(Linear) MAP of: ./Fgr_contig0020.seq check: 308 from: 1 to: 899 Fgr_contig0020 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. Bce83I XcmI | BsrGI | | | GGCCCCCCCCTCCGAGTTTTTTTTTTTTTTTTTTTTACAAAGCCCAAGCCTTACATGGCGTATTGTACAACTCAAGATAGATACAGTATGCCTCTGATTT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CCGGGGGGGGAGGCTCAAAAAAAAAAAAAAAAAAAATGTTTCGGGTTCGGAATGTACCGCATAACATGTTGAGTTCTATCTATGTCATACGGAGACTAAA a G P P L R V F F F F F F T K P K P Y M A Y C T T Q D R Y S M P L I S - b A P P S E F F F F F F L Q S P S L T W R I V Q L K I D T V C L * F - c P P P P S F F F F F F Y K A Q A L H G V L Y N S R * I Q Y A S D F - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d G G R R T K K K K K K V F G L G * M A Y Q V V * S L Y L I G R I - e G G G G L K K K K K K * L A W A K C P T N Y L E L Y I C Y A E S K - f A G G E S N K K K K K K C L G L R V H R I T C S L I S V T H R Q N - EarI BssSI SanDI | | | CCAGCAAAGACGGCTACTCTTCCCGGATCACGAGCATCTCACTTCCTTTTATCATGTTCTCATCCTCATCTTACGCCTCCGTTGTGGGGGGGACCCTCAG 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GGTCGTTTCTGCCGATGAGAAGGGCCTAGTGCTCGTAGAGTGAAGGAAAATAGTACAAGAGTAGGAGTAGAATGCGGAGGCAACACCCCCCCTGGGAGTC a S K D G Y S S R I T S I S L P F I M F S S S S Y A S V V G G T L R - b P A K T A T L P G S R A S H F L L S C S H P H L T P P L W G G P S D - c Q Q R R L L F P D H E H L T S F Y H V L I L I L R L R C G G D P Q - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d E L L S P * E E R I V L M E S G K I M N E D E D * A E T T P P V R L - e W C L R S S K G S * S C R V E K * * T R M R M K R R R Q P P S G * - f G A F V A V R G P D R A D * K R K D H E * G * R V G G N H P P G E - HgiEII XcmI | | ACCAGCAGCCTCCCGGAACCGTCGCTGGTTAAGAATTTGCTCAACCTTCTCCATCGTTCCAATGGTCTTGGTCTGTCCGATATGTGACCACTTGGCGTCG 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TGGTCGTCGGAGGGCCTTGGCAGCGACCAATTCTTAAACGAGTTGGAAGAGGTAGCAAGGTTACCAGAACCAGACAGGCTATACACTGGTGAACCGCAGC a P A A S R N R R W L R I C S T F S I V P M V L V C P I C D H L A S - b Q Q P P G T V A G * E F A Q P S P S F Q W S W S V R Y V T T W R R - c T S S L P E P S L V K N L L N L L H R S N G L G L S D M * P L G V D - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d G A A E R F R R Q N L I Q E V K E M T G I T K T Q G I H S W K A D - e V L L R G S G D S T L F K S L R R W R E L P R P R D S I H G S P T - f S W C G G P V T A P * S N A * G E G D N W H D Q D T R Y T V V Q R R - PflMI BspLU11I | AceIII | | | | | ATCTCGCCCTTCTCTGCCTCTGGTAGAGCATCCATCTTCTTACCCTCGCCCAGCTCGCTAAACTCCCACATGTTGGCCTTCATTCCCACGCCGTAGAATT 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 TAGAGCGGGAAGAGACGGAGACCATCTCGTAGGTAGAAGAATGGGAGCGGGTCGAGCGATTTGAGGGTGTACAACCGGAAGTAAGGGTGCGGCATCTTAA a I S P F S A S G R A S I F L P S P S S L N S H M L A F I P T P * N W - b S R P S L P L V E H P S S Y P R P A R * T P T C W P S F P R R R I - c L A L L C L W * S I H L L T L A Q L A K L P H V G L H S H A V E L - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d I E G K E A E P L A D M K K G E G L E S F E W M N A K M G V G Y F - e S R A R R Q R Q Y L M W R R V R A W S A L S G C T P R * E W A T S N - f D R G E R G R T S C G D E * G R G A R * V G V H Q G E N G R R L I - BsgI PvuII BsmBI SalI AhdI | | | | | GGTGCTTGCGGAGGTACGCGAGCCACAGCTGCACCGTCTCGGGGTTTCCATCGCGGATCTGAATAAGTCGACGTAGTGTCTTTCGCTCGAAATTCTCCTG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 CCACGAACGCCTCCATGCGCTCGGTGTCGACGTGGCAGAGCCCCAAAGGTAGCGCCTAGACTTATTCAGCTGCATCACAGAAAGCGAGCTTTAAGAGGAC a C L R R Y A S H S C T V S G F P S R I * I S R R S V F R S K F S C - b G A C G G T R A T A A P S R G F H R G S E * V D V V S F A R N S P A - c V L A E V R E P Q L H R L G V S I A D L N K S T * C L S L E I L L - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d Q H K R L Y A L W L Q V T E P N G D R I Q I L R R L T K R E F N E Q - e T S A S T R S G C S C R R P T E M A S R F L D V Y H R E S S I R R - f P A Q P P V R A V A A G D R P K W R P D S Y T S T T D K A R F E G - Eco47III BssSI BspGI | | | | CGACTTCTTGAAGATGAAGTTGTCTCGTGGGACGGTCCAGCGCTCAGTGATACGTGGGAGAGGAACGGGTCCGTAGGCGGGGAGTCCCAGGTAGTAAGCC 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 GCTGAAGAACTTCTACTTCAACAGAGCACCCTGCCAGGTCGCGAGTCACTATGCACCCTCTCCTTGCCCAGGCATCCGCCCCTCAGGGTCCATCATTCGG a D F L K M K L S R G T V Q R S V I R G R G T G P * A G S P R * * A - b T S * R * S C L V G R S S A Q * Y V G E E R V R R R G V P G S K P - c R L L E D E V V S W D G P A L S D T W E R N G S V G G E S Q V V S R - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d S K K F I F N D R P V T W R E T I R P L P V P G Y A P L G L Y Y A - e R S R S S S T T E H S P G A S L S V H S L F P D T P P S D W T T L - f A V E Q L H L Q R T P R D L A * H Y T P S S R T R L R P T G P L L G - BsrBI EcoRI AceIII Eco57I BpmI Eco57I | | | | | | GCTCTTAGAGCAAAATCGGAGAAGAATTCGAGAGGTTGGACGCTGAAGGATCGGAGCTGGAGGTCGCATGAGGGGATGCCGTGTTCGGCCTCTCGCTTTA 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 CGAGAATCTCGTTTTAGCCTCTTCTTAAGCTCTCCAACCTGCGACTTCCTAGCCTCGACCTCCAGCGTACTCCCCTACGGCACAAGCCGGAGAGCGAAAT a A L R A K S E K N S R G W T L K D R S W R S H E G M P C S A S R F R - b L L E Q N R R R I R E V G R * R I G A G G R M R G C R V R P L A L - c S * S K I G E E F E R L D A E G S E L E V A * G D A V F G L S L * - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d A R L A F D S F F E L P Q V S F S R L Q L D C S P I G H E A E R K - e R E * L L I P S S N S L N S A S P D S S S T A H P S A T N P R E S * - f S K S C F R L L I R S T P R Q L I P A P P R M L P H R T R G R A K - BsaXI AlwNI BsgI BglII| Bpu1102I | | || | GAGGCTTCAGGTGCAGGGCCTGAATGGATCGAGGAAACCGGGGTTCTTGTTCGTTCTTGCTAGGCTCTGGCTTGTTCGGTACAAGATCTCCTGGCTTAGC 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTCCGAAGTCCACGTCCCGGACTTACCTAGCTCCTTTGGCCCCAAGAACAAGCAAGAACGATCCGAGACCGAACAAGCCATGTTCTAGAGGACCGAATCG a G F R C R A * M D R G N R G S C S F L L G S G L F G T R S P G L A - b E A S G A G P E W I E E T G V L V R S C * A L A C S V Q D L L A * P - c R L Q V Q G L N G S R K P G F L F V L A R L W L V R Y K I S W L S - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d L P K L H L A Q I S R P F R P E Q E N K S P E P K N P V L D G P K A - e L S * T C P R F P D L F G P N K N T R A L S Q S T R Y L I E Q S L - f S A E P A P G S H I S S V P T R T R E Q * A R A Q E T C S R R A * - StuI BglI | BssSI | | | CAATGAGGCCTGTGTTCGACGGGCGATCCATGACACTTCGGATGAGAAAGCCCGCAAGGGTCTAATACTTTGACGCATCATCTTGCCTGTCCCTCGTGC 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+--------- 899 GTTACTCCGGACACAAGCTGCCCGCTAGGTACTGTGAAGCCTACTCTTTCGGGCGTTCCCAGATTATGAAACTGCGTAGTAGAACGGACAGGGAGCACG a N E A C V R R A I H D T S D E K A R K G L I L * R I I L P V P R - b M R P V F D G R S M T L R M R K P A R V * Y F D A S S C L S L V - c Q * G L C S T G D P * H F G * E S P Q G S N T L T H H L A C P S C - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+--------- 899 d L S A Q T R R A I W S V E S S F A R L P R I S Q R M M K G T G R A - e W H P R H E V P S G H C K P H S L G C P D L V K V C * R A Q G E H - f G I L G T N S P R D M V S R I L F G A L T * Y K S A D D Q R D R T - Enzymes that do cut: AceIII AhdI AlwNI Bce83I BglI BglII BpmI Bpu1102I BsaXI BsgI BsmBI BspGI BspLU11I BsrBI BsrGI BssSI EarI Eco47III Eco57I EcoRI HgiEII PflMI PvuII SalI SanDI StuI XcmI Enzymes that do not cut: AatII AflII ApaI ApaBI ApaLI AscI AvrII BamHI BbsI BcgI BclI BfiI BplI Bpu10I BsaI BsaBI BsbI BseRI BsiWI BsmI BspEI BspMI BsrDI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdI DrdII EagI EciI EcoNI EcoRV FseI FspI HindIII HpaI KpnI MfeI MluI MscI NarI NcoI NdeI NgoAIV NheI NotI NruI NsiI NspV PacI Pfl1108I PinAI PmeI PmlI PshAI Psp1406I PstI PvuI RcaI RsrII SacI SacII SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XhoI XmnI