(Linear) MAP of: ./Fgr_contig0011.seq check: 2359 from: 1 to: 848 Fgr_contig0011 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. EarI BssSI BcgI SapI | | | GCACGAGGGTCGAGAATCAACATACATCAGCAAATGGGACAAGGCGGGCAAGCATCAATGACGGTCTATGGGAAGAGCAAATACAGGGGAACTAATGTCA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCCAGCTCTTAGTTGTATGTAGTCGTTTACCCTGTTCCGCCCGTTCGTAGTTACTGCCAGATACCCTTCTCGTTTATGTCCCCTTGATTACAGT a A R G S R I N I H Q Q M G Q G G Q A S M T V Y G K S K Y R G T N V M - b H E G R E S T Y I S K W D K A G K H Q * R S M G R A N T G E L M S - c T R V E N Q H T S A N G T R R A S I N D G L W E E Q I Q G N * C H - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P D L I L M C * C I P C P P C A D I V T * P F L L Y L P V L T - e V L T S F * C V D A F P V L R A L M L S P R H S S C I C P F * H * - f C S P R S D V Y M L L H S L A P L C * H R D I P L A F V P S S I D - NruI BcgI PvuI | BcgI SacI | | | | | TGTTTTTTTATATTTTGCTTGGGCTGACCGATCGCGATGCGTTTTTACAGTGACATCCTCCACCCCAACCGTGCCAACATCTCCAAGGAGGAGCTCCGCG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 ACAAAAAAATATAAAACGAACCCGACTGGCTAGCGCTACGCAAAAATGTCACTGTAGGAGGTGGGGTTGGCACGGTTGTAGAGGTTCCTCCTCGAGGCGC a F F Y I L L G L T D R D A F L Q * H P P P Q P C Q H L Q G G A P R - b C F F I F C L G * P I A M R F Y S D I L H P N R A N I S K E E L R E - c V F L Y F A W A D R S R C V F T V T S S T P T V P T S P R R S S A - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d M N K * I K S P S V S R S A N K C H C G G G W G H W C R W P P A G R - e T K K Y K A Q A S R D R H T K V T V D E V G V T G V D G L L L E A - f H K K I N Q K P Q G I A I R K * L S M R W G L R A L M E L S S S R - BbsI BstXI BsaXI HgiEII | BseRI EcoNI BglII| BsaI BfiI |XcmI | | || | | | | AGAAGCTCGGTTCCCTCTACAAGGCCCAGAAGGACCAGATCTCCGTCTTCGGTCTCCGAACCCAGTTCGGTGGTGGCAAGACCACCGGCTTCGCTCTCGT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TCTTCGAGCCAAGGGAGATGTTCCGGGTCTTCCTGGTCTAGAGGCAGAAGCCAGAGGCTTGGGTCAAGCCACCACCGTTCTGGTGGCCGAAGCGAGAGCA a E A R F P L Q G P E G P D L R L R S P N P V R W W Q D H R L R S R - b K L G S L Y K A Q K D Q I S V F G L R T Q F G G G K T T G F A L V - c R S S V P S T R P R R T R S P S S V S E P S S V V A R P P A S L S S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S A R N G R C P G S P G S R R R R D G F G T R H H C S W R S R E R - e L L E T G E V L G L L V L D G D E T E S G L E T T A L G G A E S E - f S F S P E R * L A W F S W I E T K P R R V W N P P P L V V P K A R T - XmnI BglI | | CTATGACTCCCCCGAGGCCATGAAGAAGTTCGAGCCTCAGTACCGATTGGTGCGCGTTGGCCTCGCCACCAAGGCCGAGCGTGCTTCCCGACAGCAGCGT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GATACTGAGGGGGCTCCGGTACTTCTTCAAGCTCGGAGTCATGGCTAACCACGCGCAACCGGAGCGGTGGTTCCGGCTCGCACGAAGGGCTGTCGTCGCA a L * L P R G H E E V R A S V P I G A R W P R H Q G R A C F P T A A C - b Y D S P E A M K K F E P Q Y R L V R V G L A T K A E R A S R Q Q R - c M T P P R P * R S S S L S T D W C A L A S P P R P S V L P D S S V - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R H S G R P W S S T R A E T G I P A R Q G R W W P R A H K G V A A - e D I V G G L G H L L E L R L V S Q H A N A E G G L G L T S G S L L T - f * S E G S A M F F N S G * Y R N T R T P R A V L A S R A E R C C R - HgiEII | GCGTATAACCAACAAAAACAAAAAGGTTTAGTCTGGCTGACACTCGACAATAGGCAAGCAGCGCAAGAACCGACAAAAGACCCTCCGAGGTACGGCAAAG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CGCATATTGGTTGTTTTTGTTTTTCCAAATCAGACCGACTGTGAGCTGTTATCCGTTCGTCGCGTTCTTGGCTGTTTTCTGGGAGGCTCCATGCCGTTTC a V * P T K T K R F S L A D T R Q * A S S A R T D K R P S E V R Q R - b A Y N Q Q K Q K G L V W L T L D N R Q A A Q E P T K D P P R Y G K G - c R I T N K N K K V * S G * H S T I G K Q R K N R Q K T L R G T A K - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d H T Y G V F V F L N L R A S V R C Y A L L A L V S L L G E S T R C L - e R I V L L F L F T * D P Q C E V I P L C R L F R C F V R R P V A F - f A Y L W C F C F P K T Q S V S S L L C A A C S G V F S G G L Y P L - PvuII BsrBI PstI| | || GTCAAGGGTGCCAAGGCGAAGAAGGAGAAATAAACGATTCATGGCTTGGCTTGTGTATATCCTCGGGCTGGTTGGGGAGCGGCTGCTGTTATGTCTGCAG 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CAGTTCCCACGGTTCCGCTTCTTCCTCTTTATTTGCTAAGTACCGAACCGAACACATATAGGAGCCCGACCAACCCCTCGCCGACGACAATACAGACGTC a S R V P R R R R R N K R F M A W L V Y I L G L V G E R L L L C L Q - b Q G C Q G E E G E I N D S W L G L C I S S G W L G S G C C Y V C S - c V K G A K A K K E K * T I H G L A C V Y P R A G W G A A A V M S A A - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d D L T G L R L L L F L R N M A Q S T Y I R P S T P S R S S N H R C - e T L P A L A F F S F Y V I * P K A Q T Y G R A P Q P A A A T I D A - f P * P H W P S S P S I F S E H S P K H I D E P Q N P L P Q Q * T Q L - NgoAIV BsmI NarI | EciI | | | | CTGCGTGCATTCGGTGGTCATGCGGGTGCGTCCATTTACTACGGTCCATCCTCGTCGTCGGCGCCGGCTTTGGCATAGGGTACAGGGACTTGCTGGCGGA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GACGCACGTAAGCCACCAGTACGCCCACGCAGGTAAATGATGCCAGGTAGGAGCAGCAGCCGCGGCCGAAACCGTATCCCATGTCCCTGAACGACCGCCT a L R A F G G H A G A S I Y Y G P S S S S A P A L A * G T G T C W R T - b C V H S V V M R V R P F T T V H P R R R R R L W H R V Q G L A G G - c A C I R W S C G C V H L L R S I L V V G A G F G I G Y R D L L A D - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d S R A N P P * A P A D M * * P G D E D D A G A K A Y P V P V Q Q R - e A A H M R H D H P H T W K S R D M R T T P A P K P M P Y L S K S A S - f Q T C E T T M R T R G N V V T W G R R R R R S Q C L T C P S A P P - BspGI NspV | | CGCGGGGGCTATCTGGACTCGACGAGGGGGATTGAAGGCTATGCTTTCACATTCCTTGCTCAATACACTAGCATGAAATCAATGGTGTTTTTCGGTTTCG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 GCGCCCCCGATAGACCTGAGCTGCTCCCCCTAACTTCCGATACGAAAGTGTAAGGAACGAGTTATGTGATCGTACTTTAGTTACCACAAAAAGCCAAAGC a R G L S G L D E G D * R L C F H I P C S I H * H E I N G V F R F R - b R G G Y L D S T R G I E G Y A F T F L A Q Y T S M K S M V F F G F E - c A G A I W T R R G G L K A M L S H S L L N T L A * N Q W C F S V S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d V R P S D P S S S P S Q L S H K * M G Q E I C * C S I L P T K R N R - e A P A I Q V R R P P N F A I S E C E K S L V S A H F * H H K E T E - f R P P * R S E V L P I S P * A K V N R A * Y V L M F D I T N K P K - BsmBI | AAACCAAAAACAAAAAATAGCAACGTCTCTGATTTCCAAAAAAAAAAA 801 ---------+---------+---------+---------+-------- 848 TTTGGTTTTTGTTTTTTATCGTTGCAGAGACTAAAGGTTTTTTTTTTT a N Q K Q K I A T S L I S K K K - b T K N K K * Q R L * F P K K K - c K P K T K N S N V S D F Q K K K - 801 ---------+---------+---------+---------+-------- 848 d F W F C F I A V D R I E L F F F - e F G F V F F L L T E S K W F F F - f S V L F L F Y C R R Q N G F F F - Enzymes that do cut: BbsI BcgI BfiI BglI BglII BsaI BsaXI BseRI BsmI BsmBI BspGI BsrBI BssSI BstXI EarI EciI EcoNI HgiEII NarI NgoAIV NruI NspV PstI PvuI PvuII SacI SapI XcmI XmnI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI Bce83I BclI BplI BpmI Bpu10I Bpu1102I BsaBI BsbI BsgI BsiWI BspEI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstEII Bsu36I ClaI DraI DraIII DrdI DrdII EagI Eco47III Eco57I EcoRI EcoRV FseI FspI HindIII HpaI KpnI MfeI MluI MscI NcoI NdeI NheI NotI NsiI PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I RcaI RsrII SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XhoI