(Linear) MAP of: ./Fgr_contig0005.seq check: 8743 from: 1 to: 1029 Fgr_contig0005 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. DraI BpmI | | GGCCCCCCCCTCCGAGTTTTTTTTTTTTTTTTTTTTTTTTGACTGATTTAAACACTTGATTGCCGAAGAAAACCTAAATACTAAAGTAATTAAGACGATA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCGGGGGGGGAGGCTCAAAAAAAAAAAAAAAAAAAAAAAACTGACTAAATTTGTGAACTAACGGCTTCTTTTGGATTTATGATTTCATTAATTCTGCTAT a G P P L R V F F F F F F F * L I * T L D C R R K P K Y * S N * D D T - b A P P S E F F F F F F F F D * F K H L I A E E N L N T K V I K T I - c P P P P S F F F F F F F L T D L N T * L P K K T * I L K * L R R Y - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d A G G E S N K K K K K K K S Q N L C K I A S S F R F V L T I L V I - e G G R R T K K K K K K K Q S I * V S S Q R L F G L Y * L L * S S - f G G G G L K K K K K K K K V S K F V Q N G F F V * I S F Y N L R Y - BsrDI NspV | | CCTCTCTCCAGTATCGCAATGTCAGCTACCTCTCATAAACCTTTCATTTTCGAACTCATGTTCACATTCTTCTTCCATGCCAAATTAGATCAATACCATC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GGAGAGAGGTCATAGCGTTACAGTCGATGGAGAGTATTTGGAAAGTAAAAGCTTGAGTACAAGTGTAAGAAGAAGGTACGGTTTAATCTAGTTATGGTAG a S L Q Y R N V S Y L S * T F H F R T H V H I L L P C Q I R S I P S - b P L S S I A M S A T S H K P F I F E L M F T F F F H A K L D Q Y H L - c L S P V S Q C Q L P L I N L S F S N S C S H S S S M P N * I N T I - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G R E L I A I D A V E * L G K M K S S M N V N K K W A L N S * Y W - e V E R W Y R L T L * R E Y V K * K R V * T * M R R G H W I L D I G D - f R E G T D C H * S G R M F R E N E F E H E C E E E M G F * I L V M - Eco57I BssSI PvuII Eco57I XcmI | | | | | TATAGGTATGGTCACGAGATTCTTCAGCTGAAGTAGCAGGCTCCCGAGAGTTCCCAGACCAATGCTGTCCATCTTGGTGCTGGTGCGAGGGATCGTTGTT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 ATATCCATACCAGTGCTCTAAGAAGTCGACTTCATCGTCCGAGGGCTCTCAAGGGTCTGGTTACGACAGGTAGAACCACGACCACGCTCCCTAGCAACAA a I G M V T R F F S * S S R L P R V P R P M L S I L V L V R G I V V - b * V W S R D S S A E V A G S R E F P D Q C C P S W C W C E G S L L - c Y R Y G H E I L Q L K * Q A P E S S Q T N A V H L G A G A R D R C C - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d R Y T H D R S E E A S T A P E R S N G S W H Q G D Q H Q H S P D N N - e I P I T V L N K L Q L L L S G L T G L G I S D M K T S T R P I T T - f * L Y P * S I R * S F Y C A G S L E W V L A T W R P A P A L S R Q - BglI NcoI FspI BsmI DrdII Pfl1108I EciI | | | | | | | GTAGCCTGCTTGGCCCCCATGGTCTTGACGGCCATTGTGCGCAAACGCATTCTGGTTCTGTTCGTAGGCGGATGGCTGTGAAAGCCATGAATTTCCATAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CATCGGACGAACCGGGGGTACCAGAACTGCCGGTAACACGCGTTTGCGTAAGACCAAGACAAGCATCCGCCTACCGACACTTTCGGTACTTAAAGGTATT a V A C L A P M V L T A I V R K R I L V L F V G G W L * K P * I S I T - b * P A W P P W S * R P L C A N A F W F C S * A D G C E S H E F P * - c S L L G P H G L D G H C A Q T H S G S V R R R M A V K A M N F H N - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d Y G A Q G G H D Q R G N H A F A N Q N Q E Y A S P Q S L W S N G Y - e T A Q K A G M T K V A M T R L R M R T R N T P P H S H F G H I E M - f Q L R S P G W P R S P W Q A C V C E P E T R L R I A T F A M F K W L - BsrDI XcmI DrdII AceIII BsiWI NcoI BsaI | | | | | | | CCATTGCTTGCGTGGTTCTGGTAGCCCGTCCCGTACGAGCTGTAATCTGCTGTGCCTTCCATGGAAAAGTCGGTAGAGACCGAATCCTGTGGGTGCAGCG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGTAACGAACGCACCAAGACCATCGGGCAGGGCATGCTCGACATTAGACGACACGGAAGGTACCTTTTCAGCCATCTCTGGCTTAGGACACCCACGTCGC a I A C V V L V A R P V R A V I C C A F H G K V G R D R I L W V Q R - b P L L A W F W * P V P Y E L * S A V P S M E K S V E T E S C G C S D - c H C L R G S G S P S R T S C N L L C L P W K S R * R P N P V G A A - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d G N S A H N Q Y G T G Y S S Y D A T G E M S F D T S V S D Q P H L - e V M A Q T T R T A R G T R A T I Q Q A K W P F T P L S R I R H T C R - f W Q K R P E P L G D R V L Q L R S H R G H F L R Y L G F G T P A A - Bpu1102I BsgI BglI ApaI | BpmI BamHI | | | | | | ATGGTTGCTGTCGTTGAGCCTCTCGGGCCCACCGCTGAGCAGCTTGGTTATACGGCCCCTCGTATGAACTTTCTTCTCCAGTGGGATCCCAAATGGGAAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TACCAACGACAGCAACTCGGAGAGCCCGGGTGGCGACTCGTCGAACCAATATGCCGGGGAGCATACTTGAAAGAAGAGGTCACCCTAGGGTTTACCCTTC a W L L S L S L S G P P L S S L V I R P L V * T F F S S G I P N G K - b G C C R * A S R A H R * A A W L Y G P S Y E L S S P V G S Q M G R - c M V A V V E P L G P T A E Q L G Y T A P R M N F L L Q W D P K W E D - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S P Q Q R Q A E R A W R Q A A Q N Y P G E Y S S E E G T P D W I P L - e H N S D N L R E P G G S L L K T I R G R T H V K K E L P I G F P F - f I T A T T S G R P G V A S C S P * V A G R I F K R R W H S G L H S - BbsI Bpu1102I BpmI DrdI | | | | ACCGTCTGGAGGCTGAGCTTCTCCCGATGGCTGGCCGTGGCTGTATGAAGCTATGTTTCCATTGATACCACAAAGAGCCCAGGCAAAGACAGCAACGTCT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TGGCAGACCTCCGACTCGAAGAGGGCTACCGACCGGCACCGACATACTTCGATACAAAGGTAACTATGGTGTTTCTCGGGTCCGTTTCTGTCGTTGCAGA a T V W R L S F S R W L A V A V * S Y V S I D T T K S P G K D S N V S - b P S G G * A S P D G W P W L Y E A M F P L I P Q R A Q A K T A T S - c R L E A E L L P M A G R G C M K L C F H * Y H K E P R Q R Q Q R L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d G D P P Q A E G S P Q G H S Y S A I N G N I G C L A W A F V A V D - e V T Q L S L K E R H S A T A T H L * T E M S V V F L G P L S L L T - f S R R S A S S R G I A P R P Q I F S H K W Q Y W L S G L C L C C R R - AceIII NcoI ApaBI BsmBI| BpmI | EcoRI FspI NdeI | BglI || | | | | | | | CTAATGGACTGCATGAGCTGGTCCATGGGAGGGCCTCCAGTAGCCTGAATTCCGCTGCGCAGCGGCATATGCTGCGGAGCCAATGGGGCCTGGAAATTGT 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GATTACCTGACGTACTCGACCAGGTACCCTCCCGGAGGTCATCGGACTTAAGGCGACGCGTCGCCGTATACGACGCCTCGGTTACCCCGGACCTTTAACA a N G L H E L V H G R A S S S L N S A A Q R H M L R S Q W G L E I V - b L M D C M S W S M G G P P V A * I P L R S G I C C G A N G A W K L W - c * W T A * A G P W E G L Q * P E F R C A A A Y A A E P M G P G N C - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d R I S Q M L Q D M P P G G T A Q I G S R L P M H Q P A L P A Q F N - e E L P S C S S T W P L A E L L R F E A A C R C I S R L W H P R S I T - f * H V A H A P G H S P R W Y G S N R Q A A A Y A A S G I P G P F Q - BcgI BsaI BcgI BglI PvuI | | | | | GGAAGGTCTCATGCGAATACTGTGCATGGAAGGGTTGTTGCGCCCAGGGGGCAGCGAAAACGCCACGATCGTTGATAGAAGGGACTTGAGGATTGTGGGC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CCTTCCAGAGTACGCTTATGACACGTACCTTCCCAACAACGCGGGTCCCCCGTCGCTTTTGCGGTGCTAGCAACTATCTTCCCTGAACTCCTAACACCCG a E G L M R I L C M E G L L R P G G S E N A T I V D R R D L R I V G - b K V S C E Y C A W K G C C A Q G A A K T P R S L I E G T * G L W A - c G R S H A N T V H G R V V A P R G Q R K R H D R * * K G L E D C G H - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d H F T E H S Y Q A H F P Q Q A W P A A F V G R D N I S P V Q P N H A - e S P R M R I S H M S P N N R G P P L S F A V I T S L L S K L I T P - f P L D * A F V T C P L T T A G L P C R F R W S R Q Y F P S S S Q P - Bce83I DrdI PvuII | | | ATCGGGAATCTGGGGTCGTGCTCGACGAAGGATAACGACAAGGCCGTCAGAAGTGCAAGACACAACGGCCTCCAATTCAACAGAAGGTGCCAGCTGTGGC 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 TAGCCCTTAGACCCCAGCACGAGCTGCTTCCTATTGCTGTTCCGGCAGTCTTCACGTTCTGTGTTGCCGGAGGTTAAGTTGTCTTCCACGGTCGACACCG a I G N L G S C S T K D N D K A V R S A R H N G L Q F N R R C Q L W R - b S G I W G R A R R R I T T R P S E V Q D T T A S N S T E G A S C G - c R E S G V V L D E G * R Q G R Q K C K T Q R P P I Q Q K V P A V A - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d D P I Q P R A R R L I V V L G D S T C S V V A E L E V S P A L Q P - e M P F R P D H E V F S L S L A T L L A L C L P R W N L L L H W S H - f C R S D P T T S S S P Y R C P R * F H L V C R G G I * C F T G A T A - BspGI BssSI | | GCTGGACGACTGCGTTCCCTGCCTCGTGC 1001 ---------+---------+--------- 1029 CGACCTGCTGACGCAAGGGACGGAGCACG a W T T A F P A S C - b A G R L R S L P R - c L D D C V P C L V - 1001 ---------+---------+--------- 1029 d A P R S R E R G R A - e R Q V V A N G A E H - f S S S Q T G Q R T - Enzymes that do cut: AceIII ApaI ApaBI BamHI BbsI Bce83I BcgI BglI BpmI Bpu1102I BsaI BsgI BsiWI BsmI BsmBI BspGI BsrDI BssSI DraI DrdI DrdII EciI Eco57I EcoRI FspI NcoI NdeI NspV Pfl1108I PvuI PvuII XcmI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaLI AscI AvrII BclI BfiI BglII BplI Bpu10I BsaBI BsaXI BsbI BseRI BspEI BspLU11I BspMI BsrBI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraIII EagI EarI Eco47III EcoNI EcoRV FseI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NgoAIV NheI NotI NruI NsiI PacI PflMI PinAI PmeI PmlI PshAI Psp1406I PstI RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XhoI XmnI