Score E
Sequences producing significant alignments: (bits) Value
pir||T46146 hypothetical protein T3A5.70 - Arabidopsis thal... 44 0.004
gb|AAK51573.1|AC022352_9 (AC022352) Hypothetical protein [O... 36 0.85
ref|NP_055644.1| KIAA0801 gene product [Homo sapiens] >gi|3... 35 1.4
ref|NP_064475.1| sodium/calcium/potassium exchanger [Rattus... 35 1.9
sp|P13821|SANT_PLAFW S-ANTIGEN PROTEIN PRECURSOR >gi|627066... 35 1.9
sp|Q58280|Y870_METJA HYPOTHETICAL PROTEIN MJ0870 >gi|212782... 35 1.9
pir||E69135 coenzyme F420-reducing hydrogenase, beta subuni... 34 2.5
ref|NP_110390.1| nucleosomal binding protein 1 [Homo sapien... 34 2.5
pir||T32758 hypothetical protein T12F5.4 - Caenorhabditis e... 34 3.2
emb|CAB92250.1| (AL356595) putative ATP-binding membrane pr... 34 3.2
gb|AAG09099.1|AC009323_10 (AC009323) Unknown protein [Arabi... 34 3.2
gb|AAG00554.1|AF286475_1 (AF286475) retinitis pigmentosa GT... 34 3.2
ref|NP_057214.1| RNA helicase [Homo sapiens] >gi|5410326|gb... 33 4.2
emb|CAB75380.1| (AL139298) hypothetical protein SCC88.10c [... 33 4.2
pir||A57514 RNA helicase HEL117 - rat >gi|897915|gb|AAC5221... 33 4.2
gb|AAK52958.1|AF367243_1 (AF367243) bile salt export pump [... 33 4.2
gb|AAK53006.1|AF375422_1 (AF375422) AT4g36980/C7A10_380 [Ar... 33 5.5
pir||B29795 circumsporozoite protein - malaria parasite (Pl... 33 5.5
dbj|BAA85428.1| (AP000616) similar to MADS-box protein AGL1... 33 7.2
ref|NP_005446.1| zinc finger protein 265; zinc-finger, spli... 32 9.4
sp|O95218|Z265_HUMAN ZINC FINGER PROTEIN 265 (ZINC FINGER, ... 32 9.4
ref|NP_003438.1| zinc finger protein 165 [Homo sapiens] >gi... 32 9.4
gb|AAD08945.1| (AC005724) SNF2/RAD54 family (RAD26 subfamil... 32 9.4
pir||T28899 hypothetical protein T17H7.1 - Caenorhabditis e... 32 9.4
>pir||T46146 hypothetical protein T3A5.70 - Arabidopsis thaliana
emb|CAB62438.1| (AL132979) putative protein [Arabidopsis thaliana]
Length = 447
Score = 43.5 bits (101), Expect = 0.004
Identities = 45/147 (30%), Positives = 65/147 (43%), Gaps = 7/147 (4%)
Frame = +3
Query: 819 DDVDPGGAKLDADERAD----QVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEA 986
D+ DPG ++D DERA+ G SE V V +ES++E ES Q ++GT
Sbjct: 183 DEEDPGSGEIDGDERAEAPRMSNGHSERVDGVVDVDEDEESDAEDDES-EQATGVNGT-- 239
Query: 987 TSRSKEAECSAERRGNRLAMAGGSRSR---GNTRRLGDVVVGDRLDGERCVSGRLLIFDD 1157
S G RL G R G+ G+ VG+ D ++ +
Sbjct: 240 ---------SYRANGFRLEAVNGEEVREDDGDDSESGEEEVGEDND--------VVEVHE 282
Query: 1158 GEDGEDLFKGVRAKEKDWEKENEVGQKDVERPVG 1259
ED E+ GV +E D E E E + +R +G
Sbjct: 283 IEDSENEEDGVDDEEDDEEDEEEEEVDNADRGLG 316
>gb|AAK51573.1|AC022352_9 (AC022352) Hypothetical protein [Oryza sativa]
Length = 234
Score = 35.8 bits (81), Expect = 0.85
Identities = 33/140 (23%), Positives = 57/140 (40%)
Frame = +3
Query: 816 NDDVDPGGAKLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSR 995
+DD D A + E AD VGD+ +V R ++ +G E+ ++ G R
Sbjct: 76 DDDDDGAPAVGERSEGADGVGDNAAKPMEVAPSREEDRSDDGGET--ELGGDGGERGARR 133
Query: 996 SKEAECSAERRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGED 1175
+++ +ERR A RS G+ D + +G R + F D
Sbjct: 134 ELDSDGESERR----AAETEERSTGD-----DFIASGGREGGRRERKPAVEFSGSIDAPA 184
Query: 1176 LFKGVRAKEKDWEKENEVGQ 1235
G ++ E + E+E + G+
Sbjct: 185 EIAGFKSDESEGEREGKAGE 204
>ref|NP_055644.1| KIAA0801 gene product [Homo sapiens]
dbj|BAA34521.1| (AB018344) KIAA0801 protein [Homo sapiens]
Length = 1032
Score = 35.0 bits (79), Expect = 1.4
Identities = 38/130 (29%), Positives = 55/130 (42%)
Frame = +3
Query: 852 ADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAERRG 1031
+D+R+ + GD RS R RR + S S + + SRS+E + S ERR
Sbjct: 28 SDKRSKR-GDDRRSRSRDRDRRRERSRSR--DKRRSRSRDRKRLRRSRSRERDRSRERRR 84
Query: 1032 NRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLFKGVRAKEKDW 1211
+R SRSR RR G++ S D GE ++ K +K+
Sbjct: 85 SRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKE--KKKDKDDKED 142
Query: 1212 EKENEVGQKD 1241
EKE + G D
Sbjct: 143 EKEKDAGNFD 152
>ref|NP_064475.1| sodium/calcium/potassium exchanger [Rattus norvegicus]
gb|AAD53121.1|AF176688_1 (AF176688) sodium/calcium/potassium exchanger NCKX1 [Rattus
norvegicus]
Length = 1181
Score = 34.7 bits (78), Expect = 1.9
Identities = 31/125 (24%), Positives = 52/125 (40%), Gaps = 1/125 (0%)
Frame = +3
Query: 867 DQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAERRGNRLAM 1046
+Q G++E +V + E+E+EG E H+V TEA + E E G
Sbjct: 814 EQEGETEAEGKEVEQE--GETEAEGKEVEHEVE----TEAERKETNHEGETEAEGKEADH 867
Query: 1047 AGGSRSRGNTRRLGDVVVGDRLDGE-RCVSGRLLIFDDGEDGEDLFKGVRAKEKDWEKEN 1223
G + + GN G+ +++ E +G D +G+ + + KD E E
Sbjct: 868 EGETEAEGNVEHQGETEAEGKVEHEGETEAGE----KDEHEGQSETQADDTEVKDGEGEA 923
Query: 1224 EVGQKD 1241
E +D
Sbjct: 924 EANAED 929
>sp|P13821|SANT_PLAFW S-ANTIGEN PROTEIN PRECURSOR
pir||A54502 S antigen precursor - malaria parasite (Plasmodium falciparum)
(strain Wellcome)
gb|AAA29760.1| (M18824) S antigen precursor [Plasmodium falciparum]
Length = 640
Score = 34.7 bits (78), Expect = 1.9
Identities = 29/94 (30%), Positives = 43/94 (44%), Gaps = 3/94 (3%)
Frame = +1
Query: 343 GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---GLDAAIE*TVEGND 513
G+EG NSD D + P G+ GP+ ++G P +D D D +G+
Sbjct: 87 GQEGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPNSDGDKGPNSDGDK 145
Query: 514 GVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
G G ++G N ++ + G N DGD S PN
Sbjct: 146 GPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 180
Score = 34.3 bits (77), Expect = 2.5
Identities = 32/109 (29%), Positives = 46/109 (41%), Gaps = 3/109 (2%)
Frame = +1
Query: 298 QGGQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND-- 471
Q G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 88 QEGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKG 146
Query: 472 -GLDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 147 PNSDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 196
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 234 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 292
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 293 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 340
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 330 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 388
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 389 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 436
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 338 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 396
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 397 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 444
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 410 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 468
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 469 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 516
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 450 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 508
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 509 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 556
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 258 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 316
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 317 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 364
Score = 33.1 bits (74), Expect = 5.5
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 3/107 (2%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNGSVAPTADND---G 474
G D N G +G NSD D + P G+ GP+ ++G P +D D
Sbjct: 162 GPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPNSDGDKGPN-SDGDKGPNSDGDKGPN 220
Query: 475 LDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDHDAPN 624
D +G+ G G ++G N ++ + G N DGD S PN
Sbjct: 221 SDGDKGPNSDGDKGPNSDG-DKGPN-SDGDKGPNSDGDKGPNSDGDKGPN 268
>sp|Q58280|Y870_METJA HYPOTHETICAL PROTEIN MJ0870
pir||F64408 coenzyme F420 hydrogenase (EC 1.12.99.1) beta chain homolog -
Methanococcus jannaschii
gb|AAB98876.1| (U67531) coenzyme F420-reducing hydrogenase, beta subunit (frhB)
[Methanococcus jannaschii]
Length = 620
Score = 34.7 bits (78), Expect = 1.9
Identities = 19/55 (34%), Positives = 26/55 (46%)
Frame = -2
Query: 370 RCHCCVLLCPNGCCNSPNHPPGHPECLNWRQPWQRGHGDVNQQQLPRTSKRKYYL 206
RC C ++CPNG P ECL ++GHG + + PR S KY +
Sbjct: 17 RCGTCTIVCPNGILTFDERPKLIDECL------RKGHG-MCFEVCPRVSSAKYQI 64
>pir||E69135 coenzyme F420-reducing hydrogenase, beta subunit homolog -
Methanobacterium thermoautotrophicum (strain Delta H)
gb|AAB84786.1| (AE000813) coenzyme F420-reducing hydrogenase, beta subunit homolog
[Methanothermobacter thermautotrophicus]
Length = 689
Score = 34.3 bits (77), Expect = 2.5
Identities = 20/61 (32%), Positives = 27/61 (43%)
Frame = -2
Query: 370 RCHCCVLLCPNGCCNSPNHPPGHPECLNWRQPWQRGHGDVNQQQLPRTSKRKYYLGYSQ* 191
RC C ++CPN P ECL + GHG + + PR S KY +G +
Sbjct: 87 RCGTCAVICPNNILTFNGRPELTEECL------RNGHG-MCFEVCPRVSSGKYQIGIREN 139
Query: 190 F 188
F
Sbjct: 140 F 140
>ref|NP_110390.1| nucleosomal binding protein 1 [Homo sapiens]
gb|AAK14062.1|AF250329_1 (AF250329) nucleosomal binding protein 1 [Homo sapiens]
gb|AAK14063.1|AF250330_1 (AF250330) nucleosomal binding protein 1 [Homo sapiens]
gb|AAH05342.1|AAH05342 (BC005342) nucleosomal binding protein 1 [Homo sapiens]
Length = 282
Score = 34.3 bits (77), Expect = 2.5
Identities = 32/141 (22%), Positives = 64/141 (44%)
Frame = +3
Query: 819 DDVDPGGAKLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRS 998
D + GG K +A A +V + E + + + +++E G E + G E + +
Sbjct: 107 DATEKGGEKKEAV--AAEVKNEEEDQKEDEEDQNEEKGEAGKEDKDEKGEEDGKEDKNGN 164
Query: 999 KEAECSAERRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDL 1178
++ E + E+ + G +GN + ++ + +R +G +DG++ D
Sbjct: 165 EKGEDAKEKEDGKK----GEDGKGNGEDGKEKGEDEKEEEDRKETGDGKENEDGKEKGDK 220
Query: 1179 FKGVRAKEKDWEKENEVGQKD 1241
+G K K+ EKE E G++D
Sbjct: 221 KEGKDVKVKEDEKEREDGKED 241
Score = 32.3 bits (72), Expect = 9.4
Identities = 34/142 (23%), Positives = 58/142 (39%)
Frame = +3
Query: 849 DADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAERR 1028
DA E+ + E V ++V+ D+ E E E ++ G E E + ++
Sbjct: 107 DATEKGGE--KKEAVAAEVKNEEEDQKEDE--EDQNEEKGEAGKEDKDEKGEEDGKEDKN 162
Query: 1029 GNRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLFKGVRAKEKD 1208
GN +G + ++ DG++ G+ D E GED + KE
Sbjct: 163 GNE---------KGEDAK-------EKEDGKKGEDGKGNGEDGKEKGEDEKEEEDRKETG 206
Query: 1209 WEKENEVGQKDVERPVGKLVNL 1274
KENE G++ ++ GK V +
Sbjct: 207 DGKENEDGKEKGDKKEGKDVKV 228
>pir||T32758 hypothetical protein T12F5.4 - Caenorhabditis elegans
gb|AAB96746.1| (AF039718) contains similarity to trithorax-related proteins
[Caenorhabditis elegans]
gb|AAD49324.1|AF163019_1 (AF163019) trithorax-related protein LIN-59 [Caenorhabditis elegans]
Length = 1312
Score = 33.9 bits (76), Expect = 3.2
Identities = 20/61 (32%), Positives = 32/61 (51%), Gaps = 4/61 (6%)
Frame = +3
Query: 930 ESEGLESMHQVAAIHGT---EATSRSKEAECSAERRGNRLAMAGGSRSRGNTRRLGD-VV 1097
+ +G MHQ+ I T T+ S A S+ N +GG R +GN R+G+ +
Sbjct: 32 QQQGARQMHQMHPIQATLMCTPTTTSAAASTSSSGGSNSSGGSGGHRQQGNILRIGNSIK 91
Query: 1098 VGDRL 1112
+GD +
Sbjct: 92 IGDNI 96
>emb|CAB92250.1| (AL356595) putative ATP-binding membrane protein [Streptomyces
coelicolor A3(2)]
Length = 826
Score = 33.9 bits (76), Expect = 3.2
Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Frame = +3
Query: 819 DDVDPGGAKLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRS 998
DD G + D+RA+Q G +G D R RR D + G S + G SR
Sbjct: 33 DDRGRGDRENRGDDRAEQNGRGDGDHPDERGRRGDRDDGHGRGSRGR-----GDRRGSRD 87
Query: 999 KEAECSA-ERRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGED 1175
E A E +G+R GS+ R + R G R D S DG+DG D
Sbjct: 88 DREEWDAQEEQGDR--EGRGSQGRSDKR-------GPRDDRGGRDSRDSRAPGDGQDGRD 138
>gb|AAG09099.1|AC009323_10 (AC009323) Unknown protein [Arabidopsis thaliana]
Length = 522
Score = 33.9 bits (76), Expect = 3.2
Identities = 37/155 (23%), Positives = 72/155 (45%), Gaps = 3/155 (1%)
Frame = +3
Query: 822 DVDPGGAKLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSK 1001
D D G K +++ ++ SE DV++ D+ + LE+ I E + K
Sbjct: 352 DDDEGETKQKKNKKKEK--KSEKGEKDVKE---DKKKENPLETEVMSRDIKLEEPEAEKK 406
Query: 1002 EAECSAERRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLF 1181
E + + E++ +++ GG G ++ D + D + + +D E+ +D
Sbjct: 407 EEDDTEEKKKSKVE--GGESEEGKKKKKKDKKKNKKKDTKEPK-----MTEDEEEKKDDS 459
Query: 1182 KGVR---AKEKDWEKENEVGQKDVERPVGKLVNLMAKI 1286
K V+ +K K+ +K+ +V +K +GKL +AKI
Sbjct: 460 KDVKIEGSKAKEEKKDKDVKKKKGGNDIGKLKTKLAKI 497
>gb|AAG00554.1|AF286475_1 (AF286475) retinitis pigmentosa GTPase regulator-like protein
[Takifugu rubripes]
Length = 791
Score = 33.9 bits (76), Expect = 3.2
Identities = 29/128 (22%), Positives = 54/128 (41%)
Frame = +3
Query: 864 ADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAERRGNRLA 1043
+D + + +SDV ES SEG E + E S + E+E E++G R
Sbjct: 355 SDTLHPEDESQSDVEDEEEGESRSEGQEEEEEEE--EEEEERSSTAESESEDEKKGER-- 410
Query: 1044 MAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLFKGVRAKEKDWEKEN 1223
+ R G+ V + +G S R + E+GE+ ++E++ + ++
Sbjct: 411 -----KERDVEEEEGESEVEESEEGSDHESERKKASESEEEGEEEEADSLSEEEEGDSKS 465
Query: 1224 EVGQKDVE 1247
+ + D E
Sbjct: 466 DAEESDAE 473
>ref|NP_057214.1| RNA helicase [Homo sapiens]
gb|AAD43033.1| (AF106680) RNA helicase [Homo sapiens]
Length = 1031
Score = 33.5 bits (75), Expect = 4.2
Identities = 37/130 (28%), Positives = 56/130 (42%), Gaps = 1/130 (0%)
Frame = +3
Query: 852 ADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAERRG 1031
+D+R+ + GD RS R RR + S S + + SRS+E + S ERR
Sbjct: 28 SDKRSKR-GDDRRSRSRDRDRRRERSRSR--DKRRSRSRDRKRLRRSRSRERDRSRERRR 84
Query: 1032 NRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLFKGVRAK-EKD 1208
+R SRSR RR G + + R + E G+ + + K +K+
Sbjct: 85 SRSRDRRRSRSRSRGRRSRSSSPGSK---SKKAENRSRSKEKAEGGDSSKEKKKDKDDKE 141
Query: 1209 WEKENEVGQKD 1241
EKE + G D
Sbjct: 142 DEKEKDAGNFD 152
>emb|CAB75380.1| (AL139298) hypothetical protein SCC88.10c [Streptomyces coelicolor
A3(2)]
Length = 1340
Score = 33.5 bits (75), Expect = 4.2
Identities = 26/84 (30%), Positives = 37/84 (43%), Gaps = 15/84 (17%)
Frame = +3
Query: 840 AKLDADERADQVGDSEGVRSDVRKRRH---------------DESESEGLESMHQVAAIH 974
A+ DADE D+ D++G +RR D ++ EG + Q
Sbjct: 388 AEADADESGDEHDDADGYEESGSRRRRRRGGRRRRRGDSADGDLTDGEGEHTADQADQDG 447
Query: 975 GTEATSRSKEAECSAERRGNRLAMAGGSRSRGNTRRLGD 1091
A ++AE S E G + R R RR GD
Sbjct: 448 SDTAEQADEDAEESEEAAGESGGSSSSRRRRRRRRRAGD 486
>pir||A57514 RNA helicase HEL117 - rat
gb|AAC52210.1| (U25746) RNA helicase [Rattus norvegicus]
Length = 1032
Score = 33.5 bits (75), Expect = 4.2
Identities = 37/130 (28%), Positives = 56/130 (42%), Gaps = 1/130 (0%)
Frame = +3
Query: 852 ADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAERRG 1031
+D+R+ + GD RS R RR + S S + + SRS+E + S ERR
Sbjct: 28 SDKRSKR-GDDRRSRSRDRDRRRERSRSR--DKRRSRSRDRKRLRRSRSRERDRSRERRR 84
Query: 1032 NRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLFKGVRAK-EKD 1208
+R SRSR RR G + + R + E G+ + + K +K+
Sbjct: 85 SRSRDRRRSRSRSRGRRSRSSSPGSK---SKKAENRSRSKEKAEGGDSSKEKKKDKDDKE 141
Query: 1209 WEKENEVGQKD 1241
EKE + G D
Sbjct: 142 DEKEKDAGNFD 152
>gb|AAK52958.1|AF367243_1 (AF367243) bile salt export pump [Raja erinacea]
Length = 1348
Score = 33.5 bits (75), Expect = 4.2
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 200 ISKIVLPFGSSWQLLLVYIPMSPLPGL-SPVEALRVARRMIWGITTTIRAKKDATVTAMI 376
+S ++ F + W+L LV I +SPL GL + + AL VAR + G+ AK A ++
Sbjct: 246 VSGFLMGFVNGWKLTLVIIAVSPLIGLGAALMALSVAR--LTGLGLKAYAKAGAVADEVL 303
Query: 377 LISSITIRFQADLEKLDQASRTV 445
F + +++D+ R +
Sbjct: 304 SSIRTVAAFSGEKKEVDRYDRNL 326
>gb|AAK53006.1|AF375422_1 (AF375422) AT4g36980/C7A10_380 [Arabidopsis thaliana]
Length = 235
Score = 33.1 bits (74), Expect = 5.5
Identities = 32/139 (23%), Positives = 56/139 (40%)
Frame = +3
Query: 843 KLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRSKEAECSAE 1022
K + +E ++ + E R ++ RR S+ EGL+ +HQ EA+ +A
Sbjct: 102 KTEEEEELEEFVNFERYRDLIKHRRRGFSDEEGLQHVHQ------------ELEAKLAAP 149
Query: 1023 RRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGERCVSGRLLIFDDGEDGEDLFKGVRAKE 1202
G R A ++G ++G G+ D + DD ED ED +E
Sbjct: 150 FLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNS--LDADEDDVDDDEDDED-----EEEE 202
Query: 1203 KDWEKENEVGQKDVERPVG 1259
D ++ G + + + G
Sbjct: 203 FDSNDSDDEGMETIAKQFG 221
>pir||B29795 circumsporozoite protein - malaria parasite (Plasmodium falciparum)
(strain LE5) (fragments)
Length = 189
Score = 33.1 bits (74), Expect = 5.5
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Frame = +1
Query: 304 GQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLP-------GRLGEAGPSVTNGSVAPTA 462
G+ DD N N G+EG++ D D + E N L + + P N + P
Sbjct: 56 GENDDGNNNNGDNGREGKDEDKRDGNNEDNEKLRKPKHKKLKQPADGNPDPANPNANPNK 115
Query: 463 DNDGLDAAIE*TVEGNDGVGLGGKERGLNANENNIGRNLDGDLEEQSQDH 612
+N G +G++ + NAN NN +N + EE S H
Sbjct: 116 NNQG-------NGQGHNMPNDPNRNVDENANGNNAVKN--NNNEEPSDQH 156
>dbj|BAA85428.1| (AP000616) similar to MADS-box protein AGL14 (U20184) [Oryza sativa]
Length = 288
Score = 32.7 bits (73), Expect = 7.2
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Frame = +3
Query: 939 GLESMHQVAAIHGTEATSRSKEAECSAERRGNRLAMAGGSRSRGNTRRL---GDVVVGDR 1109
G +SM + AA+ T + G ++ G R RG RR G VVG R
Sbjct: 148 GWQSMGRAAALQATAPDTDD----------GGIVSGGRGGRRRGGQRRQDAGGGGVVGGR 197
Query: 1110 LDGERC-------VSGRLLIFDDGEDGEDLFKGVR--AKEKDWEKENEVG 1232
G R + G ++ +DGEDG GVR A E W E + G
Sbjct: 198 WGGRRHSKRRRQDIRGGGVVVNDGEDGGAAGDGVRMSAVEAWWADEGKGG 247
>ref|NP_005446.1| zinc finger protein 265; zinc-finger, splicing; zinc-finger protein
265 [Homo sapiens]
gb|AAD09747.1| (AF065392) ZIS2 [Homo sapiens]
emb|CAB66879.1| (AL136945) hypothetical protein [Homo sapiens]
Length = 311
Score = 32.3 bits (72), Expect = 9.4
Identities = 29/102 (28%), Positives = 44/102 (42%)
Frame = +3
Query: 819 DDVDPGGAKLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRS 998
DD D LDA E D S +S+ R R +S S S + ++ + + SRS
Sbjct: 176 DDADLSKYNLDASEEED----SNKKKSNRRSR--SKSRSSHSRSSSRSSSPSSSRSRSRS 229
Query: 999 KEAECSAERRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGER 1124
+ S+ + +R + SRSRG+ R G L E+
Sbjct: 230 RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSTGALLPHEK 271
>sp|O95218|Z265_HUMAN ZINC FINGER PROTEIN 265 (ZINC FINGER, SPLICING)
gb|AAD09746.1| (AF065391) ZIS1 [Homo sapiens]
Length = 337
Score = 32.3 bits (72), Expect = 9.4
Identities = 29/102 (28%), Positives = 44/102 (42%)
Frame = +3
Query: 819 DDVDPGGAKLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSRS 998
DD D LDA E D S +S+ R R +S S S + ++ + + SRS
Sbjct: 176 DDADLSKYNLDASEEED----SNKKKSNRRSR--SKSRSSHSRSSSRSSSPSSSRSRSRS 229
Query: 999 KEAECSAERRGNRLAMAGGSRSRGNTRRLGDVVVGDRLDGER 1124
+ S+ + +R + SRSRG+ R G L E+
Sbjct: 230 RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSTGALLPHEK 271
>ref|NP_003438.1| zinc finger protein 165 [Homo sapiens]
ref|XP_004449.1| zinc finger protein 165 [Homo sapiens]
sp|P49910|Z165_HUMAN ZINC FINGER PROTEIN 165 (LD65)
pir||S52411 ZNF165 protein - human
emb|CAA59268.1| (X84801) ZNF165 [Homo sapiens]
gb|AAC51658.1| (U78722) zinc finger protein 165 [Homo sapiens]
gb|AAD04755.1| (U88086) zinc finger protein [Homo sapiens]
emb|CAB92080.1| (AL121944) dJ313I6.6 (zinc finger protein 165) [Homo sapiens]
Length = 485
Score = 32.3 bits (72), Expect = 9.4
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 1071 NTRRLGDVVVGDRLDGERCVSGRL--LIFDDGEDGEDLFKGVRAKEKDWEKENEVGQK 1238
N+R + + + ++++ +R +SGR+ I + + +D+ K ++ WEKE+ Q+
Sbjct: 189 NSRSMPKLEIFEKIESQRIISGRISGYISEASGESQDICKSAGRVKRQWEKESGESQR 246
>gb|AAD08945.1| (AC005724) SNF2/RAD54 family (RAD26 subfamily) transcription-repair
coupling factor [Arabidopsis thaliana]
Length = 1187
Score = 32.3 bits (72), Expect = 9.4
Identities = 36/141 (25%), Positives = 68/141 (47%), Gaps = 17/141 (12%)
Frame = +3
Query: 843 KLDADERADQVGDSEGVRSDVRKRRHDESESEGLESMHQVAAIHGTEATSR-----SKEA 1007
K + D A V + + + ++ ++ DES+ +GL H +A+ AT R ++
Sbjct: 71 KFEIDAVASTVENVDEIAAEKGLKKDDESDLQGL---HSGSALQHALATDRLRSLKKRKI 127
Query: 1008 ECSAERRGNRLAMAGGSRSRGN------------TRRLGDVVVGDRLDGERCVSGRLLIF 1151
+ E G A S GN R+L ++ R DG++ +++ F
Sbjct: 128 QLEKELTGLHGQSASSSADHGNLLRDLVKEKPSLKRKLKEIRKPSRRDGKKV---KVVSF 184
Query: 1152 DDGEDGEDLFKGVRAKEKDWEKENEVGQKDVERPVGKL 1265
+ D + +F G A + E++ E+ +K + P KL
Sbjct: 185 REDTDFDAVFDGASAGFVETERD-ELVRKGILTPFHKL 221
>pir||T28899 hypothetical protein T17H7.1 - Caenorhabditis elegans
gb|AAC48170.1| (U42841) short region of weak similarity to collagen
[Caenorhabditis elegans]
Length = 682
Score = 32.3 bits (72), Expect = 9.4
Identities = 17/51 (33%), Positives = 19/51 (36%)
Frame = +1
Query: 292 GTQGGQEDDLGNYNNH*GKEGRNSDSDDLDFEHNNTLPGRLGEAGPSVTNG 444
G G +DD G GR DFE + PGR G GP G
Sbjct: 326 GPDFGPQDDFPGRRGSGGPGGRGGRGQGPDFEPQDDFPGRRGSGGPGRRGG 376
Database: nr
Posted date: Jun 30, 2001 11:40 PM
Number of letters in database: 222,175,239
Number of sequences in database: 705,144
Lambda K H
0.318 0.135 0.00
Gapped
Lambda K H
0.267 0.0410 4.94e-324
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,545,644
Number of Sequences: 705144
Number of extensions: 10794236
Number of successful extensions: 38761
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 35022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38587
length of database: 222,175,239
effective HSP length: 122
effective length of database: 136,147,671
effective search space used: 46017912798
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)