(Linear) MAP of: ./Fgr_contig0013.seq check: 9043 from: 1 to: 821 Fgr_contig0013 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI HgiEII KpnI | | | GCACGAGGATCACTTACACCGTTCCTGTCGATCACACCAACAACGGTACCGCTGTCTACCCTCCCCACACCTACCACCCTGTTCCTTCTGGTGGTGCTCA 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCTAGTGAATGTGGCAAGGACAGCTAGTGTGGTTGTTGCCATGGCGACAGATGGGAGGGGTGTGGATGGTGGGACAAGGAAGACCACCACGAGT a A R G S L T P F L S I T P T T V P L S T L P T P T T L F L L V V L T - b H E D H L H R S C R S H Q Q R Y R C L P S P H L P P C S F W W C S - c T R I T Y T V P V D H T N N G T A V Y P P H T Y H P V P S G G A H - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P D S V G N R D I V G V V T G S D V R G V G V V R N R R T T S - e V L I V * V T G T S * V L L P V A T * G G W V * W G T G E P P A * - f C S S * K C R E Q R D C W C R Y R Q R G E G C R G G Q E K Q H H E - BseRI BseRI | BseRI | | BseRI | | | PinAI| | | | BseRI Bsu36I KpnI || | | | | | | CCCTACCGGTGTCGCTCCTCCTCCTCCTCACTCCGGTTCCGAGGGTGGAAAGACTCCTCAGGGCGAGCAACCTAGCAACGATGACGGTACCGACAGCGGC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GGGATGGCCACAGCGAGGAGGAGGAGGAGTGAGGCCAAGGCTCCCACCTTTCTGAGGAGTCCCGCTCGTTGGATCGTTGCTACTGCCATGGCTGTCGCCG a L P V S L L L L L T P V P R V E R L L R A S N L A T M T V P T A A - b P Y R C R S S S S S L R F R G W K D S S G R A T * Q R * R Y R Q R Q - c P T G V A P P P P H S G S E G G K T P Q G E Q P S N D D G T D S G - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d V R G T D S R R R R V G T G L T S L S R L A L L R A V I V T G V A A - e G V P T A G G G G * E P E S P P F V G * P S C G L L S S P V S L P - f G * R H R E E E E E S R N R P H F S E E P R A V * C R H R Y R C R - BseRI AceIII BssSI | | | AGCAACGGTGGCAGCAAGGGTAGCGACAGCGGAAGCAACGGCGGCAGCTCCTCCGGCTCCGGTTCTGGCTCCGGCTCCGACTCTAGCGAGGACCACGAGC 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TCGTTGCCACCGTCGTTCCCATCGCTGTCGCCTTCGTTGCCGCCGTCGAGGAGGCCGAGGCCAAGACCGAGGCCGAGGCTGAGATCGCTCCTGGTGCTCG a A T V A A R V A T A E A T A A A P P A P V L A P A P T L A R T T S - b Q R W Q Q G * R Q R K Q R R Q L L R L R F W L R L R L * R G P R A - c S N G G S K G S D S G S N G G S S S G S G S G S G S D S S E D H E P - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d A V T A A L T A V A S A V A A A G G A G T R A G A G V R A L V V L - e L L P P L L P L S L P L L P P L E E P E P E P E P E S E L S S W S - f C C R H C C P Y R C R F C R R C S R R S R N Q S R S R S * R P G R A - MscI Bpu10I BsaI | | | | CTTCCACCTCTGATGTTCCTGAGCCTGTGACCGCTGGTGCTGGCATGAACGCCGTCACTGGTCTCTTGGCCATTGTCGGTTTCGCTGCTGCCTACCTCAT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GAAGGTGGAGACTACAAGGACTCGGACACTGGCGACCACGACCGTACTTGCGGCAGTGACCAGAGAACCGGTAACAGCCAAAGCGACGACGGATGGAGTA a L P P L M F L S L * P L V L A * T P S L V S W P L S V S L L P T S S - b F H L * C S * A C D R W C W H E R R H W S L G H C R F R C C L P H - c S T S D V P E P V T A G A G M N A V T G L L A I V G F A A A Y L I - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d R G G R I N R L R H G S T S A H V G D S T E Q G N D T E S S G V E - e G E V E S T G S G T V A P A P M F A T V P R K A M T P K A A A * R M - f K W R Q H E Q A Q S R Q H Q C S R R * Q D R P W Q R N R Q Q R G * - EarI BspGI EcoNI | VspI BseRI BsaXI NsiI | | | | | | | CTAAACTGGACCTCTTCTAGGTTGATTGATTAATTGGTCGATCAACTTCACCTCACCTCCTCTTTCTTCAAACATTCTTACGATCCTTACATGATGCATG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 GATTTGACCTGGAGAAGATCCAACTAACTAATTAACCAGCTAGTTGAAGTGGAGTGGAGGAGAAAGAAGTTTGTAAGAATGCTAGGAATGTACTACGTAC a K L D L F * V D * L I G R S T S P H L L F L Q T F L R S L H D A * - b L N W T S S R L I D * L V D Q L H L T S S F F K H S Y D P Y M M H E - c * T G P L L G * L I N W S I N F T S P P L S S N I L T I L T * C M - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d D L S S R K * T S Q N I P R D V E G * R R K R * V N K R D K C S A H - e * V P G R R P Q N I L Q D I L K V E G G R E E F M R V I R V H H M - f R F Q V E E L N I S * N T S * S * R V E E K K L C E * S G * M I C - BsrBI BstEII | | AAAAGCATAACACTTGGGTATGATTTGGTTTTTGTTCGCAAAAGCGAGCGGCGTTAGTAAATAGGGGGTTATTTTTATTCCGCTTCGGTAACCAATGTGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TTTTCGTATTGTGAACCCATACTAAACCAAAAACAAGCGTTTTCGCTCGCCGCAATCATTTATCCCCCAATAAAAATAAGGCGAAGCCATTGGTTACACT a K A * H L G M I W F L F A K A S G V S K * G V I F I P L R * P M * - b K H N T W V * F G F C S Q K R A A L V N R G L F L F R F G N Q C D - c K S I T L G Y D L V F V R K S E R R * * I G G Y F Y S A S V T N V I - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d F A Y C K P I I Q N K N A F A L P T L L Y P T I K I G S R Y G I H - e F L M V S P Y S K T K T R L L S R R * Y I P P * K * E A E T V L T - f S F C L V Q T H N P K Q E C F R A A N T F L P N N K N R K P L W H S - BsmI NsiI BcgI BcgI | | | TTGGGCCAAGCGATGACGGGATTGGGGGGAATGCATTATATGAGAACCGAACGCGATATGCAAACGACTTATATGCTAATTTCTACATTTAATACTTCAC 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AACCCGGTTCGCTACTGCCCTAACCCCCCTTACGTAATATACTCTTGGCTTGCGCTATACGTTTGCTGAATATACGATTAAAGATGTAAATTATGAAGTG a L G Q A M T G L G G M H Y M R T E R D M Q T T Y M L I S T F N T S H - b W A K R * R D W G E C I I * E P N A I C K R L I C * F L H L I L H - c G P S D D G I G G N A L Y E N R T R Y A N D L Y A N F Y I * Y F T - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d N P W A I V P N P P I C * I L V S R S I C V V * I S I E V N L V E - e I P G L S S P I P P F A N Y S F R V R Y A F S K Y A L K * M * Y K V - f Q A L R H R S Q P S H M I H S G F A I H L R S I H * N R C K I S * - Eco57I EcoNI DraI | | | | ACTAGCGACCATTCATTTAGACTAGATTTTGATTTACCTTGCACCTACTGAAGGGTGTACTTTAAAAATATAGACGGAAAAAAAAAAAAAAAAAAACTCG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 TGATCGCTGGTAAGTAAATCTGATCTAAAACTAAATGGAACGTGGATGACTTCCCACATGAAATTTTTATATCTGCCTTTTTTTTTTTTTTTTTTTGAGC a * R P F I * T R F * F T L H L L K G V L * K Y R R K K K K K K T R - b T S D H S F R L D F D L P C T Y * R V Y F K N I D G K K K K K K L G - c L A T I H L D * I L I Y L A P T E G C T L K I * T E K K K K K N S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d C * R G N M * V L N Q N V K C R S F P T S * F Y L R F F F F F F V R - e S A V M * K S * I K I * R A G V S P H V K F I Y V S F F F F F F E - f V L S W E N L S S K S K G Q V * Q L T Y K L F I S P F F F F F F S - ApaI | GAGGGGGGGGCCCNGTACCCA 801 ---------+---------+- 821 CTCCCCCCCCGGGNCATGGGT a R G G P ? T - b G G G P V P - c E G G A ? Y P - 801 ---------+---------+- 821 d L P P G ? V W - e S P P A ? Y G - f P P P P G T G - Enzymes that do cut: AceIII ApaI BcgI Bpu10I BsaI BsaXI BseRI BsmI BspGI BsrBI BssSI BstEII Bsu36I DraI EarI Eco57I EcoNI HgiEII KpnI MscI NsiI PinAI VspI Enzymes that do not cut: AatII AflII AhdI AlwNI ApaBI ApaLI AscI AvrII BamHI BbsI Bce83I BclI BfiI BglI BglII BplI BpmI Bpu1102I BsaBI BsbI BsgI BsiWI BsmBI BspEI BspLU11I BspMI BsrDI BsrGI BssHII Bst1107I BstXI ClaI DraIII DrdI DrdII EagI EciI Eco47III EcoRI EcoRV FseI FspI HindIII HpaI MfeI MluI NarI NcoI NdeI NgoAIV NheI NotI NruI NspV PacI Pfl1108I PflMI PmeI PmlI PshAI Psp1406I PstI PvuI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I XbaI XcmI XhoI XmnI