(Linear) MAP of: ./Fgr_contig0007.seq check: 9764 from: 1 to: 1275 Fgr_contig0007 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI BsbI | | GCACGAGGGCCTCGCCCTCGGCTTTGTTGAAGCACGAACTCGCATACTGTCTGGGACAAACAGGCAACACTGCCGCCGTTAAGCCTCTGCGACAGGTTCT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCCGGAGCGGGAGCCGAAACAACTTCGTGCTTGAGCGTATGACAGACCCTGTTTGTCCGTTGTGACGGCGGCAATTCGGAGACGCTGTCCAAGA a A R G P R P R L C * S T N S H T V W D K Q A T L P P L S L C D R F S - b H E G L A L G F V E A R T R I L S G T N R Q H C R R * A S A T G S - c T R A S P S A L L K H E L A Y C L G Q T G N T A A V K P L R Q V L - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S P R A R P K T S A R V R M S D P V F L C C Q R R * A E A V P E - e R P G R G R S Q Q L V F E C V T Q S L C A V S G G N L R Q S L N - f V L A E G E A K N F C S S A Y Q R P C V P L V A A T L G R R C T R - BglI AflII Bpu10I | BspGI | | | | CTCTGATCTTAAGGAGGACCCCATGTGCCGTCACGAAGCCGCTGAGGCCCTTGGTGCCCTGGGCTGGGCAGACAACCTGGACATCCTCCGCGAATACCGT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GAGACTAGAATTCCTCCTGGGGTACACGGCAGTGCTTCGGCGACTCCGGGAACCACGGGACCCGACCCGTCTGTTGGACCTGTAGGAGGCGCTTATGGCA a L I L R R T P C A V T K P L R P L V P W A G Q T T W T S S A N T V - b L * S * G G P H V P S R S R * G P W C P G L G R Q P G H P P R I P * - c S D L K E D P M C R H E A A E A L G A L G W A D N L D I L R E Y R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d R Q D * P P G W T G D R L R Q P G Q H G P S P L C G P C G G R I G - e E R I K L L V G H A T V F G S L G K T G Q A P C V V Q V D E A F V T - f E S R L S S G M H R * S A A S A R P A R P Q A S L R S M R R S Y R - BseRI EciI | | GATCGCAAGGAGGAGGATATTAGCATTGTTGAGACATGCGAGATTGCCATTGAGCGTATCGAGTGGGAGAACTCGGCGGAGCGACAAAAAGAGAAGCTGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CTAGCGTTCCTCCTCCTATAATCGTAACAACTCTGTACGCTCTAACGGTAACTCGCATAGCTCACCCTCTTGAGCCGCCTCGCTGTTTTTCTCTTCGACG a I A R R R I L A L L R H A R L P L S V S S G R T R R S D K K R S C - b S Q G G G Y * H C * D M R D C H * A Y R V G E L G G A T K R E A A - c D R K E E D I S I V E T C E I A I E R I E W E N S A E R Q K E K L R - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d H D C P P P Y * C Q Q S M R S Q W Q A Y R T P S S P P A V F L S A A - e I A L L L I N A N N L C A L N G N L T D L P L V R R L S L F L L Q - f S R L S S S I L M T S V H S I A M S R I S H S F E A S R C F S F S - ClaI BbsI | | GCCCTAGTGACTTTGCCTCTATCGATCCCGCGCCCCCAATGCCCGAATCCGACAAGGAGGCCGAGGTTGAAGACCTTGGCCGAAAGCTCATGGACACAAA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CGGGATCACTGAAACGGAGATAGCTAGGGCGCGGGGGTTACGGGCTTAGGCTGTTCCTCCGGCTCCAACTTCTGGAACCGGCTTTCGAGTACCTGTGTTT a A L V T L P L S I P R P Q C P N P T R R P R L K T L A E S S W T Q T - b P * * L C L Y R S R A P N A R I R Q G G R G * R P W P K A H G H K - c P S D F A S I D P A P P M P E S D K E A E V E D L G R K L M D T N - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d G * H S Q R * R D R A G L A R I R C P P R P Q L G Q G F A * P C L - e A R T V K G R D I G R G W H G F G V L L G L N F V K A S L E H V C - f R G L S K A E I S G A G G I G S D S L S A S T S S R P R F S M S V F - EarI BglII BsaXI EcoNI | | | | CGCGGATCTCTTCTCCCGTTACCGCGCCATGTTCGCCCTCCGAGATCTCGCCTCTCCCCCTGACTTGCCAACTGCTACTCCTGCCGTCCTCGCCCTCGCA 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GCGCCTAGAGAAGAGGGCAATGGCGCGGTACAAGCGGGAGGCTCTAGAGCGGAGAGGGGGACTGAACGGTTGACGATGAGGACGGCAGGAGCGGGAGCGT a R I S S P V T A P C S P S E I S P L P L T C Q L L L L P S S P S Q - b R G S L L P L P R H V R P P R S R L S P * L A N C Y S C R P R P R K - c A D L F S R Y R A M F A L R D L A S P P D L P T A T P A V L A L A - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d R P D R R G N G R W T R G G L D R R E G Q S A L Q * E Q R G R G R - e V R I E E G T V A G H E G E S I E G R G R V Q W S S S R G D E G E C - f A S R K E R * R A M N A R R S R A E G G S K G V A V G A T R A R A - EciI BssSI EcoNI | | | AAGGGACTGTCCGATTCATCCGCCCTGTTCCGTCACGAGATTGCTTTTGTTTTCGGCCAGCTATCGCATCCTGCGTCCATTCCCGCCCTTACTGAGGCAT 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTCCCTGACAGGCTAAGTAGGCGGGACAAGGCAGTGCTCTAACGAAAACAAAAGCCGGTCGATAGCGTAGGACGCAGGTAAGGGCGGGAATGACTCCGTA a R D C P I H P P C S V T R L L L F S A S Y R I L R P F P P L L R H - b G T V R F I R P V P S R D C F C F R P A I A S C V H S R P Y * G I - c K G L S D S S A L F R H E I A F V F G Q L S H P A S I P A L T E A L - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d L P V T R N M R G T G D R S Q K Q K R G A I A D Q T W E R G * Q P M - e L S Q G I * G G Q E T V L N S K N E A L * R M R R G N G G K S L C - f F P S D S E D A R N R * S I A K T K P W S D C G A D M G A R V S A - Bsu36I BsbI DrdII BssSI EagI HindIII BsgI | | | | | | | | TGAGCAACACCAACGAGGCCAGCATGGTTCGTCACGAGGCGGCCGAGGCACTTGGAAGCTTGGGCGAAAAGGATGGCGTTGAAGATACCCTAAGGAAGTT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 ACTCGTTGTGGTTGCTCCGGTCGTACCAAGCAGTGCTCCGCCGGCTCCGTGAACCTTCGAACCCGCTTTTCCTACCGCAACTTCTATGGGATTCCTTCAA a * A T P T R P A W F V T R R P R H L E A W A K R M A L K I P * G S S - b E Q H Q R G Q H G S S R G G R G T W K L G R K G W R * R Y P K E V - c S N T N E A S M V R H E A A E A L G S L G E K D G V E D T L R K F - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d S C C W R P W C P E D R P P R P V Q F S P R F P H R Q L Y G L S T - e Q A V G V L G A H N T V L R G L C K S A Q A F L I A N F I G * P L - f N L L V L S A L M T R * S A A S A S P L K P S F S P T S S V R L F N - AceIII | CCTGCACGACAAGGAAAAGGTTGTTCGAGAGAGTTGTATTGTTGCGCTGGATATTGCCGAATACGAGAAGGGTGAGGACGCTGAGTATGCTTTGATTCCC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GGACGTGCTGTTCCTTTTCCAACAAGCTCTCTCAACATAACAACGCGACCTATAACGGCTTATGCTCTTCCCACTCCTGCGACTCATACGAAACTAAGGG a C T T R K R L F E R V V L L R W I L P N T R R V R T L S M L * F P - b P A R Q G K G C S R E L Y C C A G Y C R I R E G * G R * V C F D S R - c L H D K E K V V R E S C I V A L D I A E Y E K G E D A E Y A L I P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d G A R C P F P Q E L S N Y Q Q A P Y Q R I R S P H P R Q T H K S E - e E Q V V L F L N N S L T T N N R Q I N G F V L L T L V S L I S Q N G - f R C S L S F T T R S L Q I T A S S I A S Y S F P S S A S Y A K I G - ApaBI BsmI AlwNI| XmnI | BsmI PvuII || | | | | GAGTCCGCAGGAGCTGCTGCATGATTTATGAATGCGTTCGCATCGTCGAGTATTACGTCTAGTTGTTTTCATTCCATGAGTTACCGCATTCGCAGCTGTA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CTCAGGCGTCCTCGACGACGTACTAAATACTTACGCAAGCGTAGCAGCTCATAATGCAGATCAACAAAAGTAAGGTACTCAATGGCGTAAGCGTCGACAT a S P Q E L L H D L * M R S H R R V L R L V V F I P * V T A F A A V - b V R R S C C M I Y E C V R I V E Y Y V * L F S F H E L P H S Q L * - c E S A G A A A * F M N A F A S S S I T S S C F H S M S Y R I R S C R - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d R T R L L Q Q M I * S H T R M T S Y * T * N N E N W S N G C E C S Y - e L G C S S S C S K H I R E C R R T N R R T T K M G H T V A N A A T - f S D A P A A A H N I F A N A D D L I V D L Q K * E M L * R M R L Q - BseRI BsgI FspI Bst1107I BsaXI NruI BssSI | | | | | | GATGACTGTTGAGCCTTCGTCTGCACTGCGCAGTTGAACCGTAGTATACTTGACCTCCTCGCGACCACACTTGGGGCATGTCTCGTGCGCTGTGCTCTCG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CTACTGACAACTCGGAAGCAGACGTGACGCGTCAACTTGGCATCATATGAACTGGAGGAGCGCTGGTGTGAACCCCGTACAGAGCACGCGACACGAGAGC a D D C * A F V C T A Q L N R S I L D L L A T T L G A C L V R C A L G - b M T V E P S S A L R S * T V V Y L T S S R P H L G H V S C A V L S - c * L L S L R L H C A V E P * Y T * P P R D H T W G M S R A L C S R - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d I V T S G E D A S R L Q V T T Y K V E E R G C K P C T E H A T S E - e S S Q Q A K T Q V A C N F R L I S S R R A V V S P A H R T R Q A R - f L H S N L R R R C Q A T S G Y Y V Q G G R S W V Q P M D R A S H E R - AlwNI ApaBI PstI | | | | GTTTGCAAATTATGCTTCTCGACGGATTGGACGCTTGACTGCAGCTTCTGTCTCAGGAATGAAGGGAAATCCGATGGCTTCGTTTGCGTGACTGTGACTT 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CAAACGTTTAATACGAAGAGCTGCCTAACCTGCGAACTGACGTCGAAGACAGAGTCCTTACTTCCCTTTAGGCTACCGAAGCAAACGCACTGACACTGAA a L Q I M L L D G L D A * L Q L L S Q E * R E I R W L R L R D C D F - b V C K L C F S T D W T L D C S F C L R N E G K S D G F V C V T V T L - c F A N Y A S R R I G R L T A A S V S G M K G N P M A S F A * L * L - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d T Q L N H K E V S Q V S S Q L K Q R L F S P F D S P K T Q T V T V - e P K C I I S R S P N S A Q S C S R D * S H L S I R H S R K R S Q S K - f N A F * A E R R I P R K V A A E T E P I F P F G I A E N A H S H S - BsmI HgiEII | | TAGAGCCGGTGTCTCGATTTTCAGCGCCGCAGCATTCACAGCGCAAAACATTTCGTTGCGTACCCTTGGTAGCGGGCAAAAGATTACCACAGTCGGTACA 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 ATCTCGGCCACAGAGCTAAAAGTCGCGGCGTCGTAAGTGTCGCGTTTTGTAAAGCAACGCATGGGAACCATCGCCCGTTTTCTAATGGTGTCAGCCATGT a R A G V S I F S A A A F T A Q N I S L R T L G S G Q K I T T V G T - b E P V S R F S A P Q H S Q R K T F R C V P L V A G K R L P Q S V Q - c * S R C L D F Q R R S I H S A K H F V A Y P W * R A K D Y H S R Y K - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d K S G T D R N E A G C C E C R L V N R Q T G K T A P L L N G C D T C - e L A P T E I K L A A A N V A C F M E N R V R P L P C F I V V T P V - f * L R H R S K * R R L M * L A F C K T A Y G Q Y R A F S * W L R Y - ApaBI BsrDI | BssSI | | | AAAGACAAGAGTTCCAATCGCAGCCATTGCGTGCAAGTGCGGTCTGATTAGTTTGGGGAAGTTGAAGCCTCGTGC 1201 ---------+---------+---------+---------+---------+---------+---------+----- 1275 TTTCTGTTCTCAAGGTTAGCGTCGGTAACGCACGTTCACGCCAGACTAATCAAACCCCTTCAACTTCGGAGCACG a K D K S S N R S H C V Q V R S D * F G E V E A S C - b K T R V P I A A I A C K C G L I S L G K L K P R - c R Q E F Q S Q P L R A S A V * L V W G S * S L V - 1201 ---------+---------+---------+---------+---------+---------+---------+----- 1275 d F V L T G I A A M A H L H P R I L K P F N F G R A - e F S L L E L R L W Q T C T R D S * N P S T S A E H - f L L C S N W D C G N R A L A T Q N T Q P L Q L R T - Enzymes that do cut: AceIII AflII AlwNI ApaBI BbsI BglI BglII Bpu10I BsaXI BsbI BseRI BsgI BsmI BspGI BsrDI BssSI Bst1107I Bsu36I ClaI DrdII EagI EarI EciI EcoNI FspI HgiEII HindIII NruI PstI PvuII XmnI Enzymes that do not cut: AatII AhdI ApaI ApaLI AscI AvrII BamHI Bce83I BcgI BclI BfiI BplI BpmI Bpu1102I BsaI BsaBI BsiWI BsmBI BspEI BspLU11I BspMI BsrBI BsrGI BssHII BstEII BstXI DraI DraIII DrdI Eco47III Eco57I EcoRI EcoRV FseI HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PvuI RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XhoI