(Linear) MAP of: ./Fgr_contig0008.seq check: 3358 from: 1 to: 1226 Fgr_contig0008 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. Bce83I | CCCTCCGAGTTTTTTTTTTTTTTTTTTTTTAACTTGTAAAACACTCAAGCAGTCTGCATTGATCTATGGTTGTATTAAAACTAAAAGGGTATTGACGTGG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 GGGAGGCTCAAAAAAAAAAAAAAAAAAAAATTGAACATTTTGTGAGTTCGTCAGACGTAACTAGATACCAACATAATTTTGATTTTCCCATAACTGCACC a P S E F F F F F F F N L * N T Q A V C I D L W L Y * N * K G I D V G - b P P S F F F F F F L T C K T L K Q S A L I Y G C I K T K R V L T W - c L R V F F F F F F * L V K H S S S L H * S M V V L K L K G Y * R G - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d E S N K K K K K K L K Y F V * A T Q M S R H N Y * F * F P I S T - e R R T K K K K K K * S T F C E L L R C Q D I T T N F S F P Y Q R P - f G G L K K K K K K K V Q L V S L C D A N I * P Q I L V L L T N V H - RcaI VspI BsrDI BclI EarI | BplI | | | | | | GGTATTAATGTTCATTGCAACAGGGGCGTTTCTTCATCGGCTGGCTGATCATTCTCGTCAGTCTCTTCTTTATCATGATGAATGAGCTTCTCTCGGTACA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CCATAATTACAAGTAACGTTGTCCCCGCAAAGAAGTAGCCGACCGACTAGTAAGAGCAGTCAGAGAAGAAATAGTACTACTTACTCGAAGAGAGCCATGT a Y * C S L Q Q G R F F I G W L I I L V S L F F I M M N E L L S V H - b G I N V H C N R G V S S S A G * S F S S V S S L S * * M S F S R Y I - c V L M F I A T G A F L H R L A D H S R Q S L L Y H D E * A S L G T - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d P Y * H E N C C P R K K M P Q S I M R T L R K K I M I F S S R E T C - e T N I N M A V P A N R * R S A S * E R * D R R * * S S H A E R P V - f P I L T * Q L L P T E E D A P Q D N E D T E E K D H H I L K E R Y - BsbI MfeI MscI SanDI | | | | TCCATCCAACACAAGTCCCTGCGCCTGGTCCAACCACAATAGAAGTGACAATTGTGGCCAAAGGGACCCTCCATCCAACCTCGACCAACATCCAGTACAG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 AGGTAGGTTGTGTTCAGGGACGCGGACCAGGTTGGTGTTATCTTCACTGTTAACACCGGTTTCCCTGGGAGGTAGGTTGGAGCTGGTTGTAGGTCATGTC a P S N T S P C A W S N H N R S D N C G Q R D P P S N L D Q H P V Q - b H P T Q V P A P G P T T I E V T I V A K G T L H P T S T N I Q Y R - c S I Q H K S L R L V Q P Q * K * Q L W P K G P S I Q P R P T S S T G - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G D L V L G Q A Q D L W L L L S L Q P W L S G G D L R S W C G T C - e D M W C L D R R R T W G C Y F H C N H G F P G E M W G R G V D L V - f M W G V C T G A G P G V V I S T V I T A L P V R W G V E V L M W Y L - Tth111I BspGI SexAI | BplI | | | | GACAGTCCAGAAGATGAACTGTGTGTCAACTTCGATAAAGACGATGGTTGACCTGGTCATTTCCTTGCGATCATCGGGCTGAGTTAGACTCCACATGAAG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 CTGTCAGGTCTTCTACTTGACACACAGTTGAAGCTATTTCTGCTACCAACTGGACCAGTAAAGGAACGCTAGTAGCCCGACTCAATCTGAGGTGTACTTC a D S P E D E L C V N F D K D D G * P G H F L A I I G L S * T P H E E - b T V Q K M N C V S T S I K T M V D L V I S L R S S G * V R L H M K - c Q S R R * T V C Q L R * R R W L T W S F P C D H R A E L D S T * R - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S L G S S S S H T L K S L S S P Q G P * K R A I M P S L * V G C S - e P C D L L H V T H * S R Y L R H N V Q D N G Q S * R A S N S E V H L - f V T W F I F Q T D V E I F V I T S R T M E K R D D P Q T L S W M F - BsmI NsiI PvuI BcgI | | | AATGCATGGGCCAAAATCGAGCAGACGATTGGCAGCAAGTAAACAAACAAGAACGATCGTCGGTTTGATGCGAGGTGAATGTTTGTAGGGCTGACTCTTC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTACGTACCCGGTTTTAGCTCGTCTGCTAACCGTCGTTCATTTGTTTGTTCTTGCTAGCAGCCAAACTACGCTCCACTTACAAACATCCCGACTGAGAAG a C M G Q N R A D D W Q Q V N K Q E R S S V * C E V N V C R A D S S - b N A W A K I E Q T I G S K * T N K N D R R F D A R * M F V G L T L R - c M H G P K S S R R L A A S K Q T R T I V G L M R G E C L * G * L F - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S H M P W F R A S S Q C C T F L C S R D D T Q H S T F T Q L A S E E - e I C P G F D L L R N A A L L C V L V I T P K I R P S H K Y P Q S K - f F A H A L I S C V I P L L Y V F L F S R R N S A L H I N T P S V R - BcgI EarI EarI EarI EciI PshAI SapI BplI SapI | | | | | | GGATGACAGCGATAACGCTGCGAACTATCTGGCGGACGATTGTCACATAGATCGGGAAGAAGAGCCACACTCCGACAGTAGTTGGGGTTGTCTTGAAGAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CCTACTGTCGCTATTGCGACGCTTGATAGACCGCCTGCTAACAGTGTATCTAGCCCTTCTTCTCGGTGTGAGGCTGTCATCAACCCCAACAGAACTTCTC a D D S D N A A N Y L A D D C H I D R E E E P H S D S S W G C L E E - b M T A I T L R T I W R T I V T * I G K K S H T P T V V G V V L K S - c G * Q R * R C E L S G G R L S H R S G R R A T L R Q * L G L S * R A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S S L S L A A F * R A S S Q * M S R S S S G C E S L L Q P Q R S S - e P H C R Y R Q S S D P P R N D C L D P L L A V S R C Y N P N D Q L - f R I V A I V S R V I Q R V I T V Y I P F F L W V G V T T P T T K F L - BclI | CATCAAGATGGACGGTACGAAGTAGCCGATAGCGACACTGATCGGAATAGCCATAAGCTCACTATCGGGGAGATGACGGCTCGTAAAAATCTGATCAACT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GTAGTTCTACCTGCCATGCTTCATCGGCTATCGCTGTGACTAGCCTTATCGGTATTCGAGTGATAGCCCCTCTACTGCCGAGCATTTTTAGACTAGTTGA a H Q D G R Y E V A D S D T D R N S H K L T I G E M T A R K N L I N F - b I K M D G T K * P I A T L I G I A I S S L S G R * R L V K I * S T - c S R W T V R S S R * R H * S E * P * A H Y R G D D G S * K S D Q L - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d C * S P R Y S T A S L S V S R F L W L S V I P S I V A R L F R I L - e A D L H V T R L L R Y R C Q D S Y G Y A * * R P S S P E Y F D S * S - f M L I S P V F Y G I A V S I P I A M L E S D P L H R S T F I Q D V - BsmBI BsmI | | TCGCCATGTCCATCGTCTCTCTGTCGAGCATTCAAAACACTTCTCGCGCGGTGCAAAAAGGCAGGAATAATAACAAGTTCCCAAACAACAGCACCGCCCA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AGCGGTACAGGTAGCAGAGAGACAGCTCGTAAGTTTTGTGAAGAGCGCGCCACGTTTTTCCGTCCTTATTATTGTTCAAGGGTTTGTTGTCGTGGCGGGT a A M S I V S L S S I Q N T S R A V Q K G R N N N K F P N N S T A H - b S P C P S S L C R A F K T L L A R C K K A G I I T S S Q T T A P P T - c R H V H R L S V E H S K H F S R G A K R Q E * * Q V P K Q Q H R P - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d K A M D M T E R D L M * F V E R A T C F P L F L L L N G F L L V A W - e R W T W R R E T S C E F C K E R P A F L C S Y Y C T G L C C C R G - f E G H G D D R Q R A N L V S R A R H L F A P I I V L E W V V A G G - NcoI | CAAGATCAAACACCAACCATGGCCCCGTAGGATACGCGATAAGCACATTCGGTGCGTTGCATATACGAGCCGCTTCAACAGTGCTCACCGTCAAAAGGCC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 GTTCTAGTTTGTGGTTGGTACCGGGGCATCCTATGCGCTATTCGTGTAAGCCACGCAACGTATATGCTCGGCGAAGTTGTCACGAGTGGCAGTTTTCCGG a K I K H Q P W P R R I R D K H I R C V A Y T S R F N S A H R Q K A - b R S N T N H G P V G Y A I S T F G A L H I R A A S T V L T V K R P - c Q D Q T P T M A P * D T R * A H S V R C I Y E P L Q Q C S P S K G R - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d L I L C W G H G R L I R S L C M R H T A Y V L R K L L A * R * F A - e C S * V G V M A G Y S V R Y A C E T R Q M Y S G S * C H E G D F P - f V L D F V L W P G T P Y A I L V N P A N C I R A A E V T S V T L L G - GCCGAGAAAGGACAGGACGACGGCCATGACAGCGGTACTTCGCAGGGAATCCAGCGCGGCGCGGAAAAAGCTAATGAGATAGCATAAAGGCGTTCCGATG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 CGGCTCTTTCCTGTCCTGCTGCCGGTACTGTCGCCATGAAGCGTCCCTTAGGTCGCGCCGCGCCTTTTTCGATTACTCTATCGTATTTCCGCAAGGCTAC a A E K G Q D D G H D S G T S Q G I Q R G A E K A N E I A * R R S D G - b P R K D R T T A M T A V L R R E S S A A R K K L M R * H K G V P M - c R E R T G R R P * Q R Y F A G N P A R R G K S * * D S I K A F R W - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d A S F P C S S P W S L P V E C P I W R P A S F A L S I A Y L R E S - e R R S L V P R R G H C R Y K A P F G A R R P F L * H S L M F A N R H - f G L F S L V V A M V A T S R L S D L A A R F F S I L Y C L P T G I - BsaI BsmI BamHI | BssHII | BsrDI HpaI | | | | | | GCCGGGATCCGACTGAGACCTGGAATGCGCGCGTGGGAATGACATTGCGACCAGAGAAGCGCGGCGTTAACGTCGGAGTGAAGAAAGAGTGCGACGATGG 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 CGGCCCTAGGCTGACTCTGGACCTTACGCGCGCACCCTTACTGTAACGCTGGTCTCTTCGCGCCGCAATTGCAGCCTCACTTCTTTCTCACGCTGCTACC a R D P T E T W N A R V G M T L R P E K R G V N V G V K K E C D D G - b A G I R L R P G M R A W E * H C D Q R S A A L T S E * R K S A T M V - c P G S D * D L E C A R G N D I A T R E A R R * R R S E E R V R R W - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d P R S G V S V Q F A R T P I V N R G S F R P T L T P T F F S H S S P - e G P D S Q S R S H A R P F S M A V L S A R R * R R L S S L T R R H - f A P I R S L G P I R A H S H C Q S W L L A A N V D S H L F L A V I - BsaXI BseRI BsrBI SacII | | | | TAGCAGCGGCGAGGAGGATTGGTGGTATGATGAGAGAGCGGTATGAGAAGTGATGGATAGGGGCCTGCCGCGGCATGATGCAGTATTTTTCTTTTCTCTT 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 ATCGTCGCCGCTCCTCCTAACCACCATACTACTCTCTCGCCATACTCTTCACTACCTATCCCCGGACGGCGCCGTACTACGTCATAAAAAGAAAAGAGAA a S S G E E D W W Y D E R A V * E V M D R G L P R H D A V F F F S L - b A A A R R I G G M M R E R Y E K * W I G A C R G M M Q Y F S F L L - c * Q R R G G L V V * * E S G M R S D G * G P A A A * C S I F L F S C - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d L L P S S S Q H Y S S L A T H S T I S L P R G R C S A T N K K E R - e Y C R R P P N T T H H S L P I L L S P Y P G A A A H H L I K R K E - f T A A A L L I P P I I L S R Y S F H H I P A Q R P M I C Y K E K R K - BssSI | GTTATTGAAGGGTCAGAGCCTCGTGC 1201 ---------+---------+------ 1226 CAATAACTTCCCAGTCTCGGAGCACG a V I E G S E P R - b L L K G Q S L V - c Y * R V R A S C - 1201 ---------+---------+------ 1226 d T I S P D S G R A - e Q * Q L T L A E H - f N N F P * L R T - Enzymes that do cut: BamHI Bce83I BcgI BclI BplI BsaI BsaXI BsbI BseRI BsmI BsmBI BspGI BsrBI BsrDI BssHII BssSI EarI EciI HpaI MfeI MscI NcoI NsiI PshAI PvuI RcaI SacII SanDI SapI SexAI Tth111I VspI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BbsI BfiI BglI BglII BpmI Bpu10I Bpu1102I BsaBI BsgI BsiWI BspEI BspLU11I BspMI BsrGI Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI Eco47III Eco57I EcoNI EcoRI EcoRV FseI FspI HgiEII HindIII KpnI MluI NarI NdeI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI Psp1406I PstI PvuII RsrII SacI SalI ScaI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI XbaI XcmI XhoI XmnI