(Linear) MAP of: ./Fgr_contig0012.seq check: 7831 from: 1 to: 900 Fgr_contig0012 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI RcaI NheI BglI | | | | GCACGAGGCTAAAGTTCACCACATTTCTTCTTGTGCCTCTTAACCGATCATCATGAAGGCATCCTTGTTCATGGTCGGCGCTAGCGCCATCCTGGCTTCG 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCGATTTCAAGTGGTGTAAAGAAGAACACGGAGAATTGGCTAGTAGTACTTCCGTAGGAACAAGTACCAGCCGCGATCGCGGTAGGACCGAAGC a A R G * S S P H F F L C L L T D H H E G I L V H G R R * R H P G F G - b H E A K V H H I S S C A S * P I I M K A S L F M V G A S A I L A S - c T R L K F T T F L L V P L N R S S * R H P C S W S A L A P S W L R - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d C S A L T * W M E E Q A E * G I M M F A D K N M T P A L A M R A E - e R P * L E G C K K K H R K V S * * S P M R T * P R R * R W G P K - f V L S F N V V N R R T G R L R D D H L C G Q E H D A S A G D Q S R - Psp1406I BbsI Pfl1108I | | | GCCAGCCCCATTGGAAACGTTCTTAACGAGCGTGCCATGAAGACCGAATGGGTCTACGAGGTTGTCACCGTCGTCGTCACTGAGGGTGCCGAGCCCAAGA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 CGGTCGGGGTAACCTTTGCAAGAATTGCTCGCACGGTACTTCTGGCTTACCCAGATGCTCCAACAGTGGCAGCAGCAGTGACTCCCACGGCTCGGGTTCT a Q P H W K R S * R A C H E D R M G L R G C H R R R H * G C R A Q E - b A S P I G N V L N E R A M K T E W V Y E V V T V V V T E G A E P K K - c P A P L E T F L T S V P * R P N G S T R L S P S S S L R V P S P R - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d A L G M P F T R L S R A M F V S H T * S T T V T T T V S P A S G L - e P W G W Q F R E * R A H W S S R I P R R P Q * R R R * Q P H R A W S - f G A G N S V N K V L T G H L G F P D V L N D G D D D S L T G L G L - FspI Pfl1108I BglI BstEII Tth111I BseRI | | | | | | AGGCTGCGCACACCGCCACAGTCTACGAAGCCCCCCAGGCTCCCAAGGTCACCCAGGACGCTGTCAAGGTCGTCGAGGAGAAGCCTGCTCCTGCTCCTGT 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TCCGACGCGTGTGGCGGTGTCAGATGCTTCGGGGGGTCCGAGGGTTCCAGTGGGTCCTGCGACAGTTCCAGCAGCTCCTCTTCGGACGAGGACGAGGACA a G C A H R H S L R S P P G S Q G H P G R C Q G R R G E A C S C S C - b A A H T A T V Y E A P Q A P K V T Q D A V K V V E E K P A P A P V - c R L R T P P Q S T K P P R L P R S P R T L S R S S R R S L L L L L S - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d F A A C V A V T * S A G W A G L T V W S A T L T T S S F G A G A G T - e P Q A C R W L R R L G G P E W P * G P R Q * P R R P S A Q E Q E Q - f L S R V G G C D V F G G L S G L D G L V S D L D D L L L R S R S R - BseRI XcmI Bpu10I | SalI Bsu36I| | | | || CGTGGTCAAGGAGGAAGCTCCCAAGCCTGTCGTCAAGGAGGAGCCTCCTAAGCCCAAGGTCGTCACTGTCTGGGTCGACCCTACGCCCACCCCTAAGGTG 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GCACCAGTTCCTCCTTCGAGGGTTCGGACAGCAGTTCCTCCTCGGAGGATTCGGGTTCCAGCAGTGACAGACCCAGCTGGGATGCGGGTGGGGATTCCAC a R G Q G G S S Q A C R Q G G A S * A Q G R H C L G R P Y A H P * G G - b V V K E E A P K P V V K E E P P K P K V V T V W V D P T P T P K V - c W S R R K L P S L S S R R S L L S P R S S L S G S T L R P P L R W - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d T T L S S A G L G T T L S S G G L G L T T V T Q T S G V G V G L T - e R P * P P L E W A Q R * P P A E * A W P R * Q R P R G * A W G * P - f D H D L L F S G L R D D L L L R R L G L D D S D P D V R R G G R L H - Pfl1108I BcgI | BcgI BsrBI BsrBI | | Bpu10I | | | | | | GTCAAGGAGTACACCGAGAAGGTTGTCGAGAAGCCTGCCGCTCCCGCTCCCGTCTACGAGGCCCCTCAGCCCGTCGTCGAGAAGGCCAAGACTACCATCC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CAGTTCCTCATGTGGCTCTTCCAACAGCTCTTCGGACGGCGAGGGCGAGGGCAGATGCTCCGGGGAGTCGGGCAGCAGCTCTTCCGGTTCTGATGGTAGG a Q G V H R E G C R E A C R S R S R L R G P S A R R R E G Q D Y H P - b V K E Y T E K V V E K P A A P A P V Y E A P Q P V V E K A K T T I Q - c S R S T P R R L S R S L P L P L P S T R P L S P S S R R P R L P S - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d T L S Y V S F T T S F G A A G A G T * S A G * G T T S F A L V V M - e P * P T C R S P Q R S A Q R E R E R R R P G E A R R R S P W S * W G - f D L L V G L L N D L L R G S G S G D V L G R L G D D L L G L S G D - Tth111I Bsu36I NheI Pfl1108I | | | | | AGAAGGTCGTCAAGCCTACCCCCACCCGAGCCGAGCCTAAGGTTACTGTTGAAGCTAGCATCGACACCTCTAACCTTTCTCTCGATGGTGCCTACGACAC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TCTTCCAGCAGTTCGGATGGGGGTGGGCTCGGCTCGGATTCCAATGACAACTTCGATCGTAGCTGTGGAGATTGGAAAGAGAGCTACCACGGATGCTGTG a E G R Q A Y P H P S R A * G Y C * S * H R H L * P F S R W C L R H - b K V V K P T P T R A E P K V T V E A S I D T S N L S L D G A Y D T - c R R S S S L P P P E P S L R L L L K L A S T P L T F L S M V P T T P - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d W F T T L G V G V R A S G L T V T S A L M S V E L R E R S P A * S V - e S P R * A * G W G L R A * P * Q Q L * C R C R * G K E R H H R R C - f L L D D L R G G G S G L R L N S N F S A D V G R V K R E I T G V V - Bce83I BcgI NgoAIV BsrBI SacI | | | | CGTCATGCTTGCCTACCACAACATCCACCGCTCCAACCACTCTGCCCCTGCTCTTGAGTGGGACGATGAGCTCGCCGGCTACGCCGAGAACACTGCCAAT 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 GCAGTACGAACGGATGGTGTTGTAGGTGGCGAGGTTGGTGAGACGGGGACGAGAACTCACCCTGCTACTCGAGCGGCCGATGCGGCTCTTGTGACGGTTA a R H A C L P Q H P P L Q P L C P C S * V G R * A R R L R R E H C Q W - b V M L A Y H N I H R S N H S A P A L E W D D E L A G Y A E N T A N - c S C L P T T T S T A P T T L P L L L S G T M S S P A T P R T L P M - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d T M S A * W L M W R E L W E A G A R S H S S S S A P * A S F V A L - e R * A Q R G C C G G S W G S Q G Q E Q T P R H A R R S R R S C Q W - f G D H K G V V V D V A G V V R G R S K L P V I L E G A V G L V S G I - BsrDI BcgI BstXI | Bce83I | | | | GGCTGTGTCTTTGAGCACGACATGGACCAAGGCAATGGCGGTTACGGTCAGAACCTCGCTTCCTGGGGTGCCACCAGCGACATTGATGGACTCAAGAACA 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CCGACACAGAAACTCGTGCTGTACCTGGTTCCGTTACCGCCAATGCCAGTCTTGGAGCGAAGGACCCCACGGTGGTCGCTGTAACTACCTGAGTTCTTGT a L C L * A R H G P R Q W R L R S E P R F L G C H Q R H * W T Q E Q - b G C V F E H D M D Q G N G G Y G Q N L A S W G A T S D I D G L K N K - c A V S L S T T W T K A M A V T V R T S L P G V P P A T L M D S R T - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d P Q T K S C S M S W P L P P * P * F R A E Q P A V L S M S P S L F - e H S H R Q A R C P G L C H R N R D S G R K R P H W W R C Q H V * S C - f A T D K L V V H V L A I A T V T L V E S G P T G G A V N I S E L V - PflMI BfiI BsaXI | | | AGGCTGCTGCTGGTGGTATTACCAACCAGTGGTACGACAGTGAGATGTCCAACTGGGCTTTCTACGGCCAGGAGAACCCCCCCTCCGACATGAACATCGA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 TCCGACGACGACCACCATAATGGTTGGTCACCATGCTGTCACTCTACAGGTTGACCCGAAAGATGCCGGTCCTCTTGGGGGGGAGGCTGTACTTGTAGCT a G C C W W Y Y Q P V V R Q * D V Q L G F L R P G E P P L R H E H R - b A A A G G I T N Q W Y D S E M S N W A F Y G Q E N P P S D M N I - c R L L L V V L P T S G T T V R C P T G L S T A R R T P P P T * T S - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d L A A A P P I V L W H Y S L S I D L Q A K * P W S F G G E S M F M S - e P Q Q Q H Y * W G T T R C H S T W S P K R R G P S G G R R C S C R - f L S S S T T N G V L P V V T L H G V P S E V A L L V G G G V H V D - Enzymes that do cut: BbsI Bce83I BcgI BfiI BglI Bpu10I BsaXI BseRI BsrBI BsrDI BssSI BstEII BstXI Bsu36I FspI NgoAIV NheI Pfl1108I PflMI Psp1406I RcaI SacI SalI Tth111I XcmI Enzymes that do not cut: AatII AceIII AflII AhdI AlwNI ApaI ApaBI ApaLI AscI AvrII BamHI BclI BglII BplI BpmI Bpu1102I BsaI BsaBI BsbI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrGI BssHII Bst1107I ClaI DraI DraIII DrdI DrdII EagI EarI EciI Eco47III Eco57I EcoNI EcoRI EcoRV FseI HgiEII HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NotI NruI NsiI NspV PacI PinAI PmeI PmlI PshAI PstI PvuI PvuII RsrII SacII SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI VspI XbaI XhoI XmnI