The query sequence for this search has been filtered. Filtering
eliminates low complexity regions that commonly give spuriously high
scores that reflect compositional bias rather than significant
position-by-position alignment. Filtering can eliminate these potentially
confounding matches (e.g., hits against proline-rich regions or poly-A
tails) from the blast reports, leaving regions whose blast statistics
reflect the specificity of their pairwise alignment.
BLASTX 2.2.1 [Apr-13-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Fgr_contig0024.seq Fgr_contig0024
(1473 letters)
Database: nr
705,144 sequences; 222,175,239 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB16878.1| (AB035592) complement regulatory membrane p... 36 0.92
pir||T44768 antifreeze glycopeptide AFGP polyprotein precur... 35 2.0
pir||A32230 tenascin precursor - chicken >gi|211718|gb|AAA4... 34 3.5
gb|AAD37247.1|AF134321_1 (AF134321) chimeric AFGP/trypsinog... 33 5.9
pir||B40505 hypothetical protein - suid herpesvirus 1 (stra... 33 5.9
gb|AAF79873.1|AC000348_26 (AC000348) T7N9.17 [Arabidopsis t... 33 5.9
gb|AAA48748.1| (M20816) cytotactin [Gallus gallus] 33 7.8
pir||H69043 conserved hypothetical protein MTH1330 - Methan... 33 7.8
pir||A31930 cytotactin - chicken (fragments) 33 7.8
>dbj|BAB16878.1| (AB035592) complement regulatory membrane protein [Gallus gallus]
Length = 451
Score = 35.8 bits (81), Expect = 0.92
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 1093 CHQGWSRRGGRPC*ACQTCGDQQSWEQVRGWCCHRRCCQPCENQS 959
C G+ R G P +TCG+ W Q+ +C R C P E Q+
Sbjct: 55 CRPGYMRIPGMP--VSRTCGENLMWSQIETFCTARSCTHPGELQN 97
>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
Boreogadus saida
gb|AAC60129.1| (U43200) antifreeze glycopeptide AFGP polyprotein precursor
[Boreogadus saida]
Length = 507
Score = 34.7 bits (78), Expect = 2.0
Identities = 41/236 (17%), Positives = 45/236 (18%), Gaps = 2/236 (0%)
Frame = +2
Query: 440 PATLQDLALPATPLVFPRAASVPTAAXXXXXXXXXXXXXWTAPVTPELATPPAELDLTLR 619
PAT LA ATP A+ TAA P TP A PA T
Sbjct: 263 PATAATLATAATPAT---PATPATAATDATAATAATPARAATPATPATAATPA-TPATAA 318
Query: 620 TCPDXXXXXXXX--XXXXXXXTPRTCPVTXXXXXXXXXXXXXXXXVSAPTAXXXXXXXXX 793
T TP T T +A T
Sbjct: 319 TAATAATAATAATPARAARAATPATA-ATPATAATAATAATAATAATAATPARAARAATP 377
Query: 794 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 973
Sbjct: 378 ATAATAATAATAATAATAATPARAARAATPATPATPATPATPATAATAATAATAATAATA 437
Query: 974 XXXXXXMTAPTPDLLPRLLVPTSLTCSTRPTPASTPTLMAAXXXXXXXXXXXXXXXXT 1147
TAPTP R P +T TPA+ PT A T
Sbjct: 438 ATAATAATAPTPARAARAATP-----ATGATPATAPTAGTAATAATAATAATPARAST 490
>pir||A32230 tenascin precursor - chicken
gb|AAA48745.1| (J04519) cytotactin precursor [Gallus gallus]
Length = 1810
Score = 33.9 bits (76), Expect = 3.5
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 5/41 (12%)
Frame = -3
Query: 589 CGQLRCDGSCPSQSRH-GGQQRWQHGC----CGDRRCPREDQRSGR 467
CG+LRC C ++ R GQ G CG+ RCP + Q+ GR
Sbjct: 404 CGELRCPNDCHNRGRCINGQCVCDEGFIGEDCGELRCPNDCQQRGR 449
>gb|AAD37247.1|AF134321_1 (AF134321) chimeric AFGP/trypsinogen-like serine protease precursor
[Dissostichus mawsoni]
Length = 675
Score = 33.1 bits (74), Expect = 5.9
Identities = 28/238 (11%), Positives = 36/238 (14%), Gaps = 3/238 (1%)
Frame = +2
Query: 440 PATLQDLALP---ATPLVFPRAASVPTAAXXXXXXXXXXXXXWTAPVTPELATPPAELDL 610
PAT A P ATP ++ A + A TA AT
Sbjct: 47 PATAATAATPATAATPALYFAATAATAATAATAATAATAATAATAATAATAATAATAATA 106
Query: 611 TLRTCPDXXXXXXXXXXXXXXXTPRTCPVTXXXXXXXXXXXXXXXXVSAPTAXXXXXXXX 790
T T +A A
Sbjct: 107 ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA 166
Query: 791 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 970
A
Sbjct: 167 ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA 226
Query: 971 XXXXXXXMTAPTPDLLPRLLVPTSLTCSTRPTPASTPTLMAAXXXXXXXXXXXXXXXXTT 1150
A T+ T +T T A+ T A T
Sbjct: 227 ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA 286
Query: 1151 S 1153
+
Sbjct: 287 A 287
Score = 32.7 bits (73), Expect = 7.8
Identities = 31/238 (13%), Positives = 37/238 (15%), Gaps = 2/238 (0%)
Frame = +2
Query: 440 PATLQDLAL--PATPLVFPRAASVPTAAXXXXXXXXXXXXXWTAPVTPELATPPAELDLT 613
PAT AL ATP AA+ TAA TA AT
Sbjct: 33 PATAATPALIFAATPATAATAATPATAATPALYFAATAATAATAATAATAATAATAATAA 92
Query: 614 LRTCPDXXXXXXXXXXXXXXXTPRTCPVTXXXXXXXXXXXXXXXXVSAPTAXXXXXXXXX 793
T T +A A
Sbjct: 93 TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA 152
Query: 794 XXXXXXXXXXXXXXXXXXXXXXXXXXXXAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 973
A
Sbjct: 153 TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA 212
Query: 974 XXXXXXMTAPTPDLLPRLLVPTSLTCSTRPTPASTPTLMAAXXXXXXXXXXXXXXXXTTS 1153
A T+ T +T T A+ T A T +
Sbjct: 213 TAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAA 272
>pir||B40505 hypothetical protein - suid herpesvirus 1 (strain Indiana-Funkhuser
or Becker)
gb|AAA47468.1| (M57505) ORF2 [Pseudorabies virus]
Length = 1958
Score = 33.1 bits (74), Expect = 5.9
Identities = 20/66 (30%), Positives = 27/66 (40%)
Frame = +3
Query: 1140 PRQPRTSTVSHHCHFYSDPNFAGRDPTDATQVPPSIMQKHVPTEIAHDNPESDHGRRHSS 1319
P P T + SHH H + P + R T + Q PP T H + + G S
Sbjct: 320 PPGPPTPSTSHHHHHHQGPPTSPRPSTSSHQDPPGGGPPSAETH--HHHHQDPPGGGPPS 377
Query: 1320 TTKEHH 1337
T+ HH
Sbjct: 378 TSSHHH 383
>gb|AAF79873.1|AC000348_26 (AC000348) T7N9.17 [Arabidopsis thaliana]
Length = 519
Score = 33.1 bits (74), Expect = 5.9
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = +3
Query: 861 HHRYFWLFQPRCRCSRSYRHPHWHPQLWHDRCSLWFSHGWQH 986
HH + Q CR + + H W SL FSH W H
Sbjct: 174 HHALCHVLQTECRFKEAVKFMEEHSDSWDSCSSLRFSHNWWH 215
>gb|AAA48748.1| (M20816) cytotactin [Gallus gallus]
Length = 672
Score = 32.7 bits (73), Expect = 7.8
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Frame = -3
Query: 598 RRWCGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 467
R CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 5 REDCGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 53
>pir||H69043 conserved hypothetical protein MTH1330 - Methanobacterium
thermoautotrophicum (strain Delta H)
gb|AAB85808.1| (AE000896) conserved protein [Methanothermobacter
thermautotrophicus]
Length = 319
Score = 32.7 bits (73), Expect = 7.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 906 RSYRHPHWHPQLWHDRCSLWFSHGW 980
+ +RH HWHP W RCS + HGW
Sbjct: 239 KKWRHKHWHPWKW--RCS-YHWHGW 260
>pir||A31930 cytotactin - chicken (fragments)
Length = 933
Score = 32.7 bits (73), Expect = 7.8
Identities = 19/44 (43%), Positives = 22/44 (49%), Gaps = 5/44 (11%)
Frame = -3
Query: 598 RRWCGQLRCDGSCPSQSR-HGGQQRWQHGC----CGDRRCPREDQRSGR 467
R CG+LRC C S R GQ G CG+ RCP + GR
Sbjct: 5 REDCGELRCPNDCNSHGRCVNGQCVCDEGYTGEDCGELRCPNDCHNRGR 53
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,217,446
Number of Sequences: 705144
Number of extensions: 8565022
Number of successful extensions: 29327
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29071
length of database: 222,175,239
effective HSP length: 123
effective length of database: 135,442,527
effective search space used: 49707407409
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)