(Linear) MAP of: ./Fgr_contig0001.seq check: 1442 from: 1 to: 735 Fgr_contig0001 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI BspMI SacII | | | GCACGAGGACTAAATACACCTGCGATTCATATATACAATTACCCCCGCGGTGATCGACAAAAAAATGGCCTTCAACCTTCCTCCTTTCCTGGCGCGTCTT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCTGATTTATGTGGACGCTAAGTATATATGTTAATGGGGGCGCCACTAGCTGTTTTTTTACCGGAAGTTGGAAGGAGGAAAGGACCGCGCAGAA a A R G L N T P A I H I Y N Y P R G D R Q K N G L Q P S S F P G A S C - b H E D * I H L R F I Y T I T P A V I D K K M A F N L P P F L A R L - c T R T K Y T C D S Y I Q L P P R * S T K K W P S T F L L S W R V L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S S * I C R R N M Y V I V G A T I S L F I A K L R G G K R A R R - e R P S F V G A I * I Y L * G R P S R C F F P R * G E E K G P A D - f V L V L Y V Q S E Y I C N G G R H D V F F H G E V K R R E Q R T K - Eco47III Bpu1102I | BspGI BclI EciI BsgI | | | | | | | | GCCCGCCCCTTTACACAGTCCAGCCGACTCTCTATTGCTCCTGATCAATCCGCCGCATCAGTCATTCCCGAGGGCGCTCAGCGCTGCACCGTGGCCGCAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGGCGGGGAAATGTGTCAGGTCGGCTGAGAGATAACGAGGACTAGTTAGGCGGCGTAGTCAGTAAGGGCTCCCGCGAGTCGCGACGTGGCACCGGCGTC a P P L Y T V Q P T L Y C S * S I R R I S H S R G R S A L H R G R R - b A R P F T Q S S R L S I A P D Q S A A S V I P E G A Q R C T V A A G - c P A P L H S P A D S L L L L I N P P H Q S F P R A L S A A P W P Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A R G K V C D L R S E I A G S * D A A D T M G S P A * R Q V T A A - e Q G G R * V T W G V R * Q E Q D I R R M L * E R P R E A S C R P R L - f G A G K C L G A S E R N S R I L G G C * D N G L A S L A A G H G C - PshAI DrdI | | GCTGCTTCTGGGGCACCGAGCACCTCTACCGCAGGCACTTTGCTGACAAGGGTCTTATCGACGCAAAGGTCGGCTACATTGGTGGTGATCTTGAGAACCC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGACGAAGACCCCGTGGCTCGTGGAGATGGCGTCCGTGAAACGACTGTTCCCAGAATAGCTGCGTTTCCAGCCGATGTAACCACCACTAGAACTCTTGGG a L L L G H R A P L P Q A L C * Q G S Y R R K G R L H W W * S * E P - b C F W G T E H L Y R R H F A D K G L I D A K V G Y I G G D L E N P - c A A S G A P S T S T A G T L L T R V L S T Q R S A T L V V I L R T L - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d P Q K Q P V S C R * R L C K A S L P R I S A F T P * M P P S R S F G - e S S R P C R A G R G C A S Q Q C P D * R R L P R S C Q H H D Q S G - f A A E P A G L V E V A P V K S V L T K D V C L D A V N T T I K L V - AceIII Bce83I BspGI Eco57I PshAI BseRI EcoRI | | | | | | | | TAGCTATCGCGCCGTCTGCGGCGGCAAGACTGGACACGCTGAAGCCGCGCAAATCATTTTCGACCCGACAAAGGTCACATACGCGCAGCTCCTCGAATTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 ATCGATAGCGCGGCAGACGCCGCCGTTCTGACCTGTGCGACTTCGGCGCGTTTAGTAAAAGCTGGGCTGTTTCCAGTGTATGCGCGTCGAGGAGCTTAAG a * L S R R L R R Q D W T R * S R A N H F R P D K G H I R A A P R I L - b S Y R A V C G G K T G H A E A A Q I I F D P T K V T Y A Q L L E F - c A I A P S A A A R L D T L K P R K S F S T R Q R S H T R S S S N S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d L * R A T Q P P L V P C A S A A C I M K S G V F T V Y A C S R S N - e * S D R R R R R C S Q V R Q L R A F * K R G S L P * M R A A G R I - f R A I A G D A A A L S S V S F G R L D N E V R C L D C V R L E E F E - ApaI BfiI BsrBI | | | TTCTACAAGACGCATGACCCCACGACACTCAACCAGCAGGGCCCCGATACCGGCCCCCAGTACCGCTCCGCTATCTACTTCCACAACCCCGAGCAGGAGA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 AAGATGTTCTGCGTACTGGGGTGCTGTGAGTTGGTCGTCCCGGGGCTATGGCCGGGGGTCATGGCGAGGCGATAGATGAAGGTGTTGGGGCTCGTCCTCT a L Q D A * P H D T Q P A G P R Y R P P V P L R Y L L P Q P R A G E - b F Y K T H D P T T L N Q Q G P D T G P Q Y R S A I Y F H N P E Q E K - c S T R R M T P R H S T S R A P I P A P S T A P L S T S T T P S R R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d K * L V C S G V V S L W C P G S V P G W Y R E A I * K W L G S C S - e R R C S A H G W S V * G A P G R Y R G G T G S R * R S G C G R A P S - f E V L R M V G R C E V L L A G I G A G L V A G S D V E V V G L L L - BssHII | AGATTGCGCGCGAAGTGACAGAGAAGGCCAACAAGCAGTGGTGGAAGGGCGGCATCGTGACTGAGATTGCGCCTGCTGGCAAGTGGTGGACTGCCGAGGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TCTAACGCGCGCTTCACTGTCTCTTCCGGTTGTTCGTCACCACCTTCCCGCCGTAGCACTGACTCTAACGCGGACGACCGTTCACCACCTGACGGCTCCT a D C A R S D R E G Q Q A V V E G R H R D * D C A C W Q V V D C R G - b I A R E V T E K A N K Q W W K G G I V T E I A P A G K W W T A E E - c R L R A K * Q R R P T S S G G R A A S * L R L R L L A S G G L P R S - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d F I A R S T V S F A L L C H H F P P M T V S I A G A P L H H V A S S - e S Q A R L S L S P W C A T T S P R C R S Q S Q A Q Q C T T S Q R P - f L N R A F H C L L G V L L P P L A A D H S L N R R S A L P P S G L - RcaI BseRI AceIII BsaI | BseRI NruI BpmI | | | | | | | GTACCACCAGCTCTACCTACACAACAACCCCTCTGGTTATGAGTGCCCTAGTCACTTCATGAGACCATTCCCTCCTCTGGAGTGAGTCGCGACAGATTAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CATGGTGGTCGAGATGGATGTGTTGTTGGGGAGACCAATACTCACGGGATCAGTGAAGTACTCTGGTAAGGGAGGAGACCTCACTCAGCGCTGTCTAATC a V P P A L P T Q Q P L W L * V P * S L H E T I P S S G V S R D R L A - b Y H Q L Y L H N N P S G Y E C P S H F M R P F P P L E * V A T D * - c T T S S T Y T T T P L V M S A L V T S * D H S L L W S E S R Q I S - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d Y W W S * R C L L G E P * S H G L * K M L G N G G R S H T A V S * - e T G G A R G V C C G R Q N H T G * D S * S V M G E E P T L R S L N - f L V V L E V * V V V G R T I L A R T V E H S W E R R Q L S D R C I L - CTTCTGGGTTCTGATTGAACAGAAGTCACAAATGA 701 ---------+---------+---------+----- 735 GAAGACCCAAGACTAACTTGTCTTCAGTGTTTACT a S G F * L N R S H K * - b L L G S D * T E V T N - c F W V L I E Q K S Q M - 701 ---------+---------+---------+----- 735 d S R P E S Q V S T V F S - e A E P N Q N F L L * L H - f K Q T R I S C F D C I - Enzymes that do cut: AceIII ApaI Bce83I BclI BfiI BpmI Bpu1102I BsaI BseRI BsgI BspGI BspMI BsrBI BssHII BssSI DrdI EciI Eco47III Eco57I EcoRI NruI PshAI RcaI SacII Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BglI BglII BplI Bpu10I BsaBI BsaXI BsbI BsiWI BsmI BsmBI BspEI BspLU11I BsrDI BsrGI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EagI EarI EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI Psp1406I PstI PvuI PvuII RsrII SacI SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI XmnI