(Linear) MAP of: ./Fgr_contig0009.seq check: 6203 from: 1 to: 985 Fgr_contig0009 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. XhoI KpnI ApaI | | | | TTGGGTACCGGGCCCCCCTCGAGTTTTTTTTTTTTTTTTTTTGTTTGCAGCCAGATGTTGATGCCATTTATTTCNTAGGGGTANTCACGGAATGATCCAG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 AACCCATGGCCCGGGGGGAGCTCAAAAAAAAAAAAAAAAAAACAAACGTCGGTCTACAACTACGGTAAATAAAGNATCCCCATNAGTGCCTTACTAGGTC a L G T G P P S S F F F F F F V C S Q M L M P F I S * G ? S R N D P V - b W V P G P P R V F F F F F L F A A R C * C H L F ? R G ? H G M I Q - c G Y R A P L E F F F F F F C L Q P D V D A I Y F ? G V ? T E * S S - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d P Y R A G R S N K K K K K Q K C G S T S A M * K ? P T ? V S H D L - e Q T G P G G R T K K K K K K N A A L H Q H W K N ? L P ? * P I I W - f P V P G G E L K K K K K K T Q L W I N I G N I E ? P Y ? R F S G - ClaI | TATATAAAACCCATGTGAGAATAGTTCCCAAATTCCATCTGTCCGAAAAAAACACATTCATCTCATAAAGTCATCGATGTTGCATCCAATATCCGCTGCC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ATATATTTTGGGTACACTCTTATCAAGGGTTTAAGGTAGACAGGCTTTTTTTGTGTAAGTAGAGTATTTCAGTAGCTACAACGTAGGTTATAGGCGACGG a Y K T H V R I V P K F H L S E K N T F I S * S H R C C I Q Y P L P - b Y I K P M * E * F P N S I C P K K T H S S H K V I D V A S N I R C Q - c I * N P C E N S S Q I P S V R K K H I H L I K S S M L H P I S A A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d I Y F G H S F L E W I G D T R F F C M * R M F D D I N C G I D A A - e Y I F G M H S Y N G F E M Q G F F V C E D * L T M S T A D L I R Q - f T Y L V W T L I T G L N W R D S F F V N M E Y L * R H Q M W Y G S G - FspI BssSI XhoI | | | AAGCAACCTTGTTTTGCGCAACGGGACTCGTGTGGGCTCGAGGCCCGACGCTGTGGACGCATAGCTCGATATGGTAAATTCGCTTTTGTTCAATTTTTTG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TTCGTTGGAACAAAACGCGTTGCCCTGAGCACACCCGAGCTCCGGGCTGCGACACCTGCGTATCGAGCTATACCATTTAAGCGAAAACAAGTTAAAAAAC a S N L V L R N G T R V G S R P D A V D A * L D M V N S L L F N F L - b A T L F C A T G L V W A R G P T L W T H S S I W * I R F C S I F C - c K Q P C F A Q R D S C G L E A R R C G R I A R Y G K F A F V Q F F V - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d L C G Q K A C R S E H P S S A R R Q P R M A R Y P L N A K T * N K - e W A V K N Q A V P S T H A R P G V S H V C L E I H Y I R K Q E I K Q - f L L R T K R L P V R T P E L G S A T S A Y S S I T F E S K N L K K - BsaXI Bpu10I BsaI | | | TTTTTTGTATCGGAGTTTCCGTTTACTTGGACTTGGCCTTCTTAGCCTGAGCTTGCTCGTAAATCCAGTCATTGAGACCCGCACGGTTTCGTGCAATCTC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 AAAAAACATAGCCTCAAAGGCAAATGAACCTGAACCGGAAGAATCGGACTCGAACGAGCATTTAGGTCAGTAACTCTGGGCGTGCCAAAGCACGTTAGAG a F F V S E F P F T W T W P S * P E L A R K S S H * D P H G F V Q S R - b F L Y R S F R L L G L G L L S L S L L V N P V I E T R T V S C N L - c F C I G V S V Y L D L A F L A * A C S * I Q S L R P A R F R A I S - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d T K Q I P T E T * K S K A K K A Q A Q E Y I W D N L G A R N R A I E - e K K Y R L K R K S P S P R R L R L K S T F G T M S V R V T E H L R - f N K T D S N G N V Q V Q G E * G S S A R L D L * Q S G C P K T C D - NcoI DrdII| SphI EarI NruI || KpnI SalI | | | || | | GAAAGCGTAAAACTGCATGCGGGGAACAAAGATGGTGGTGTTCTCTTCGTACTCGACCTTGGGGCTGTCGCGAACCATGGTACCAAAGTTGTAGTCGTCG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CTTTCGCATTTTGACGTACGCCCCTTGTTTCTACCACCACAAGAGAAGCATGAGCTGGAACCCCGACAGCGCTTGGTACCATGGTTTCAACATCAGCAGC a K R K T A C G E Q R W W C S L R T R P W G C R E P W Y Q S C S R R - b E S V K L H A G N K D G G V L F V L D L G A V A N H G T K V V V V D - c K A * N C M R G T K M V V F S S Y S T L G L S R T M V P K L * S S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d F A Y F Q M R P V F I T T N E E Y E V K P S D R V M T G F N Y D D - e S L T F S C A P F L S P P T R K T S S R P A T A F W P V L T T T T - f R F R L V A H P S C L H H H E R R V R G Q P Q R S G H Y W L Q L R R - EarI RcaI SapI SalI | | | ACCTTCTTCTCGTACTTCATCATGAACTCGCGCCACCTGTTCTTGCCGTCCTTGCTCTTCATGGCGTCCTCGTCGACCTTGGCGGCGGGGTCGAAGTCAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TGGAAGAAGAGCATGAAGTAGTACTTGAGCGCGGTGGACAAGAACGGCAGGAACGAGAAGTACCGCAGGAGCAGCTGGAACCGCCGCCCCAGCTTCAGTC a P S S R T S S * T R A T C S C R P C S S W R P R R P W R R G R S Q - b L L L V L H H E L A P P V L A V L A L H G V L V D L G G G V E V R - c T F F S Y F I M N S R H L F L P S L L F M A S S S T L A A G S K S G - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d V K K E Y K M M F E R W R N K G D K S K M A D E D V K A A P D F D - e S R R R T S * * S S A G G T R A T R A R * P T R T S R P P P T S T L - f G E E R V E D H V R A V Q E Q R G Q E E H R G R R G Q R R P R L * - EcoNI BpmI StuI | Bce83I EciI XhoI | | | | | | | GAAAGGCCTCCTTGAGGTGCTCCATGATCTCGTCGTCGATCTTTGTGAGGCGGAGGCTGGAGCCCTTGACGCGCTCGAGGATGGACCAGTAGGTTTGCAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CTTTCCGGAGGAACTCCACGAGGTACTAGAGCAGCAGCTAGAAACACTCCGCCTCCGACCTCGGGAACTGCGCGAGCTCCTACCTGGTCATCCAAACGTA a E R P P * G A P * S R R R S L * G G G W S P * R A R G W T S R F A C - b K G L L E V L H D L V V D L C E A E A G A L D A L E D G P V G L H - c K A S L R C S M I S S S I F V R R R L E P L T R S R M D Q * V C M - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d P F A E K L H E M I E D D I K T L R L S S G K V R E L I S W Y T Q M - e F P R R S T S W S R T T S R Q S A S A P A R S A S S S P G T P K C - f S L G G Q P A G H D R R R D K H P P P Q L G Q R A R P H V L L N A - BbsI BspGI XmnI | BsmI | | | | GTGCTGGACGACCTTGACGGCGAATTGCTTCTCGATGTCTTCGTTGTTTTGGGCATTCTCGGCGTCAAAGTTCTTGGGCACGGGGGCACCGGCCATGTTA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CACGACCTGCTGGAACTGCCGCTTAACGAAGAGCTACAGAAGCAACAAAACCCGTAAGAGCCGCAGTTTCAAGAACCCGTGCCCCCGTGGCCGGTACAAT a A G R P * R R I A S R C L R C F G H S R R Q S S W A R G H R P C Y - b V L D D L D G E L L L D V F V V L G I L G V K V L G H G G T G H V I - c C W T T L T A N C F S M S S L F W A F S A S K F L G T G A P A M L - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d H Q V V K V A F Q K E I D E N N Q A N E A D F N K P V P A G A M N - e T S S S R S P S N S R S T K T T K P M R P T L T R P C P P V P W T - f H A P R G Q R R I A E R H R R Q K P C E R R * L E Q A R P C R G H * - BamHI PvuI | | TCGAGGGGATCCATGATGACTGGTGGATTGTCTGCGATCGTGATGGAGGGGATTTTGGTGATGTTTGGTGTATTCAAGCTGTGTTTGAGGTTGTCGTTGG 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 AGCTCCCCTAGGTACTACTGACCACCTAACAGACGCTAGCACTACCTCCCCTAAAACCACTACAAACCACATAAGTTCGACACAAACTCCAACAGCAACC a R G D P * * L V D C L R S * W R G F W * C L V Y S S C V * G C R W - b E G I H D D W W I V C D R D G G D F G D V W C I Q A V F E V V V G - c S R G S M M T G G L S A I V M E G I L V M F G V F K L C L R L S L G - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d D L P D M I V P P N D A I T I S P I K T I N P T N L S H K L N D N - e I S P I W S S Q H I T Q S R S P P S K P S T Q H I * A T N S T T T P - f R P S G H H S T S Q R R D H H L P N Q H H K T Y E L Q T Q P Q R Q - BsrDI EcoRV BssSI | | | GCAAAAACCTTGAACGTGGGGCAATGATGATGGAGGGGCACAGAAGCCACAAATGATATCAGCGTATAGTGTTTGCGCCTCGTGC 901 ---------+---------+---------+---------+---------+---------+---------+---------+----- 985 CGTTTTTGGAACTTGCACCCCGTTACTACTACCTCCCCGTGTCTTCGGTGTTTACTATAGTCGCATATCACAAACGCGGAGCACG a A K T L N V G Q * * W R G T E A T N D I S V * C L R L V - b Q K P * T W G N D D G G A Q K P Q M I S A Y S V C A S C - c K N L E R G A M M M E G H R S H K * Y Q R I V F A P R - 901 ---------+---------+---------+---------+---------+---------+---------+---------+----- 985 d P L F R S R P A I I I S P C L L W L H Y * R I T N A G R A - e C F G Q V H P L S S P P A C F G C I I D A Y L T Q A E H - f A F V K F T P C H H H L P V S A V F S I L T Y H K R R T - Enzymes that do cut: ApaI BamHI BbsI Bce83I BpmI Bpu10I BsaI BsaXI BsmI BspGI BsrDI BssSI ClaI DrdII EarI EciI EcoNI EcoRV FspI KpnI NcoI NruI PvuI RcaI SalI SapI SphI StuI XhoI XmnI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BcgI BclI BfiI BglI BglII BplI Bpu1102I BsaBI BsbI BseRI BsgI BsiWI BsmBI BspEI BspLU11I BspMI BsrBI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I DraI DraIII DrdI EagI Eco47III Eco57I EcoRI FseI HgiEII HindIII HpaI MfeI MluI MscI NarI NdeI NgoAIV NheI NotI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuII RsrII SacI SacII SanDI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SrfI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XcmI