(Linear) MAP of: ./Fgr_contig0006.seq check: 8601 from: 1 to: 617 Fgr_contig0006 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BamHI PshAI BssSI | BsbI HindIII EagI | | | | | | | GCACGAGGATCCAATCTCTACAACACCGCTACTCTACTCTCCACCAACCAGCCAATACCATCACCATGTCTGCCCCCCAGAGCGAAGCTTTCAAGACGGC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCTAGGTTAGAGATGTTGTGGCGATGAGATGAGAGGTGGTTGGTCGGTTATGGTAGTGGTACAGACGGGGGGTCTCGCTTCGAAAGTTCTGCCG a A R G S N L Y N T A T L L S T N Q P I P S P C L P P R A K L S R R P - b H E D P I S T T P L L Y S P P T S Q Y H H H V C P P E R S F Q D G - c T R I Q S L Q H R Y S T L H Q P A N T I T M S A P Q S E A F K T A - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P D L R * L V A V R S E V L W G I G D G H R G G L A F S E L R - e V L I W D R C C R * E V R W W G A L V M V M D A G W L S A K L V A - f C S S G I E V V G S S * E G G V L W Y W * W T Q G G S R L K * S P - XhoI BplI BseRI SacI | SacI BbsI | | | | | CGTCGAGGACTCCAAGAAGCTCACCTCCAAGCCTGGTCCCACCGAGCTCCTCGAGCTCTACTCTCTCTACAAGGTCGGTAACGGTGAAGACTTCACCAAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GCAGCTCCTGAGGTTCTTCGAGTGGAGGTTCGGACCAGGGTGGCTCGAGGAGCTCGAGATGAGAGAGATGTTCCAGCCATTGCCACTTCTGAAGTGGTTC a S R T P R S S P P S L V P P S S S S S T L S T R S V T V K T S P R - b R R G L Q E A H L Q A W S H R A P R A L L S L Q G R * R * R L H Q G - c V E D S K K L T S K P G P T E L L E L Y S L Y K V G N G E D F T K - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d G D L V G L L E G G L R T G G L E E L E V R E V L D T V T F V E G L - e T S S E L F S V E L G P G V S S R S S * E R * L T P L P S S K V L - f R R P S W S A * R W A Q D W R A G R A R S E R C P R Y R H L S * W - BglI SfiI Bpu10I | Bce83I SphI Bsu36I BsrBI| | | | | || | GCTGAGAAGCCCGGCATGCTCGACCTCAAGGGCAAGGCCAAGTACAACGCCTGGAAGAAGGTCGCCGAGGATGACAAGCTCACTCCTGAGGCCGCTCAGG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CGACTCTTCGGGCCGTACGAGCTGGAGTTCCCGTTCCGGTTCATGTTGCGGACCTTCTTCCAGCGGCTCCTACTGTTCGAGTGAGGACTCCGGCGAGTCC a L R S P A C S T S R A R P S T T P G R R S P R M T S S L L R P L R - b * E A R H A R P Q G Q G Q V Q R L E E G R R G * Q A H S * G R S G - c A E K P G M L D L K G K A K Y N A W K K V A E D D K L T P E A A Q A - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S L L G A H E V E L A L G L V V G P L L D G L I V L E S R L G S L - e A S F G P M S S R L P L A L Y L A Q F F T A S S S L S V G S A A * - f P Q S A R C A R G * P C P W T C R R S S P R R P H C A * E Q P R E P - Bce83I Pfl1108I AflII | | | CCAAGTACGTTGAGCACGTCGAGAAGCTCAAGAAGTCCTGCGGCTACGACGCCAACAAGGTCCCCGAGACTGTTGGCGCTTAAGCGTGCGACTTTTTTAT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGTTCATGCAACTCGTGCAGCTCTTCGAGTTCTTCAGGACGCCGATGCTGCGGTTGTTCCAGGGGCTCTGACAACCGCGAATTCGCACGCTGAAAAAATA a P S T L S T S R S S R S P A A T T P T R S P R L L A L K R A T F L S - b Q V R * A R R E A Q E V L R L R R Q Q G P R D C W R L S V R L F Y - c K Y V E H V E K L K K S C G Y D A N K V P E T V G A * A C D F F I - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G L V N L V D L L E L L G A A V V G V L D G L S N A S L R A V K K - e A L Y T S C T S F S L F D Q P * S A L L T G S V T P A * A H S K K I - f W T R Q A R R S A * S T R R S R R W C P G R S Q Q R K L T R S K * - Pfl1108I VspI | | CCTCTACGAAATAGATAAACTCTCAACGATGAAACGAAATTAATTCAAAAGAGTTGGAATGACGAAATATATATGGACCCTACAAATGTCGGACCAAGTT 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GGAGATGCTTTATCTATTTGAGAGTTGCTACTTTGCTTTAATTAAGTTTTCTCAACCTTACTGCTTTATATATACCTGGGATGTTTACAGCCTGGTTCAA a S T K * I N S Q R * N E I N S K E L E * R N I Y G P Y K C R T K L - b P L R N R * T L N D E T K L I Q K S W N D E I Y M D P T N V G P S * - c L Y E I D K L S T M K R N * F K R V G M T K Y I W T L Q M S D Q V - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d D E V F Y I F E * R H F S I L E F S N S H R F I Y P G * L H R V L N - e R * S I S L S E V I F R F * N L L T P I V F Y I H V R C I D S W T - f G R R F L Y V R L S S V F N I * F L Q F S S I Y I S G V F T P G L - AAATGGGGTGAAGCCCTTTGGGGTTTCCATCCTCCGCTGCCGATAGCGTACATTATACTTAGCTGAGAAATCATACCCTTTCGTTTTGCGCCAAAAAAAA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTTACCCCACTTCGGGAAACCCCAAAGGTAGGAGGCGACGGCTATCGCATGTAATATGAATCGACTCTTTAGTATGGGAAAGCAAAACGCGGTTTTTTTT a N G V K P F G V S I L R C R * R T L Y L A E K S Y P F V L R Q K K - b M G * S P L G F P S S A A D S V H Y T * L R N H T L S F C A K K K - c K W G E A L W G F H P P L P I A Y I I L S * E I I P F R F A P K K K - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d F P T F G K P T E M R R Q R Y R V N Y K A S F D Y G K T K R W F F - e L H P S A R Q P K W G G S G I A Y M I S L Q S I M G K R K A G F F - f * I P H L G K P N G D E A A S L T C * V * S L F * V R E N Q A L F F - XhoI | AAAAAAAAAAACTCGAG 601 ---------+------- 617 TTTTTTTTTTTGAGCTC a K K K N S - b K K K T R - c K K K L E - 601 ---------+------- 617 d F F F F E L - e F F F F S S - f F F F V R - Enzymes that do cut: AflII BamHI BbsI Bce83I BglI BplI Bpu10I BsbI BseRI BsrBI BssSI Bsu36I EagI HindIII Pfl1108I PshAI SacI SfiI SphI VspI XhoI Enzymes that do not cut: AatII AceIII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BcgI BclI BfiI BglII BpmI Bpu1102I BsaI BsaBI BsaXI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstEII BstXI ClaI DraI DraIII DrdI DrdII EarI EciI Eco47III Eco57I EcoNI EcoRI EcoRV FseI FspI HgiEII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI Psp1406I PstI PvuI PvuII RcaI RsrII SacII SalI SanDI SapI ScaI SexAI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XmnI