(Linear) MAP of: ./Fgr_contig0010.seq check: 2771 from: 1 to: 939 Fgr_contig0010 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI ApaBI SexAI SalI NcoI | | | | | GCACGAGGTTCTCTTGCAACCTTTGCGACCTTCGACAACTCCACGATCTTCGACAAGTCCCATCACCAGGTCGACTAATAACAGCAGCCATGGCTTCCGA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCAAGAGAACGTTGGAAACGCTGGAAGCTGTTGAGGTGCTAGAAGCTGTTCAGGGTAGTGGTCCAGCTGATTATTGTCGTCGGTACCGAAGGCT a A R G S L A T F A T F D N S T I F D K S H H Q V D * * Q Q P W L P R - b H E V L L Q P L R P S T T P R S S T S P I T R S T N N S S H G F R - c T R F S C N L C D L R Q L H D L R Q V P S P G R L I T A A M A S E - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S T R K C G K R G E V V G R D E V L G M V L D V L L L L W P K R - e R P E R A V K A V K S L E V I K S L D W * W T S * Y C C G H S G - f V L N E Q L R Q S R R C S W S R R C T G D G P R S I V A A M A E S - AceIII Eco57I BssSI Bpu10I | | | | GAAGGCAAACAACCCCATGCGGGAGCTGAAGATTCAGAAGCTCGTTCTGAACATCTCCGTCGGAGAGTCTGGTGATAGACTCACTCGTGCGGCTAAGGTT 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CTTCCGTTTGTTGGGGTACGCCCTCGACTTCTAAGTCTTCGAGCAAGACTTGTAGAGGCAGCCTCTCAGACCACTATCTGAGTGAGCACGCCGATTCCAA a R Q T T P C G S * R F R S S F * T S P S E S L V I D S L V R L R F - b E G K Q P H A G A E D S E A R S E H L R R R V W * * T H S C G * G S - c K A N N P M R E L K I Q K L V L N I S V G E S G D R L T R A A K V - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S P L C G W A P A S S E S A R E S C R R R L T Q H Y V * E H P * P - e L L C V V G H P L Q L N L L E N Q V D G D S L R T I S E S T R S L N - f F A F L G M R S S F I * F S T R F M E T P S D P S L S V R A A L T - PshAI BspEI BpmI | BcgI | | | | CTGGAGCAACTTTCCGGACAGACACCCGTCTACAGCAAGGCTCGTTACACCGTCCGAACTTTCGGTATCCGACGTAACGAAAAGATTGCTGTCCACGTCA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 GACCTCGTTGAAAGGCCTGTCTGTGGGCAGATGTCGTTCCGAGCAATGTGGCAGGCTTGAAAGCCATAGGCTGCATTGCTTTTCTAACGACAGGTGCAGT a W S N F P D R H P S T A R L V T P S E L S V S D V T K R L L S T S - b G A T F R T D T R L Q Q G S L H R P N F R Y P T * R K D C C P R H - c L E Q L S G Q T P V Y S K A R Y T V R T F G I R R N E K I A V H V T - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d E P A V K R V S V R R C C P E N C R G F K R Y G V Y R F S Q Q G R * - e Q L L K G S L C G D V A L S T V G D S S E T D S T V F L N S D V D - f R S C S E P C V G T * L L A R * V T R V K P I R R L S F I A T W T - XhoI BcgI Bpu10I Bce83I | BseRI SacI | | | | | | CCGTCCGAGGCCCCAAGGCTGAGGAGATTCTCGAGCGTGGCCTCAAGGTCAAGGAGTACGAGCTCCGCAAGCGCAACTTCTCCGAGACTGGCAACTTCGG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GGCAGGCTCCGGGGTTCCGACTCCTCTAAGAGCTCGCACCGGAGTTCCAGTTCCTCATGCTCGAGGCGTTCGCGTTGAAGAGGCTCTGACCGTTGAAGCC a P S E A P R L R R F S S V A S R S R S T S S A S A T S P R L A T S A - b R P R P Q G * G D S R A W P Q G Q G V R A P Q A Q L L R D W Q L R - c V R G P K A E E I L E R G L K V K E Y E L R K R N F S E T G N F G - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R G L G W P Q P S E R A H G * P * P T R A G C A C S R R S Q C S R - e G D S A G L S L L N E L T A E L D L L V L E A L A V E G L S A V E - f V T R P G L A S S I R S R P R L T L S Y S S R L R L K E S V P L K P - HgiEII ClaI MfeI SexAI | | | CTTCGGTATCAGCGAGCACATCGATCTCGGTATTAAGTACGACCCCTCAATTGGTATCTACGGCATGGATTTCTACTGCTGCATGACCCGACCTGGTGAG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GAAGCCATAGTCGCTCGTGTAGCTAGAGCCATAATTCATGCTGGGGAGTTAACCATAGATGCCGTACCTAAAGATGACGACGTACTGGGCTGGACCACTC a S V S A S T S I S V L S T T P Q L V S T A W I S T A A * P D L V S - b L R Y Q R A H R S R Y * V R P L N W Y L R H G F L L L H D P T W * A - c F G I S E H I D L G I K Y D P S I G I Y G M D F Y C C M T R P G E - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d S R Y * R A C R D R Y * T R G R L Q Y R R C P N R S S C S G V Q H - e A E T D A L V D I E T N L V V G * N T D V A H I E V A A H G S R T L - f K P I L S C M S R P I L Y S G E I P I * P M S K * Q Q M V R G P S - DrdII BsaI BseRI | | | | CGCGTCACCCGCCGCCGCCGAACAAAGTCCAAGATCGGTGCCTCTCACCGCATCAAGCGCGAGGAGACCGTCAAGTGGTTCAAGTCTCGCTTCGATGGTA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCGCAGTGGGCGGCGGCGGCTTGTTTCAGGTTCTAGCCACGGAGAGTGGCGTAGTTCGCGCTCCTCTGGCAGTTCACCAAGTTCAGAGCGAAGCTACCAT a A S P A A A E Q S P R S V P L T A S S A R R P S S G S S L A S M V - b R H P P P P N K V Q D R C L S P H Q A R G D R Q V V Q V S L R W Y - c R V T R R R R T K S K I G A S H R I K R E E T V K W F K S R F D G I - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d A R * G G G G F L T W S R H R E G C * A R P S R * T T * T E S R H Y - e A D G A A A S C L G L D T G R V A D L A L L G D L P E L R A E I T - f R T V R R R R V F D L I P A E * R M L R S S V T L H N L D R K S P - TTGTCCGATAAACGGTTGAAAAGGAAAATGGTTATTTGAATTTACGGATTGGTCACGGCGAAAACTAAGGGGAAAACACACATGGGGCATGTATTTTCTG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AACAGGCTATTTGCCAACTTTTCCTTTTACCAATAAACTTAAATGCCTAACCAGTGCCGCTTTTGATTCCCCTTTTGTGTGTACCCCGTACATAAAAGAC a L S D K R L K R K M V I * I Y G L V T A K T K G K T H M G H V F S V - b C P I N G * K G K W L F E F T D W S R R K L R G K H T W G M Y F L - c V R * T V E K E N G Y L N L R I G H G E N * G E N T H G A C I F C - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d Q G I F P Q F P F H N N S N V S Q D R R F S L P F C V H P M Y K R - e N D S L R N F L F I T I Q I * P N T V A F V L P F V C M P C T N E - f I T R Y V T S F S F P * K F K R I P * P S F * P S F V C P A H I K Q - BsrDI AceIII BsaI NgoAIV | | | | TTGCCATTGCTGCATCAGCTCGACTCTTTTAGTCGAGCCACGGCCTGAGAGACCGACCGGCACTCTGCCGGCTTTCCGATATTCACTCACTCTGAATGTG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 AACGGTAACGACGTAGTCGAGCTGAGAAAATCAGCTCGGTGCCGGACTCTCTGGCTGGCCGTGAGACGGCCGAAAGGCTATAAGTGAGTGAGACTTACAC a A I A A S A R L F * S S H G L R D R P A L C R L S D I H S L * M * - b L P L L H Q L D S F S R A T A * E T D R H S A G F P I F T H S E C D - c C H C C I S S T L L V E P R P E R P T G T L P A F R Y S L T L N V - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d N G N S C * S S E K L R A V A Q S V S R C E A P K G I N V * E S H - e T A M A A D A R S K * D L W P R L S R G A S Q R S E S I * E S Q I H - f Q W Q Q M L E V R K T S G R G S L G V P V R G A K R Y E S V R F T - SspI BsmBI BspLU11I | | | ACATCTGCCATCAATCGTCAGATCATTGGTACTTTGTCTAAAAAAAAAAAAAAATATTTACGTCTACGTGAGACGCTATAAACATGTCCTTTGGGACTTT 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TGTAGACGGTAGTTAGCAGTCTAGTAACCATGAAACAGATTTTTTTTTTTTTTTATAAATGCAGATGCACTCTGCGATATTTGTACAGGAAACCCTGAAA a H L P S I V R S L V L C L K K K K N I Y V Y V R R Y K H V L W D F - b I C H Q S S D H W Y F V * K K K K I F T S T * D A I N M S F G T L - c T S A I N R Q I I G T L S K K K K K Y L R L R E T L * T C P L G L * - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d S M Q W * D D S * Q Y K T * F F F F I N V D V H S A I F M D K P V K - e C R G D I T L D N T S Q R F F F F F I * T * T L R * L C T R Q S K - f V D A M L R * I M P V K D L F F F F Y K R R R S V S Y V H G K P S - NsiI | GATGCATCCAAAAAAAAAAAAAAAAAACTCGGAGGGGGG 901 ---------+---------+---------+--------- 939 CTACGTAGGTTTTTTTTTTTTTTTTTTGAGCCTCCCCCC a D A S K K K K K K L G G G - b M H P K K K K K N S E G - c C I Q K K K K K T R R G - 901 ---------+---------+---------+--------- 939 d I C G F F F F F F E S P P - e S A D L F F F F F S P P P - f Q H M W F F F F F V R L P - Enzymes that do cut: AceIII ApaBI Bce83I BcgI BpmI Bpu10I BsaI BseRI BsmBI BspEI BspLU11I BsrDI BssSI ClaI DrdII Eco57I HgiEII MfeI NcoI NgoAIV NsiI PshAI SacI SalI SexAI SspI XhoI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaI ApaLI AscI AvrII BamHI BbsI BclI BfiI BglI BglII BplI Bpu1102I BsaBI BsaXI BsbI BsgI BsiWI BsmI BspGI BspMI BsrBI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I DraI DraIII DrdI EagI EarI EciI Eco47III EcoNI EcoRI EcoRV FseI FspI HindIII HpaI KpnI MluI MscI NarI NdeI NheI NotI NruI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI Psp1406I PstI PvuI PvuII RcaI RsrII SacII SanDI SapI ScaI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I StuI SwaI Tth111I VspI XbaI XcmI XmnI