The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr_contig0023.seq Fgr_contig0023
(1214 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_012272.1| Yir007wp [Saccharomyces cerevisiae] >gi|73... 139 6e-32
emb|CAA86077.1| (Z37996) incomplete orf, len: 744, CAI: 0.1... 139 6e-32
pir||S71558 probable cell wall-plasma membrane linker prote... 38 0.14
pir||B83020 hypothetical protein PA5006 [imported] - Pseudo... 34 2.7
ref|XP_011405.3| HLA-B associated transcript-2 [Homo sapiens] 33 3.5
gb|AAD18086.1|AAD18086 (AF129756) BAT2 [Homo sapiens] 33 3.5
ref|NP_004629.1| HLA-B associated transcript-2 [Homo sapien... 33 3.5
dbj|BAB09942.1| (AB005249) contains similarity to unknown p... 33 3.5
gb|AAC17609.1| (AC002131) Strong similarity to extensin-lik... 33 6.0
gb|AAA45797.1| (M17921) latency associated transcript (LAT)... 33 6.0
pir||S34583 serine proteinase (EC 3.4.21.-) PC6B - mouse >g... 32 7.9
sp|Q04592|PCK5_MOUSE PROPROTEIN CONVERTASE SUBTILISIN/KEXIN... 32 7.9
>ref|NP_012272.1| Yir007wp [Saccharomyces cerevisiae]
sp|P40566|YIS7_YEAST HYPOTHETICAL 87.0 KD PROTEIN IN PAN1-PRI1 INTERGENIC REGION
pir||S50878 hypothetical protein YIR007w - yeast (Saccharomyces cerevisiae)
Length = 764
Score = 139 bits (349), Expect = 6e-32
Identities = 94/294 (31%), Positives = 144/294 (48%), Gaps = 7/294 (2%)
Frame = +2
Query: 8 AIRIGETAIRNCLRDQLATLRQEGLDRTGKH-PCVLSEFGIPYDMDDKKAYKTGDYSSQS 184
A+ +GE IR C+R QL+ ++++ GK P +E GIP+DMDDKKAY T DYSSQ+
Sbjct: 478 AVVLGENNIRKCIRKQLSEMQKDAKSMLGKKVPVFFTEIGIPFDMDDKKAYITNDYSSQT 537
Query: 185 AAMDANYFAVEGSQIEGHCLWTYCARNDHVRGDFWNGEXXXXXX-----XXXXXXXXXXX 349
AA+DA FA+EGS + + LW YC+ N H+ GD WN E
Sbjct: 538 AALDALGFALEGSNL-SYTLWCYCSINSHIWGDNWNNEDFSIWSPDDKPLYHDTRAKTPT 596
Query: 350 XEYSQSTLDLARTATATNGKKDVADDRNVTPDNLKRTLTNPSISSAPSTKDPQLTNAPGY 529
E S ++ +A +T+T+ + PDN L +PS + ++ G+
Sbjct: 597 PEPSPAS-TVASVSTSTSKSGSSQPPSFIKPDN-HLDLDSPSCTLK--------SDLSGF 646
Query: 530 RAAEAYVRPTPTAVYGDVVSTGFDLRQCTYVLK-VXXXXXXXXXXXTIVFLPEYHFPKDQ 706
RA +A +RP P ++G F+L +Y+LK V T +F+P +HF +
Sbjct: 647 RALDAIMRPFPIQIHGRFEFAEFNLCNKSYLLKLVGKTTPEQITVPTYIFIPRHHFTPSR 706
Query: 707 CDVAVSSGKWELSIDDEEGTSLQMLRWWHGEGEQSLKISGLVRKHNVPVGSEEDAGYLEQ 886
+ SSG + + T Q+L W+H G Q ++I + GS+ +
Sbjct: 707 LSIRSSSGHYTYN------TDYQVLEWFHEPGHQFIEICAKSKSRPNTPGSDTSNDLPAE 760
Query: 887 C 889
C
Sbjct: 761 C 761
>emb|CAA86077.1| (Z37996) incomplete orf, len: 744, CAI: 0.14 [Saccharomyces
cerevisiae]
Length = 744
Score = 139 bits (349), Expect = 6e-32
Identities = 94/294 (31%), Positives = 144/294 (48%), Gaps = 7/294 (2%)
Frame = +2
Query: 8 AIRIGETAIRNCLRDQLATLRQEGLDRTGKH-PCVLSEFGIPYDMDDKKAYKTGDYSSQS 184
A+ +GE IR C+R QL+ ++++ GK P +E GIP+DMDDKKAY T DYSSQ+
Sbjct: 458 AVVLGENNIRKCIRKQLSEMQKDAKSMLGKKVPVFFTEIGIPFDMDDKKAYITNDYSSQT 517
Query: 185 AAMDANYFAVEGSQIEGHCLWTYCARNDHVRGDFWNGEXXXXXX-----XXXXXXXXXXX 349
AA+DA FA+EGS + + LW YC+ N H+ GD WN E
Sbjct: 518 AALDALGFALEGSNL-SYTLWCYCSINSHIWGDNWNNEDFSIWSPDDKPLYHDTRAKTPT 576
Query: 350 XEYSQSTLDLARTATATNGKKDVADDRNVTPDNLKRTLTNPSISSAPSTKDPQLTNAPGY 529
E S ++ +A +T+T+ + PDN L +PS + ++ G+
Sbjct: 577 PEPSPAS-TVASVSTSTSKSGSSQPPSFIKPDN-HLDLDSPSCTLK--------SDLSGF 626
Query: 530 RAAEAYVRPTPTAVYGDVVSTGFDLRQCTYVLK-VXXXXXXXXXXXTIVFLPEYHFPKDQ 706
RA +A +RP P ++G F+L +Y+LK V T +F+P +HF +
Sbjct: 627 RALDAIMRPFPIQIHGRFEFAEFNLCNKSYLLKLVGKTTPEQITVPTYIFIPRHHFTPSR 686
Query: 707 CDVAVSSGKWELSIDDEEGTSLQMLRWWHGEGEQSLKISGLVRKHNVPVGSEEDAGYLEQ 886
+ SSG + + T Q+L W+H G Q ++I + GS+ +
Sbjct: 687 LSIRSSSGHYTYN------TDYQVLEWFHEPGHQFIEICAKSKSRPNTPGSDTSNDLPAE 740
Query: 887 C 889
C
Sbjct: 741 C 741
>pir||S71558 probable cell wall-plasma membrane linker protein PRP precursor -
rape
emb|CAA64425.1| (X94976) cell wall-plasma membrane linker protein [Brassica napus]
Length = 376
Score = 38.1 bits (87), Expect = 0.14
Identities = 21/69 (30%), Positives = 29/69 (41%)
Frame = +3
Query: 387 LRPPQMERRMSPMIETLHPIISNERSPTHPSALRPPLRILS*PTHPATVLPKPMCAQHPP 566
++PP + T+ P S + PT P ++PP PT P TV P P + P
Sbjct: 104 IKPPPSTPKPPTKPPTVKPPPSTPKPPTKPPTVKPPPSTPKPPTKPPTVKPPPSTPKPPT 163
Query: 567 QCTVTSCLP 593
T C P
Sbjct: 164 HKPPTVCPP 172
Score = 33.5 bits (75), Expect = 3.5
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 420 PMIETLHPIISNERSPTHPSALRPPLRILS*PTHPATVLPKPMCAQHP 563
P T+ P S + PT P ++PP PT P TV P P + P
Sbjct: 99 PKPPTIKPPPSTPKPPTKPPTVKPPPSTPKPPTKPPTVKPPPSTPKPP 146
>pir||B83020 hypothetical protein PA5006 [imported] - Pseudomonas aeruginosa
(strain PAO1)
gb|AAG08391.1|AE004913_6 (AE004913) hypothetical protein [Pseudomonas aeruginosa]
Length = 492
Score = 33.9 bits (76), Expect = 2.7
Identities = 23/69 (33%), Positives = 29/69 (41%)
Frame = -1
Query: 332 AVCHPMRESTSPLRSKSLLGRDRSSHNMSKGSVLQFAILRQQSNWRPLPLTGLNSHQSCK 153
AV P E + R S L R+R SH KG L + Q W + L + H S
Sbjct: 393 AVSPPEAELAALDRLFSTLIRERISHGDLKGHNLFWQAHEQGGEWALIDLDAMRKHHSQA 452
Query: 152 PFCRPYRRE 126
F R Y R+
Sbjct: 453 SFARAYARD 461
>ref|XP_011405.3| HLA-B associated transcript-2 [Homo sapiens]
Length = 2060
Score = 33.5 bits (75), Expect = 3.5
Identities = 20/63 (31%), Positives = 30/63 (46%)
Frame = +3
Query: 405 ERRMSPMIETLHPIISNERSPTHPSALRPPLRILS*PTHPATVLPKPMCAQHPPQCTVTS 584
++ + PM+++ P+++ P P PPL +L P PA L P A PP T
Sbjct: 1880 QQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLL--PVGPA--LQPPSLAVRPPPAPATR 1935
Query: 585 CLP 593
LP
Sbjct: 1936 VLP 1938
>gb|AAD18086.1|AAD18086 (AF129756) BAT2 [Homo sapiens]
Length = 2157
Score = 33.5 bits (75), Expect = 3.5
Identities = 20/63 (31%), Positives = 30/63 (46%)
Frame = +3
Query: 405 ERRMSPMIETLHPIISNERSPTHPSALRPPLRILS*PTHPATVLPKPMCAQHPPQCTVTS 584
++ + PM+++ P+++ P P PPL +L P PA L P A PP T
Sbjct: 1977 QQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLL--PVGPA--LQPPSLAVRPPPAPATR 2032
Query: 585 CLP 593
LP
Sbjct: 2033 VLP 2035
>ref|NP_004629.1| HLA-B associated transcript-2 [Homo sapiens]
sp|P48634|BAT2_HUMAN LARGE PROLINE-RICH PROTEIN BAT2 (HLA-B-ASSOCIATED TRANSCRIPT 2)
pir||B35098 MHC class III histocompatibility antigen HLA-B-associated protein 2
[imported] - human
gb|AAA35585.1| (M33509) HLA-B-associated transcript 2 (BAT2) [Homo sapiens]
gb|AAA35586.1| (M33518) HLA-B-associated transcript 2 (BAT2) [Homo sapiens]
Length = 2142
Score = 33.5 bits (75), Expect = 3.5
Identities = 20/63 (31%), Positives = 30/63 (46%)
Frame = +3
Query: 405 ERRMSPMIETLHPIISNERSPTHPSALRPPLRILS*PTHPATVLPKPMCAQHPPQCTVTS 584
++ + PM+++ P+++ P P PPL +L P PA L P A PP T
Sbjct: 1962 QQMLLPMVDSQLPVVNFGSLPPAPPPAPPPLSLL--PVGPA--LQPPSLAVRPPPAPATR 2017
Query: 585 CLP 593
LP
Sbjct: 2018 VLP 2020
>dbj|BAB09942.1| (AB005249) contains similarity to unknown
protein~gb|AAF45601.1~gene_id:MXM12.2 [Arabidopsis
thaliana]
Length = 464
Score = 33.5 bits (75), Expect = 3.5
Identities = 23/72 (31%), Positives = 35/72 (47%), Gaps = 8/72 (11%)
Frame = +3
Query: 393 PPQMERRMSPMIETLHPIISNERSPTHPSALRPPLRILS*PTHPATVLPKPMCAQHPPQC 572
PP + RR +P+ P + R+P P P +R + P P LP+P +C
Sbjct: 19 PPPLMRRRAPLPPPPPPPLMRRRAPPPPPP--PLMRRRAPPPPPPPPLPRPCSRPPKTKC 76
Query: 573 TV--------TSCLPGSICD 608
++ T LPGS+ D
Sbjct: 77 SLKPLHWVKKTRALPGSLWD 96
>gb|AAC17609.1| (AC002131) Strong similarity to extensin-like protein gb|Z34465
from Zea mays. [Arabidopsis thaliana]
gb|AAK07681.1| (AY026364) leucine-rich repeat/extensin 1 [Arabidopsis thaliana]
Length = 744
Score = 32.7 bits (73), Expect = 6.0
Identities = 21/58 (36%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Frame = +3
Query: 393 PPQMERRMSPMIETLHPIISNERSPTHP--SALRPPLRILS*PTHPATVLPKPMCAQHPP 566
PP +MSP + TL P I SP P S + P +R S P P++ + + A PP
Sbjct: 383 PPPPTFKMSPEVRTLPPPIYVYSSPPPPPSSKMSPTVRAYSPPPPPSSKMSPSVRAYSPP 442
>gb|AAA45797.1| (M17921) latency associated transcript (LAT) ORF-2 [human
herpesvirus 1]
Length = 305
Score = 32.7 bits (73), Expect = 6.0
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 4/56 (7%)
Frame = +3
Query: 396 PQMERRMSPMIETLH-PIISNERSPTHPSALRPPLRILS*PTHP---ATVLPKPMCAQHP 563
P + R +P H P + +PTHP + PPL PTHP A LP+ HP
Sbjct: 37 PPLPRTPTPTHPHSHAPPLPRTPTPTHPHSHAPPLPRTPTPTHPHSHAPPLPRTPTPTHP 96
>pir||S34583 serine proteinase (EC 3.4.21.-) PC6B - mouse
dbj|BAA04507.1| (D17583) PC6B [Mus musculus]
Length = 1548
Score = 32.3 bits (72), Expect = 7.9
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +1
Query: 391 DRHKWKEGCRR*SKRYTR*SQTNAHQPIHQLCALH*GSSANQRTRLPCCRSLCAPNTHXX 570
DR KWK +R T+ +QP H C C SLCA
Sbjct: 864 DRRKWKVQIKR--------DATSQNQPCHSSCKT-------------CNGSLCA------ 896
Query: 571 XXXXXXXXXXXATVHICPQGQG---AKGSTRRCSHDCV 675
A V CPQG GS +CS DCV
Sbjct: 897 SCPTGMYLWLQACVPSCPQGTWPSVTSGSCEKCSEDCV 934
>sp|Q04592|PCK5_MOUSE PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 5 PRECURSOR (PROPROTEIN
CONVERTASE PC5) (SUBTILISIN/KEXIN-LIKE PROTEASE PC5)
(CONVERTASE PC5) (PC6) (SUBTILISIN-LIKE PROPROTEIN
CONVERTASE 6) (SPC6)
Length = 1877
Score = 32.3 bits (72), Expect = 7.9
Identities = 29/95 (30%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Frame = +1
Query: 391 DRHKWKEGCRR*SKRYTR*SQTNAHQPIHQLCALH*GSSANQRTRLPCCRSLCAPNTHXX 570
DR KWK +R T+ +QP H C C SLCA
Sbjct: 1193 DRRKWKVQIKR--------DATSQNQPCHSSCKT-------------CNGSLCA------ 1225
Query: 571 XXXXXXXXXXXATVHICPQGQG---AKGSTRRCSHDCV 675
A V CPQG GS +CS DCV
Sbjct: 1226 SCPTGMYLWLQACVPSCPQGTWPSVTSGSCEKCSEDCV 1263
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,882,508
Number of Sequences: 705144
Number of extensions: 11922750
Number of successful extensions: 33958
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 30989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33860
length of database: 222,175,239
effective HSP length: 121
effective length of database: 136,852,815
effective search space used: 38729346645
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)