein [Equine herpesvirus 1]
sp|P28929|UL47_HSVEB 97 KD ALPHA TRANS-INDUCING PROTEIN (TEGUMENT PROTEIN) (GP10)
pir||TNBEA1 97K alpha trans-inducing protein - equine herpesvirus 1 (strain
Ab4p)
gb|AAB02448.1| (M86664) tegument protein [Equine herpesvirus 1]
Length = 871
Score = 31.6 bits (70), Expect = 8.8
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 1 GPPLRVXXXXXXTKPKPYMAYCTTQDRYSMPLISSKDGYSSRITS 135
G P+R ++ P+ A TQ YS P +S +DG S R S
Sbjct: 10 GAPIRRPRRSIESRSHPFRATGNTQRTYSTPRLSYRDGLSGRTAS 54
>sp|Q92598|H105_HUMAN HEAT-SHOCK PROTEIN 105 KDA (HEAT SHOCK 110 KDA PROTEIN)
dbj|BAA13192.1| (D86956) similar to mouse heat shock protein 105 kDa beta [Homo
sapiens]
dbj|BAA34780.1| (AB003334) HSP105 alpha [Homo sapiens]
Length = 858
Score = 31.6 bits (70), Expect = 8.8
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Frame = -1
Query: 530 PRDNFIFKKSQENFERKTLRRLIQIRD-----GNPETVQLWLAYLRKHQFYGVGMKANMW 366
P + FI ++ +NF LR L + D G + Q ++ L + G +K
Sbjct: 652 PYEKFICEQDHQNF----LRLLTETEDWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQ 707
Query: 365 E-------FSELGEGKKMDALPEAEKGEIDAKWSHIGQTKTIGTMEKVEQILNQ 225
E F ELG+ + A A+ D K++HI +++ M+KVE+ +N+
Sbjct: 708 EAEERPKMFEELGQRLQHYAKIAADFRNKDEKYNHIDESE----MKKVEKSVNE 757
>gb|AAF05592.1|AF188717_1 (AF188717) alanyl-tRNA synthetase [Dictyostelium discoideum]
Length = 946
Score = 31.6 bits (70), Expect = 8.8
Identities = 13/31 (41%), Positives = 16/31 (50%)
Frame = -1
Query: 440 ETVQLWLAYLRKHQFYGVGMKANMWEFSELG 348
E LWL YL + + GMK N WE + G
Sbjct: 148 EAKNLWLQYLPEERVLPFGMKENFWEMGDQG 178
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 402,717,272
Number of Sequences: 705144
Number of extensions: 9740533
Number of successful extensions: 30715
Number of sequences better than 10.0: 166
Number of HSP's better than 10.0 without gapping: 28173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30666
length of database: 222,175,239
effective HSP length: 118
effective length of database: 138,968,247
effective search space used: 25153252707
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)