(Linear) MAP of: ./Fgr_contig0016.seq check: 7194 from: 1 to: 715 Fgr_contig0016 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI MfeI Bpu1102I BbsI | | | | GCACGAGGGTCCTTCTTTGTGATACCCAATTGAAAATGGAAACTCCTTTTACCGTCAAGGCTCAGCCGGGAACTGATGTCTGGAAGCAGCCTCCTTCTAC 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCCAGGAAGAAACACTATGGGTTAACTTTTACCTTTGAGGAAAATGGCAGTTCCGAGTCGGCCCTTGACTACAGACCTTCGTCGGAGGAAGATG a A R G S F F V I P N * K W K L L L P S R L S R E L M S G S S L L L Q - b H E G P S L * Y P I E N G N S F Y R Q G S A G N * C L E A A S F Y - c T R V L L C D T Q L K M E T P F T V K A Q P G T D V W K Q P P S T - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d V L T R R Q S V W N F I S V G K V T L A * G P V S T Q F C G G E V - e C S P G E K H Y G I S F P F E K * R * P E A P F Q H R S A A E K * - f R P D K K T I G L Q F H F S R K G D L S L R S S I D P L L R R R - AatII Eco57I | | AGACGTCTTCACAGCCCCCTTCCGTCCTCACTCTATCGCTCCCCTGAAGCACTTTATCTCAGCAACAATCACTTTCCGCACAACCTACGTCCACCAGTAC 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 TCTGCAGAAGTGTCGGGGGAAGGCAGGAGTGAGATAGCGAGGGGACTTCGTGAAATAGAGTCGTTGTTAGTGAAAGGCGTGTTGGATGCAGGTGGTCATG a T S S Q P P S V L T L S L P * S T L S Q Q Q S L S A Q P T S T S T - b R R L H S P L P S S L Y R S P E A L Y L S N N H F P H N L R P P V R - c D V F T A P F R P H S I A P L K H F I S A T I T F R T T Y V H Q Y - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d S T K V A G K R G * E I A G R F C K I E A V I V K R V V * T W W Y - e L R R * L G R G D E S * R E G S A S * R L L L * K G C L R R G G T - f C V D E C G G E T R V R D S G Q L V K D * C C D S E A C G V D V L V - BseRI BbsI | NarI AceIII BsrGI | | | | | GATCAAGCCTGTCTTCTCCTCACCTTCACCAAGCCAGGCGCCCCCCGAAAGTGGATCAAGACGGGCATTGAGCTGTACAATGAGCACCCGCGCTACTCAA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 CTAGTTCGGACAGAAGAGGAGTGGAAGTGGTTCGGTCCGCGGGGGGCTTTCACCTAGTTCTGCCCGTAACTCGACATGTTACTCGTGGGCGCGATGAGTT a I K P V F S S P S P S Q A P P E S G S R R A L S C T M S T R A T Q - b S S L S S P H L H Q A R R P P K V D Q D G H * A V Q * A P A L L N - c D Q A C L L L T F T K P G A P R K W I K T G I E L Y N E H P R Y S T - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d S * A Q R R R V K V L G P A G R F H I L V P M S S Y L S C G R * E - e R D L R D E G * R * W A L R G G F T S * S P C Q A T C H A G A S S L - f I L G T K E E G E G L W A G G S L P D L R A N L Q V I L V R A V * - EarI RcaI SapI | | CTGTAACATGCGACTCTTGGGCCGATTGGAGCGTTGAGGCGGTAGGACCCAACGATGAAGCTGGTGTCATGAGTGGTGAGAAGAGCGTCACTATCAAGGC 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GACATTGTACGCTGAGAACCCGGCTAACCTCGCAACTCCGCCATCCTGGGTTGCTACTTCGACCACAGTACTCACCACTCTTCTCGCAGTGATAGTTCCG a L * H A T L G P I G A L R R * D P T M K L V S * V V R R A S L S R R - b C N M R L L G R L E R * G G R T Q R * S W C H E W * E E R H Y Q G - c V T C D S W A D W S V E A V G P N D E A G V M S G E K S V T I K A - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d V T V H S E Q A S Q L T S A T P G L S S A P T M L P S F L T V I L A - e Q L M R S K P R N S R Q P P L V W R H L Q H * S H H S S R * * * P - f S Y C A V R P G I P A N L R Y S G V I F S T D H T T L L A D S D L - BfiI | GATGAAGGTCGAGGATGCCCTGGGTGTTTGTCTCTGGGTCTACAGGGTCGATGAGAACGGCGAAAAGACGCCGTTGAGACAGACTAACTGGGTGTACGGC 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CTACTTCCAGCTCCTACGGGACCCACAAACAGAGACCCAGATGTCCCAGCTACTCTTGCCGCTTTTCTGCGGCAACTCTGTCTGATTGACCCACATGCCG a * R S R M P W V F V S G S T G S M R T A K R R R * D R L T G C T A - b D E G R G C P G C L S L G L Q G R * E R R K D A V E T D * L G V R R - c M K V E D A L G V C L W V Y R V D E N G E K T P L R Q T N W V Y G - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d I F T S S A R P T Q R Q T * L T S S F P S F V G N L C V L Q T Y P - e S S P R P H G P H K D R P R C P R H S R R F S A T S V S * S P T R - f R H L D L I G Q T N T E P D V P D I L V A F L R R Q S L S V P H V A - AlwNI SacI PvuII | XhoI| BsaI| | || || | GACGAAGGTGGTGAGGGCTGGGAGCTCGAGGTCTCAGCTGCTGTCGCCAGGCCAGATCCTCATAAGAACATCAAGGATGATCTTGAGGCTACGTTTGACA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 CTGCTTCCACCACTCCCGACCCTCGAGCTCCAGAGTCGACGACAGCGGTCCGGTCTAGGAGTATTCTTGTAGTTCCTACTAGAACTCCGATGCAAACTGT a T K V V R A G S S R S Q L L S P G Q I L I R T S R M I L R L R L T - b R R W * G L G A R G L S C C R Q A R S S * E H Q G * S * G Y V * Q - c D E G G E G W E L E V S A A V A R P D P H K N I K D D L E A T F D K - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S S P P S P Q S S S T E A A T A L G S G * L F M L S S R S A V N S - e R R L H H P S P A R P R L Q Q R W A L D E Y S C * P H D Q P * T Q C - f V F T T L A P L E L D * S S D G P W I R M L V D L I I K L S R K V - Bce83I AatII | | AGTTGGACGTCGAATGGGAGAAGCCTACAGCTTAAACAAATTCACAAGTTAAGCAAGTATTGACAATATACACAAAGACATCACATGCAAGGATCATAAA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 TCAACCTGCAGCTTACCCTCTTCGGATGTCGAATTTGTTTAAGTGTTCAATTCGTTCATAACTGTTATATGTGTTTCTGTAGTGTACGTTCCTAGTATTT a S W T S N G R S L Q L K Q I H K L S K Y * Q Y T Q R H H M Q G S * K - b V G R R M G E A Y S L N K F T S * A S I D N I H K D I T C K D H K - c L D V E W E K P T A * T N S Q V K Q V L T I Y T K T S H A R I I K - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d L N S T S H S F G V A * V F E C T L C T N V I Y V F V D C A L I M F - e T P R R I P S A * L K F L N V L * A L I S L I C L S M V H L S * L - f L Q V D F P L L R C S L C I * L N L L Y Q C Y V C L C * M C P D Y - AAAAAAAAAAAAAAA 701 ---------+----- 715 TTTTTTTTTTTTTTT a K K K K - b K K K K K - c K K K K - 701 ---------+----- 715 d F F F F F - e F F F F F - f F F F F F - Enzymes that do cut: AatII AceIII AlwNI BbsI Bce83I BfiI Bpu1102I BsaI BseRI BsrGI BssSI EarI Eco57I MfeI NarI PvuII RcaI SacI SapI XhoI Enzymes that do not cut: AflII AhdI ApaI ApaBI ApaLI AscI AvrII BamHI BcgI BclI BglI BglII BplI BpmI Bpu10I BsaBI BsaXI BsbI BsgI BsiWI BsmI BsmBI BspEI BspGI BspLU11I BspMI BsrBI BsrDI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI EciI Eco47III EcoNI EcoRI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MluI MscI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PflMI PinAI PmeI PmlI PshAI Psp1406I PstI PvuI RsrII SacII SalI SanDI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI StuI SwaI Tth111I VspI XbaI XcmI XmnI