(Linear) MAP of: ./Fgr_contig0023.seq check: 9359 from: 1 to: 1214 Fgr_contig0023 Using Enzyme data from: /home/pmiguel/dat/enzyme.dat FileCheck: 3232 Restriction enzyme data file used by the programs MAP, MAPSORT and MAPPLOT. A complete format description of this file may be found in the Data Files manual. Only one enzyme per recognition specificity is used when the '*' is preSsed to select all default enzymes. In addition, enzymes that are commercially available but are not unique in . . . With 115 enzymes: * July 9, 2001 13:50 .. BssSI StuI PvuI | | | GCACGAGGCCATCAGGATCGGAGAGACAGCTATTCGCAACTGTCTCCGCGATCAACTCGCAACATTAAGACAGGAAGGCCTCGATCGCACCGGAAAGCAT 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 CGTGCTCCGGTAGTCCTAGCCTCTCTGTCGATAAGCGTTGACAGAGGCGCTAGTTGAGCGTTGTAATTCTGTCCTTCCGGAGCTAGCGTGGCCTTTCGTA a A R G H Q D R R D S Y S Q L S P R S T R N I K T G R P R S H R K A S - b H E A I R I G E T A I R N C L R D Q L A T L R Q E G L D R T G K H - c T R P S G S E R Q L F A T V S A I N S Q H * D R K A S I A P E S I - 1 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 100 d R P W * S R L S L * E C S D G R D V R L M L V P L G R D C R F A - e V L G D P D S L C S N A V T E A I L E C C * S L F A E I A G S L M - f C S A M L I P S V A I R L Q R R S * S A V N L C S P R S R V P F C - BsbI EcoRI BsmI Pfl1108I BsrDI | | | | | CCTTGTGTGTTGTCAGAATTCGGCATTCCCTACGATATGGACGACAAAAAGGCTTACAAGACTGGTGACTATTCAAGCCAGTCAGCGGCAATGGACGCCA 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 GGAACACACAACAGTCTTAAGCCGTAAGGGATGCTATACCTGCTGTTTTTCCGAATGTTCTGACCACTGATAAGTTCGGTCAGTCGCCGTTACCTGCGGT a L C V V R I R H S L R Y G R Q K G L Q D W * L F K P V S G N G R Q - b P C V L S E F G I P Y D M D D K K A Y K T G D Y S S Q S A A M D A N - c L V C C Q N S A F P T I W T T K R L T R L V T I Q A S Q R Q W T P - 101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 200 d D K H T T L I R C E R R Y P R C F P K C S Q H S N L G T L P L P R W - e R T H Q * F E A N G V I H V V F L S V L S T V I * A L * R C H V G - f G Q T N D S N P M G * S I S S L F A * L V P S * E L W D A A I S A - BseRI | ATTACTTTGCTGTCGAAGGATCGCAAATTGAAGGACACTGCCTTTGGACATATTGTGCGAGGAACGATCACGTCCGAGGAGACTTTTGGAACGGAGAGGA 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 TAATGAAACGACAGCTTCCTAGCGTTTAACTTCCTGTGACGGAAACCTGTATAACACGCTCCTTGCTAGTGCAGGCTCCTCTGAAAACCTTGCCTCTCCT a L L C C R R I A N * R T L P L D I L C E E R S R P R R L L E R R G - b Y F A V E G S Q I E G H C L W T Y C A R N D H V R G D F W N G E D - c I T L L S K D R K L K D T A F G H I V R G T I T S E E T F G T E R T - 201 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 300 d N S Q Q R L I A F Q L V S G K S M N H S S R D R G L L S K S R L P - e I V K S D F S R L N F S V A K P C I T R P V I V D S S V K P V S L - f L * K A T S P D C I S P C Q R Q V Y Q A L F S * T R P S K Q F P S S - BspEI BseRI| EarI BsbI || | | CTTGTCGATTCTCTCATTGGATGACACACCGCTTCCGGATTCTCCTCTTCCCGAATACTCGCAGTCAACACTGGATTTGGCGAGGACTGCGACCGCCACA 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 GAACAGCTAAGAGAGTAACCTACTGTGTGGCGAAGGCCTAAGAGGAGAAGGGCTTATGAGCGTCAGTTGTGACCTAAACCGCTCCTGACGCTGGCGGTGT a L V D S L I G * H T A S G F S S S R I L A V N T G F G E D C D R H K - b L S I L S L D D T P L P D S P L P E Y S Q S T L D L A R T A T A T - c C R F S H W M T H R F R I L L F P N T R S Q H W I W R G L R P P Q - 301 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 400 d S T S E R M P H C V A E P N E E E R I S A T L V P N P S S Q S R W - e V Q R N E * Q I V C R K R I R R K G F V R L * C Q I Q R P S R G G C - f K D I R E N S S V G S G S E G R G S Y E C D V S S K A L V A V A V - Psp1406I AceIII BamHI | | | AATGGAAAGAAGGATGTCGCCGATGATCGAAACGTTACACCCGATAATCTCAAACGAACGCTCACCAACCCATCCATCAGCTCTGCGCCCTCCACTAAGG 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 TTACCTTTCTTCCTACAGCGGCTACTAGCTTTGCAATGTGGGCTATTAGAGTTTGCTTGCGAGTGGTTGGGTAGGTAGTCGAGACGCGGGAGGTGATTCC a W K E G C R R * S K R Y T R * S Q T N A H Q P I H Q L C A L H * G - b N G K K D V A D D R N V T P D N L K R T L T N P S I S S A P S T K D - c M E R R M S P M I E T L H P I I S N E R S P T H P S A L R P P L R - 401 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 500 d L H F S P H R R H D F R * V R Y D * V F A * W G M W * S Q A R W * P - e I S L L I D G I I S V N C G I I E F S R E G V W G D A R R G G S L - f F P F F S T A S S R F T V G S L R L R V S V L G D M L E A G E V L - AhdI Bpu10I BsbI AatII| | | || ATCCTCAGCTAACCAACGCACCCGGCTACCGTGCTGCCGAAGCCTATGTGCGCCCAACACCCACCGCAGTGTACGGTGACGTCGTGTCTACCGGGTTCGA 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 TAGGAGTCGATTGGTTGCGTGGGCCGATGGCACGACGGCTTCGGATACACGCGGGTTGTGGGTGGCGTCACATGCCACTGCAGCACAGATGGCCCAAGCT a S S A N Q R T R L P C C R S L C A P N T H R S V R * R R V Y R V R - b P Q L T N A P G Y R A A E A Y V R P T P T A V Y G D V V S T G F D - c I L S * P T H P A T V L P K P M C A Q H P P Q C T V T S C L P G S I - 501 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 600 d D E A L W R V R S G H Q R L R H A G L V W R L T R H R R T * R T R - e I R L * G V C G A V T S G F G I H A W C G G C H V T V D H R G P E - f S G * S V L A G P * R A A S A * T R G V G V A T Y P S T T D V P N S - ApaLI Bce83I | NdeI NarI | | | | TCTGCGACAGTGCACATATGTCCTCAAGGTCAAGGCGCCAAAGGCAGCACCAGACGATGCTCCCACGATTGTGTTTTTGCCCGAATACCATTTCCCCAAG 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 AGACGCTGTCACGTGTATACAGGAGTTCCAGTTCCGCGGTTTCCGTCGTGGTCTGCTACGAGGGTGCTAACACAAAAACGGGCTTATGGTAAAGGGGTTC a S A T V H I C P Q G Q G A K G S T R R C S H D C V F A R I P F P Q G - b L R Q C T Y V L K V K A P K A A P D D A P T I V F L P E Y H F P K - c C D S A H M S S R S R R Q R Q H Q T M L P R L C F C P N T I S P R - 601 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 700 d D A V T C M H G * P * P A L P L V L R H E W S Q T K A R I G N G W - e I Q S L A C I D E L D L R W L C C W V I S G R N H K Q G F V M E G L - f R R C H V Y T R L T L A G F A A G S S A G V I T N K G S Y W K G L - EarI DrdI AceIII | Bpu1102I EarI Bpu10I | | | | | | GACCAGTGCGACGTAGCTGTCTCTTCCGGCAAGTGGGAGCTGAGCATAGATGACGAAGAGGGTACGTCACTTCAAATGCTCAGGTGGTGGCATGGTGAAG 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 CTGGTCACGCTGCATCGACAGAGAAGGCCGTTCACCCTCGACTCGTATCTACTGCTTCTCCCATGCAGTGAAGTTTACGAGTCCACCACCGTACCACTTC a P V R R S C L F R Q V G A E H R * R R G Y V T S N A Q V V A W * R - b D Q C D V A V S S G K W E L S I D D E E G T S L Q M L R W W H G E G - c T S A T * L S L P A S G S * A * M T K R V R H F K C S G G G M V K - 701 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 800 d P G T R R L Q R K R C T P A S C L H R L P Y T V E F A * T T A H H L - e V L A V Y S D R G A L P L Q A Y I V F L T R * K L H E P P P M T F - f S W H S T A T E E P L H S S L M S S S S P V D S * I S L H H C P S - Bce83I XcmI | BglI | | StuI Psp1406I EarI Eco57I BsrDI | | | | | | | | | | | GTGAACAGAGTCTCAAAATTTCAGGCCTTGTGCGTAAGCACAACGTTCCTGTAGGATCTGAAGAGGATGCCGGTTATCTTGAGCAATGCCAGCAGGGCTA 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 CACTTGTCTCAGAGTTTTAAAGTCCGGAACACGCATTCGTGTTGCAAGGACATCCTAGACTTCTCCTACGGCCAATAGAACTCGTTACGGTCGTCCCGAT a * T E S Q N F R P C A * A Q R S C R I * R G C R L S * A M P A G L - b E Q S L K I S G L V R K H N V P V G S E E D A G Y L E Q C Q Q G Y - c V N R V S K F Q A L C V S T T F L * D L K R M P V I L S N A S R A M - 801 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 900 d H V S D * F K L G Q A Y A C R E Q L I Q L P H R N D Q A I G A P S - e T F L T E F N * A K H T L V V N R Y S R F L I G T I K L L A L L A - f P S C L R L I E P R T R L C L T G T P D S S S A P * R S C H W C P * - PstI Bpu1102I | | TGGATTTAACTTTGGAAGCTGCAGTGTTATGTGAGCTAAGCCTTGTTTTGGATGAGGCGCATATAAGCGCCTGGTATTCCAGTTTGAGTAACCTTTCTGG 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 ACCTAAATTGAAACCTTCGACGTCACAATACACTCGATTCGGAACAAAACCTACTCCGCGTATATTCGCGGACCATAAGGTCAAACTCATTGGAAAGACC a W I * L W K L Q C Y V S * A L F W M R R I * A P G I P V * V T F L A - b G F N F G S C S V M * A K P C F G * G A Y K R L V F Q F E * P F W - c D L T L E A A V L C E L S L V L D E A H I S A W Y S S L S N L S G - 901 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1000 d H I * S Q F S C H * T L * A K N Q I L R M Y A G P I G T Q T V K R - e I S K V K S A A T N H S S L R T K S S A C I L A Q Y E L K L L R E P - f P N L K P L Q L T I H A L G Q K P H P A Y L R R T N W N S Y G K Q - BssSI BglII BsbI|Psp1406I | || | CAAACATTTTATTATGGGACATGGGCGTTGAGATCTATCCGAGAACTACACTTTTAATCGAATACGCTGGTAGGTAATTTGAAACTGTCAACACGAGGAA 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 GTTTGTAAAATAATACCCTGTACCCGCAACTCTAGATAGGCTCTTGATGTGAAAATTAGCTTATGCGACCATCCATTAAACTTTGACAGTTGTGCTCCTT a N I L L W D M G V E I Y P R T T L L I E Y A G R * F E T V N T R N - b Q T F Y Y G T W A L R S I R E L H F * S N T L V G N L K L S T R G T - c K H F I M G H G R * D L S E N Y T F N R I R W * V I * N C Q H E E - 1001 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1100 d A F M K N H S M P T S I * G L V V S K I S Y A P L Y N S V T L V L F - e L C K I I P C P R Q S R D S F * V K L R I R Q Y T I Q F Q * C S S - f C V N * * P V H A N L D I R S S C K * D F V S T P L K F S D V R P - CGTTATATAGTACATACACCGTGTCGTTCTTAGCACATGATAGATTGGCTACTTTACGATTGGGAATTTACATTTTATGAAGGTACACTATTGAACAAAA 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 GCAATATATCATGTATGTGGCACAGCAAGAATCGTGTACTATCTAACCGATGAAATGCTAACCCTTAAATGTAAAATACTTCCATGTGATAACTTGTTTT a V I * Y I H R V V L S T * * I G Y F T I G N L H F M K V H Y * T K - b L Y S T Y T V S F L A H D R L A T L R L G I Y I L * R Y T I E Q K - c R Y I V H T P C R S * H M I D W L L Y D W E F T F Y E G T L L N K K - 1101 ---------+---------+---------+---------+---------+---------+---------+---------+---------+---------+ 1200 d T I Y Y M C R T T R L V H Y I P * K V I P F K C K I F T C * Q V F - e R * I T C V G H R E * C M I S Q S S * S Q S N V N * S P V S N F L - f V N Y L V Y V T D N K A C S L N A V K R N P I * M K H L Y V I S C F - AACAAAAAAAAAAA 1201 ---------+---- 1214 TTGTTTTTTTTTTT a N K K K - b T K K K - c Q K K K - 1201 ---------+---- 1214 d F L F F F - e F C F F F - f V F F F - Enzymes that do cut: AatII AceIII AhdI ApaLI BamHI Bce83I BglI BglII Bpu10I Bpu1102I BsbI BseRI BsmI BspEI BsrDI BssSI DrdI EarI Eco57I EcoRI NarI NdeI Pfl1108I Psp1406I PstI PvuI StuI XcmI Enzymes that do not cut: AflII AlwNI ApaI ApaBI AscI AvrII BbsI BcgI BclI BfiI BplI BpmI BsaI BsaBI BsaXI BsgI BsiWI BsmBI BspGI BspLU11I BspMI BsrBI BsrGI BssHII Bst1107I BstEII BstXI Bsu36I ClaI DraI DraIII DrdII EagI EciI Eco47III EcoNI EcoRV FseI FspI HgiEII HindIII HpaI KpnI MfeI MluI MscI NcoI NgoAIV NheI NotI NruI NsiI NspV PacI PflMI PinAI PmeI PmlI PshAI PvuII RcaI RsrII SacI SacII SalI SanDI SapI ScaI SexAI SfiI SgfI SgrAI SmaI SnaBI SpeI SphI SrfI Sse8387I Sse8647I SspI SwaI Tth111I VspI XbaI XhoI XmnI